mRNA_H-paniculata_contig10290.191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10290.191.1
Unique NamemRNA_H-paniculata_contig10290.191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.760e-14
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   52 EIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            E+ A++ S G+ + EE ++G   Y DPL WW   C DFP L  LARR+LAIPATQA+SER FS
Sbjct:  197 ELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFS 259          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.650e-9
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   16 VDMDPYRRRA----AREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
                P RR+     +RE++A++ + G+A+  E E G +    PL+WW     ++P L +LARR+L IPA QAQSER FS
Sbjct:  439 ASSSPLRRQMESIISREVDAFKITPGLAVSWE-EKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFS 516          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.340e-7
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   52 EIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSER 231
            E+ +++ + G+++     DG   Y DPL WW     +FP L ALARR+LAIP++QA SER
Sbjct:  489 EVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSER 548          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A6P8TX40_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8TX40_GYMAC)

HSP 1 Score: 55.8 bits (133), Expect = 3.190e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
Query:  127 DPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            DPL+WW  H G+FP ++ LAR+ L IPAT A SER FS
Sbjct:  440 DPLEWWQNHDGNFPRVSQLARKYLCIPATSAPSERVFS 477          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A3B3T1Z0_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3T1Z0_9TELE)

HSP 1 Score: 53.1 bits (126), Expect = 2.820e-6
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  127 DPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            D L WW EH    P L+ +ARR+LAIPAT A SER FS
Sbjct:  371 DLLSWWKEHASTLPRLSQIARRILAIPATSAPSERAFS 408          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: A0A6G0WVR8_APHCR (Zinc finger protein 618-like n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0WVR8_APHCR)

HSP 1 Score: 52.4 bits (124), Expect = 5.270e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1
Query:  115 DRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            D   D LQWW EH    P++  LA R+LAIPA+ A SER+FS
Sbjct:  344 DERQDILQWWKEHSDKLPLMAKLASRILAIPASSAASERSFS 385          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: UPI0011B831FF (zinc finger BED domain-containing protein 1-like isoform X1 n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B831FF)

HSP 1 Score: 52.0 bits (123), Expect = 7.120e-6
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 1
Query:   22 MDPYRRRAAREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            M   R RA  EI  YRE   +AL            D LQWW +   D P+L+ALA+  L IPAT   SER FS
Sbjct:  290 MKTTRERARAEILKYRERDSLALS----------GDVLQWWKKQV-DLPLLSALAKSYLCIPATSVPSERVFS 351          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: UPI0011B4CD2D (zinc finger BED domain-containing protein 1-like isoform X1 n=2 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4CD2D)

HSP 1 Score: 52.0 bits (123), Expect = 7.370e-6
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = 1
Query:   22 MDPYRRRAAREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            M   R RA  EI  YRE   +AL            D LQWW +   D P+L+ALA+  L IPAT   SER FS
Sbjct:  538 MKTTRERARAEILKYRERDSLALS----------GDVLQWWKKQV-DLPLLSALAKSYLCIPATSVPSERVFS 599          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: UPI001BF29065 (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF29065)

HSP 1 Score: 51.6 bits (122), Expect = 1.010e-5
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    7 APLVDMDPYRRRAAREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            +PLV    ++RRA+R I   R      L E++E  +D +   L WW  H   FP+L+ +AR LLAIP T   SE  FS
Sbjct:  607 SPLVQRY-HQRRASRNIMRCRSEVERYLMEDVEAPSDAF-QLLTWWKVHSTKFPILSRIARDLLAIPITTVASESVFS 682          
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Match: UPI001BF8472F (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF8472F)

HSP 1 Score: 51.6 bits (122), Expect = 1.020e-5
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    7 APLVDMDPYRRRAAREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPMLTALARRLLAIPATQAQSERTFS 240
            +PLV    ++RRA+R I   R      L E++E  +D +   L WW  H   FP+L+ +AR LLAIP T   SE  FS
Sbjct:  606 SPLVQRY-HQRRASRNIMQCRSEVERYLMEDVEAPSDAF-QLLTWWKVHSTKFPILSRIARDLLAIPITTVASESAFS 681          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10290.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE2.760e-1455.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE5.650e-941.77Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KUY5_9PHAE2.340e-745.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P8TX40_GYMAC3.190e-760.53zinc finger BED domain-containing protein 1-like n... [more]
A0A3B3T1Z0_9TELE2.820e-660.53Uncharacterized protein n=1 Tax=Paramormyrops king... [more]
A0A6G0WVR8_APHCR5.270e-654.76Zinc finger protein 618-like n=1 Tax=Aphis cracciv... [more]
UPI0011B831FF7.120e-643.84zinc finger BED domain-containing protein 1-like i... [more]
UPI0011B4CD2D7.370e-643.84zinc finger BED domain-containing protein 1-like i... [more]
UPI001BF290651.010e-541.03Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
UPI001BF8472F1.020e-541.03Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10290contigH-paniculata_contig10290:135..374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.2142503-CDS-H-paniculata_contig10290:134..3531622928732.2142503-CDS-H-paniculata_contig10290:134..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10290 135..353 -
1691480598.6002889-CDS-H-paniculata_contig10290:134..3531691480598.6002889-CDS-H-paniculata_contig10290:134..353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10290 135..353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.2263978-UTR-H-paniculata_contig10290:353..3741622928732.2263978-UTR-H-paniculata_contig10290:353..374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10290 354..374 -
1691480598.610352-UTR-H-paniculata_contig10290:353..3741691480598.610352-UTR-H-paniculata_contig10290:353..374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10290 354..374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10290.191.1prot_H-paniculata_contig10290.191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10290 135..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10290.191.1

>prot_H-paniculata_contig10290.191.1 ID=prot_H-paniculata_contig10290.191.1|Name=mRNA_H-paniculata_contig10290.191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MDPYRRRAAREIEAYRESAGVALEEELEDGTDRYPDPLQWWNEHCGDFPM
LTALARRLLAIPATQAQSERTFS
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mRNA from alignment at H-paniculata_contig10290:135..374-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10290.191.1 ID=mRNA_H-paniculata_contig10290.191.1|Name=mRNA_H-paniculata_contig10290.191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig10290:135..374- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGCGCGCCGTTGGTGGACATGGATCCCTATCGGCGCCGAGCTGCAAG AGAGATCGAGGCGTACCGGGAGTCCGCGGGCGTGGCTCTCGAAGAGGAGC TTGAGGACGGTACCGACCGCTACCCCGACCCCCTCCAGTGGTGGAATGAA CACTGTGGCGACTTTCCTATGCTCACGGCGCTTGCCCGGCGCTTGCTCGC CATCCCGGCAACACAGGCACAGTCAGAACGCACGTTCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig10290:135..374-

>mRNA_H-paniculata_contig10290.191.1 ID=mRNA_H-paniculata_contig10290.191.1|Name=mRNA_H-paniculata_contig10290.191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig10290:135..374- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCCTATCGGCGCCGAGCTGCAAGAGAGATCGAGGCGTACCGGGA
GTCCGCGGGCGTGGCTCTCGAAGAGGAGCTTGAGGACGGTACCGACCGCT
ACCCCGACCCCCTCCAGTGGTGGAATGAACACTGTGGCGACTTTCCTATG
CTCACGGCGCTTGCCCGGCGCTTGCTCGCCATCCCGGCAACACAGGCACA
GTCAGAACGCACGTTCTCGATGGATCCCTATCGGCGCCGAGCTGCAAGAG
AGATCGAGGCGTACCGGGAGTCCGCGGGCGTGGCTCTCGAAGAGGAGCTT
GAGGACGGTACCGACCGCTACCCCGACCCCCTCCAGTGGTGGAATGAACA
CTGTGGCGACTTTCCTATGCTCACGGCGCTTGCCCGGCGCTTGCTCGCCA
TCCCGGCAACACAGGCACAGTCAGAACGCACGTTCTCG
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