mRNA_H-paniculata_contig10294.192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10294.192.1
Unique NamemRNA_H-paniculata_contig10294.192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10294.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10294contigH-paniculata_contig10294:280..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog126957.SMAR015225-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs2D0ZU@1,2SG5X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.5412571-CDS-H-paniculata_contig10294:279..8851622928732.5412571-CDS-H-paniculata_contig10294:279..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 280..885 -
1691480598.7479215-CDS-H-paniculata_contig10294:279..8851691480598.7479215-CDS-H-paniculata_contig10294:279..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10294 280..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10294.192.1prot_H-paniculata_contig10294.192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10294 280..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10294.192.1

>prot_H-paniculata_contig10294.192.1 ID=prot_H-paniculata_contig10294.192.1|Name=mRNA_H-paniculata_contig10294.192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
AQKAWITLITTCKGMALKIVQSTESPSEAWRKLQKHYRASGLKEKSRLLR
EFNSLRMEPGEESTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNGLSPE
YDIERRMIESSDDTPNRARIETIIANQYNRLQQQKAETGAKALAVTMKGT
PEACQLCHKLGHTAPQCRGGRRASLNIKKRFDGNCRHCGKHGHRGEDCWG
AK
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mRNA from alignment at H-paniculata_contig10294:280..885-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10294.192.1 ID=mRNA_H-paniculata_contig10294.192.1|Name=mRNA_H-paniculata_contig10294.192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig10294:280..885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAAAAAGCGTGGATCACGCTAATCACGACCTGCAAAGGCATGGCGTT
GAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCC
AAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTGCTGCGC
GAATTTAACTCCCTCAGGATGGAGCCCGGGGAAGAATCCACAAAATTCCT
TTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCG
TCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTATCACCAGAG
TATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACGCCAAATAG
AGCGCGCATCGAAACGATCATCGCAAACCAGTATAACAGGCTTCAGCAGC
AGAAAGCCGAGACCGGAGCAAAGGCACTGGCGGTCACGATGAAAGGTACA
CCGGAAGCTTGCCAGTTGTGCCACAAGCTTGGGCACACAGCTCCTCAATG
CAGGGGGGGTCGAAGGGCATCCTTGAACATCAAGAAAAGGTTCGACGGCA
ATTGCCGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGGGC
GCCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10294:280..885-

>mRNA_H-paniculata_contig10294.192.1 ID=mRNA_H-paniculata_contig10294.192.1|Name=mRNA_H-paniculata_contig10294.192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig10294:280..885- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAAAAAGCGTGGATCACGCTAATCACGACCTGCAAAGGCATGGCGTT
GAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGAAGCTCC
AAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTGCTGCGC
GAATTTAACTCCCTCAGGATGGAGCCCGGGGAAGAATCCACAAAATTCCT
TTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCG
TCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTATCACCAGAG
TATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACGCCAAATAG
AGCGCGCATCGAAACGATCATCGCAAACCAGTATAACAGGCTTCAGCAGC
AGAAAGCCGAGACCGGAGCAAAGGCACTGGCGGTCACGATGAAAGGTACA
CCGGAAGCTTGCCAGTTGTGCCACAAGCTTGGGCACACAGCTCCTCAATG
CAGGGGGGGTCGAAGGGCATCCTTGAACATCAAGAAAAGGTTCGACGGCA
ATTGCCGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGGGC
GCCAAAGCGCAAAAAGCGTGGATCACGCTAATCACGACCTGCAAAGGCAT
GGCGTTGAAGATCGTCCAGAGCACCGAGTCGCCGAGTGAGGCGTGGAGGA
AGCTCCAAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTG
CTGCGCGAATTTAACTCCCTCAGGATGGAGCCCGGGGAAGAATCCACAAA
ATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGA
GGACCGTCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTATCA
CCAGAGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGATGACACGCC
AAATAGAGCGCGCATCGAAACGATCATCGCAAACCAGTATAACAGGCTTC
AGCAGCAGAAAGCCGAGACCGGAGCAAAGGCACTGGCGGTCACGATGAAA
GGTACACCGGAAGCTTGCCAGTTGTGCCACAAGCTTGGGCACACAGCTCC
TCAATGCAGGGGGGGTCGAAGGGCATCCTTGAACATCAAGAAAAGGTTCG
ACGGCAATTGCCGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGC
TGGGGCGCCAAA
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