mRNA_H-paniculata_contig10289.190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10289.190.1
Unique NamemRNA_H-paniculata_contig10289.190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10289.190.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.210e-52
Identity = 123/216 (56.94%), Postives = 143/216 (66.20%), Query Frame = 1
Query:  667 AGKRKGGRDGVPPLKRRGSSVWSFKR-----RSGE----DEEPGAERRAFEEAVAAA-EGHAEVATAEFPVSVREFYERFFGDDAPYGLPDFHMTRGDWEVDAGEWQTRGDENEAQEGSRSXXXXXXXXXXXXXXXXXEAGPKVFGSRGESGSTGLTRAIRFKTPLHITFMSSPGQVRTLKRQRARFFGAEGCVVDTITTVEDRIPLSDNFHVEDR 1284
            AG RK G      L R+GS +W+  R     R+G       +P A+R+A EEA++A  + HAEVATAEF VSV+EFYERF  DDAPY LPDFHM+RGDWEVDAGEWQ    E E   G+       XXX           GP+        G  G+TRAIRFKTPLHITFMSSPG VRTLKRQR+R FG +GC+V+T TTVEDRIPL+DNFHVEDR
Sbjct:  542 AGGRKAG------LVRQGSKLWNMMRWDSGGRAGGAGDGGVDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDAGEWQHTTKEGEGGGGAAGSTKGDXXXLR---------GPRP------PGGGGVTRAIRFKTPLHITFMSSPGHVRTLKRQRSRVFGGQGCIVETQTTVEDRIPLNDNFHVEDR 736          
BLAST of mRNA_H-paniculata_contig10289.190.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.070e-51
Identity = 132/216 (61.11%), Postives = 150/216 (69.44%), Query Frame = 1
Query:  667 AGKRKGGRDGVPPLKRRGSSVWSFKR-----RSGEDEE----PGAERRAFEEAVAAA-EGHAEVATAEFPVSVREFYERFFGDDAPYGLPDFHMTRGDWEVDAGEWQTRGDENEAQEGSRSXXXXXXXXXXXXXXXXXEAGPKVFGSRGESGSTGLTRAIRFKTPLHITFMSSPGQVRTLKRQRARFFGAEGCVVDTITTVEDRIPLSDNFHVEDR 1284
            AG RK G      L R+GS +W+  R     R+G   E    P A+R+A EEA++A  + HAEVATAEF VSV+EFYERF  DDAPY LPDFHM+RGDWEVDA EWQ   +E E   G+     XXXXXXXXXXXXXX                 +TRAIRFKTPLHITFMSSPG VRTLKRQR+RFFG +GC+V+T TTVEDRIPLSDNFHVEDR
Sbjct:  536 AGGRKAG------LVRQGSKLWNMMRWDSGGRAGGAGEGGGDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWEVDASEWQQTTEEGEGGGGATGSTKXXXXXXXXXXXXXXXXX--------------VTRAIRFKTPLHITFMSSPGHVRTLKRQRSRFFGGQGCIVETQTTVEDRIPLSDNFHVEDR 731          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10289.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMW1_ECTSI1.210e-5256.94VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE3.070e-5161.11VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10289contigH-paniculata_contig10289:70..7740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue2.8e-49
Seed eggNOG ortholog2880.D8LMW1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1287
Cds size1287
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10289.190.1prot_H-paniculata_contig10289.190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10289 70..7740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928732.0835245-CDS-H-paniculata_contig10289:69..1431622928732.0835245-CDS-H-paniculata_contig10289:69..143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 70..143 +
1691480598.5356293-CDS-H-paniculata_contig10289:69..1431691480598.5356293-CDS-H-paniculata_contig10289:69..143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 70..143 +
1622928732.099312-CDS-H-paniculata_contig10289:1580..19781622928732.099312-CDS-H-paniculata_contig10289:1580..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 1581..1978 +
1691480598.546429-CDS-H-paniculata_contig10289:1580..19781691480598.546429-CDS-H-paniculata_contig10289:1580..1978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 1581..1978 +
1622928732.1147804-CDS-H-paniculata_contig10289:2113..24601622928732.1147804-CDS-H-paniculata_contig10289:2113..2460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 2114..2460 +
1691480598.5559168-CDS-H-paniculata_contig10289:2113..24601691480598.5559168-CDS-H-paniculata_contig10289:2113..2460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 2114..2460 +
1622928732.1311386-CDS-H-paniculata_contig10289:5529..56461622928732.1311386-CDS-H-paniculata_contig10289:5529..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 5530..5646 +
1691480598.5650518-CDS-H-paniculata_contig10289:5529..56461691480598.5650518-CDS-H-paniculata_contig10289:5529..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 5530..5646 +
1622928732.1473286-CDS-H-paniculata_contig10289:6525..67261622928732.1473286-CDS-H-paniculata_contig10289:6525..6726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 6526..6726 +
1691480598.5736551-CDS-H-paniculata_contig10289:6525..67261691480598.5736551-CDS-H-paniculata_contig10289:6525..6726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 6526..6726 +
1622928732.1613953-CDS-H-paniculata_contig10289:7590..77401622928732.1613953-CDS-H-paniculata_contig10289:7590..7740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 7591..7740 +
1691480598.5855942-CDS-H-paniculata_contig10289:7590..77401691480598.5855942-CDS-H-paniculata_contig10289:7590..7740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10289 7591..7740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10289.190.1

>prot_H-paniculata_contig10289.190.1 ID=prot_H-paniculata_contig10289.190.1|Name=mRNA_H-paniculata_contig10289.190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
GGGGGGGGGGRNRLGRAEKELETANLPPSSPTATKAGAAHGRTPRRAPSP
LCQGSGYSAAATAAAAAAVAAHGGDAGRMGLAILGGEHDIPSPYRGRYQH
LNTGGNNGRRSPRQAAVITGEGRGGWEPVDISSLPLPPPRAANASNSRTT
AAAVTAVATAAAATAAASGSGISERDRKSSSRGGDVLVNGAKSDVRAGSG
KAAVVGAKDEGEKKRGEEEEGGAGKRKGGRDGVPPLKRRGSSVWSFKRRS
GEDEEPGAERRAFEEAVAAAEGHAEVATAEFPVSVREFYERFFGDDAPYG
LPDFHMTRGDWEVDAGEWQTRGDENEAQEGSRSNSSSSSSSSSSTGSRAS
EAGPKVFGSRGESGSTGLTRAIRFKTPLHITFMSSPGQVRTLKRQRARFF
GAEGCVVDTITTVEDRIPLSDNFHVEDR*
back to top

mRNA from alignment at H-paniculata_contig10289:70..7740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10289.190.1 ID=mRNA_H-paniculata_contig10289.190.1|Name=mRNA_H-paniculata_contig10289.190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7671bp|location=Sequence derived from alignment at H-paniculata_contig10289:70..7740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGGAATAGACTGGGAAGAGC CGAGAAGGAATTAGAGACAGCGAAGTAGGCACAGAGACGGCGAAACCCGA ACAAAACCAAAGTAAATGAAAATTCCAAAACTTTCGGAACTACATTTGCA CTACAAAATCAAAAAATCAAAAGCTTGTTCTCCTTTTACATGTCTTCGCT TGCGTTTTCATTGTTTTCCCTGCCCTCTTACTGCTTTTGGTACATCTTGC GGTGGTCCCTGTAAATCGAAATAGTGTGACTTCAAACTTGGAATCACTGT AACCTCCAACAGCGGAGCTCACAATCACCATGATCAGTTATCGCGTCCGC CTACTACCATTGCCACTGTCTGCCGTCGGCGGAAAATAATCTCCGCCCAC CCACCCGCCCACGCGTTTGTTAATTGCATTTGATATTTTCTTGGGGATGA AGGATTACGTGTTCCGAAGCTTTTGGGACAGAGATGAATGCCACAGCCTC TTGGAAAGGCTCAGGACGGATGCCGAAAAGGAAAGGACGGCGTTGTACCG GAAAGTGGAGGCAGTCACGGCGCTTTACGCAGATGAGGATGCACAGCTCC CCAACAACGTGAGCTTCAAACTTGCTTCTGCAAGAAAAGGCGTTTGTAAT GTCGAGATAAGTGATGGAATATTCTGGTGGTAACGGCGGCGATGGGGCGG AAAACAAGACCAGAGTAAGAGTCTGGGAGGGGCGCGGGGAGGGGAGGGAT GCGAGTGGCCTAGACCATGTATTCGCGGATAAATTTGTCACGGGAGGTTT GAAAGATGAGGACTCGCGGCGTTAGAGTTTTTATGCTAGAGTGGAGTATA CAATCAATCTTTCGCAAGTACAGCAGCAATGGCATACCTGGGGGGGAAGA CACAGAGGTTTGGACACAAAAAATACCCGACTACATCTCTTTTCCATCAT TGTTTCTGTTGTCTATTGTCTTCTTGATACTGCCGCGATGCCCCGTCTCG GTATCACCCGCCGCAGTCGCCGCCGCCGTCGCAATCCACCAATCCATTCA TTCTAGTATGCATCATCCAAATGTATTCGGATCCTATTTTTTTGTTCCCG TACATAACTCGGCGCGTCTCGTCGTTTGCGCCAGAATGCGAGCGGGGACC AGCAGCAGCAGCAACAAGAACAAGAGCAGGACCTTCGCTACTCTTCCCCG GATCGCAGCACAAGCAGACAAGGCATCGACCAAAGCGAGGTCGTCGGCGG CGATGTGGTGAAAGATGGCAGATTTCTTCGCTCGGAATCACAACAACAGC AGAAACAACGAGCAGGAGGACGGTCGCAAGGCGAGGTAGCCGATCTCGCT GCCAACGACACTCTTGATCGCAGTAGGCACAAGGGTGACAGGTCTCGTTC AAACTCGACGATGGTAACGATCGTGAGTGGCCGAACAGCAGCTGACTCGA CCGTACCCCAGCTTCTCGATCAACAGCAGCAGGAGCAACCGCAACGTGTG CGGGCCAGCAGCCTGCCTCCCTCCTCCCCGACAGCGACGAAAGCAGGGGC AGCCCATGGTAGGACGCCTCGCCGAGCGCCGTCGCCCCTCTGCCAGGGTT CAGGTTACTCAGCCGCCGCAACGGCGGCCGCCGCCGCCGCCGTCGCGGCC CACGGCGGTGACGCTGGTCGCATGGGGTTGGCTATCCTGGGCGGGGAGCA CGATATCCCTTCCCCTTATCGAGGACGGTACCAGCACCTGAACACCGGGG GCAACAATGGTCGACGCTCGCCGAGACAAGCTGCGGTGATCACCGGGGAG GGTCGCGGTGGATGGGAACCGGTCGATATATCCTCGCTGCCGCTGCCGCC GCCGCGCGCTGCTAACGCTAGCAATAGTAGGACAACTGCAGCAGCAGTAA CAGCAGTAGGTGTAGTACCGAGGACGGATGCCGGCGGTGGAAAAGAAGGA AAAGGAGGGGGCGAGGTCGCCCTCGCTTCTCCTTCGACTAGACTGATAGA TTCATCGAAACTACCGACTGAAAATTCTGATGCATCGGTATCAGCGACAG CGGCAGCGGCGACAGCAGCTGCAAGTGGTAGCGGTATTAGTGAACGAGAT CGCAAAAGTAGTAGCAGGGGTGGTGATGTTTTAGTTAATGGTGCCAAGAG TGATGTGAGAGCAGGGTCAGGCAAGGCTGCGGTCGTTGGGGCGAAGGACG AGGGGGAGAAGAAGCGGGGGGAGGAGGAAGAGGGCGGCGCCGGGAAAAGA AAAGGTGGGCGGGATGGCGTGCCGCCGCTCAAGCGCAGAGGGTCTAGCGT GTGGAGTTTCAAGCGCAGGAGTGGGGAGGATGAGGAACCAGGAGCGGAGC GGAGAGCGTTTGAGGAAGCGGTCGCTGCAGCGGAGGGTCACGTGAGCACG TTAGGGGGTAGGTGGGCAGGCGGGCGGGGACACCAACTGAAATTCTCATT TGTAAATTAACCTGCCACAGCCAGTTGAACTAAAACTCTGAACCTCATAT AAAGAATTTATTGTACCCATGTTGATGTTGTGCATCTTGCTTTATCTCTA CTTATATACACTTGTCAGCAAAGTGAAATCAATAGAGGGGGGGGGAGGGG CGGGGGGCGGGGGGCGGGACTGGAAAATAATCGCACGTCAAGACTTGCAC TGTACGGTAGTCATGAGTTACGTGTATATATACTGTGAAATCGTGAATAG TTTAATACTGCTGGGGTCTTGCCAATCCTGATTTTTTTTTTTATCTAAGG TCTTAAAACACCTGGCGAACTTGCCCCTGTCAGTGATGTGCATCAGGCCC GGGGTCACGAGGAGGTAGTACTGCCGCTGTCAAGCTTTGCGCCTCCGGCC CGGGGGAGGTCTCTGCCTCTTGCCGGTTGTATCGCTGAGTATTCCTGCGT GCCGATTTCTCGAGGCGTGATCGATCTCGCCTCCACCAACCACCCCGTCC GACCTGCACGGCCTACGTGCTAGTTGGTGCCATCTGTGTCACTTGGTGTC TCTTATCTATGTGGTAAATAGGTGTATGCGCGGTTCGAACTCTTTTCCGA TATTTGTTTGTGTCTTGAACAACGTTGTTATCATTATGATCATTGCCATT ATGGCCATGCTATGTTTAAGCGCTTTATACTCGTGTTTGTGGTTATTTTA TAATATTGTATAGCAGTAGCTCGTGCTACTGTGGCAAGTTTACGCCGCGA AAGCACTTGGATATTGTAGCACACAAAAATATTCTGAGGGGCGATTGTTA TCATGTTTCACCGAATTAGAAAATAACTAGTATATGCATGTGTGTACAGT AAGGCTCCAAACTTCCCACCAACGAGGTGCAAAACGACGAGTAAGTGCAA GCGTTTTGAATGTGGAAGATATAAGATTTGAATTTGGACGGTCTTGACCC ATCTCGGCATCCGTCGGAGGATAAAGCGGCAGGCGAAGGAGAAGGCTGTT TCGGAACAGTAAAAAAACCTGAGGACTAAGGTCGAGTGATTGACAAAATC TGTACTGTCTGTAGCATTGGACTGACTGTCTTGATCAACGATGATTCCAC CATCCCCGCAATTTTTTCATACGCGAGGTGTGGAGGCTGGGTGGGAGACC CGGTGCCGAAAGCGGTGTACTGTTCGAAACATCGTTCGATATTGTAAGAT TTCGCCCCCCGGACAAACACGAAAACTTGGTGTATTCGCTACGAAAATGA AGAGATATTCGCCTGAGTTTCAGAATAAGTGGATACGTAGGGGTAAAAAT ACCCACCCCTGTCCATTCGATTTTTGAGTTTTATTTGCAGTCGTGGATGG TCCGGGGTATACGAAATACATGAATTCATTCTGAAACTCAGGCGAATACT TTGAAGAATTTGTGGCGAATATGCCAAGTATTCGTACTTGTCCCGGAAGT GTAACATTTTCAAGTATACCCTTCGAGCGTGGGCCGATGGCCAAGAATTA CGATGAGGGTGACCCAAGAGGGTGAACAATGCAGCGTTACAATACAGGAT CCTGCATGCATGGAGTGTTTGTCTCTTGAGCCTCGCGAACCGGTGCAGTG GTGCTGTGACGTACGCTATGTACTGTTGTGTAGCTGGGCCCGGTTCTCTG GGGAAAAGGCGCACGCACACGCGTAGAGCGGGACACGTGCGAAATATCGT ACGTAGTTACACACATGAGCTCGTTCGTCATGTGCTGTCTGTCTGTGCCA GGCTCTACCGTGTTTGTTACAGCTTTACGTGCTGTACGGTACTGTAGTGT GTCTATGCCCTGAGCTTCCGTGCCTAGTAAGTACTGTTCGTTACACCTTG GTTATACCTGGCCTTCTGGGAGCCTGTGGATCGGTGCAGTGGGGCTGCGG CAGGGTGACAGATGGCACGCTTATGCAGGGGTGCTTACTGTGTGTCGCAG CTTCATATGCTCTTCCTTGTTGTCACTGAAGAAAGAAGTTGGGCACACAC AGCTCATACCTCACAGCAGAAAATAGACCAGTCTCGACGCAGGAACCTCG CGTGCTTATTGACACCTACGGCCTCACACAGCAGGAACACTTCTCAATTT TTCATGAAGGAACAATTTGACACGCAGGCACCCTTCGCCCAGGTGAGCGC GGAAGTTTGCGTAAGGTTTTGTGCATTTTGATCAAATAGGAGGGAAAAGT TAGCGAACACAGGAGCGAGTACCACGGATCTACTACACTCCCGAACGGGT AGGGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGTGTTTT AGTGGATACAACCCTCACACAGCCTACCCGGTTCGGCCGAACCGGGGCGG GTGGCGCCTACCTCGCAGAGGAATGGATAACTCTGTTCTGTTAAAGGAAA TGTATAAATACTTGGGTAGAAATACTTGAGTATGGAAGCATCGGATAAAG GTTTTTACCTTAGCCTTCCGGGGGTTAAAGAAACAAACAAAAAAACACCG GAGCGAGCGGTTGCAATAATCGATATGTCTGCCACACTCTTGATATTAAC CTGGAAGAGCGTTAGGAAAGGATATCCGGATCTGAGATTAAGGGCAAAAA GAGAAAGCCAGGACCAAGAGCGCCGATCTTGGGAGTTTGTAATGCCTCTT ACACCTAATTCGTGTTGAAAACTACCCATATTTTGGAGTGTTTCAAAGGA GTGACAAAAAGCAGATTCTGGGTGCCCAAAAGCAGATATGCAATGGATTT GCGATTGCCCCGAGGTCAGATATATATATGAACACAATAGAGGCCCAAAA ACAGATGTGTCAGAGAGCACATCTCAGAGGGCTGCGTTCCGAAAGAGCCT AGCCCCTCCCTCACAAAACAACAATTATGAATTGTTAACTTGTGATGAAC GCTGGATCAAAGAGTCAGATGTAATGACATTGTTGAATTTTTCTTATTAT AGAAGGTATAAAAATACATGTATATATATATATATTCGATGTATGCTCTT GTCTTTGCAGGCGGAGGTGGCGACAGCAGAGTTTCCTGTATCCGTCCGGG AGTTCTACGAGAGATTTTTTGGCGATGACGCTCCGTATGGCCTACCCGAT TTCCACATGACCCGCGGTGACTGGGAGGTTGGTATTGATTGGCTTTGAAT TATTTCACCCCCCAGACAAATACGGATACTCGGGTAATCGCGACGAAAAT TAAAAACGTATTCGCCTAAGTTTTAGAATGAGCTCGTGTATTCTATGTGC CCCCAGACCATCCACGACAGGTAATAATACTTGTAAATGGGATGGACAGG GATGGGTACTTTGTTCTGTGTGTCTGCTCATTCTGAAACTCAGGCGAATA CTTTTTAATTTTCGTGGCGAGTACGCCAATTGTTCGTATTGGGGGTGAAC TTGTTTACGTACGAGGTATTGATGTATTAATACTAGGAAAATGACTTATA TTCATCTCCTTGGTATATTTTTTTGTAGTGGTACGGGTACTCGAGGAGTA TATAGCCGCGGTGACTGAGAGGTAGTACTGTATTTGCGAAGTAACCTATT TACTACTGTAGATGGGTTTTGAAATATTACACAGAAGGTATTGATTTATC ATCACCAAGAAAATAATACATTTTCACTCACTTGTCTATTTCTCAAGTGA TCCCGGTACTGGGAGAGTATGACTTTGCCTAACTCCCTGCACTCCGTACT CTGGTCCTCGACCCACACCCACAGCTGTTCGCTGCGCTGTGCTCGCACTA AGATTCCTTACAAATAAATGACTCTAGTACAGTATTGAAAATATGTTCCG AAATGACCATATTCAACAAAAATGATGTACTCATCTATGTGACTCGTTGG GTTCTTTCTGCTCTGGTCAGGAGATGTGTTGTATAAAACGCGTTGGTCCG GAACGCTTTGGCACCTCTCTTGTATAGGTTTCATCTCCCCAATGTACCCT CGGAGTATTTGTTTTGTTCATTTTTATTTTTTTTGGCAACCCTGACTGAC CAAAAGGTGGATGCTGGAGAATGGCAAACGAGGGGAGACGAGAATGAGGC GCAGGAAGGGAGTAGAAGCAACAGCAGCAGTAGCAGCAGCAGCAGCAGTA GTACTGGGAGTAGAGCTAGTGAAGCGGGTCCGAAGGTTTTTGGTTCGAGA GGTGAATCGGGTTCTACAGGGCTCACTCGAGCAATCCGCTTCAAGACCCC CTTGCATGTACGTGAGAGCGGCGATGCCGAAGCGAAAAGCGAGATGCAGG AAGAGAGCACCGTGGTTTATTTTGTTGTGTGGTTAGTCAGCAGTCAGGAG TCTCTAGCGTATCAACAAATACCCTGGGTGAAATCAAGTGACTAATGGCG AACTCGATATCGTGTTGTTCTCCAAGGCTACGGTATGGATGCACATATGT AGTAGAATCCCTGCAGGGATGAGTGGATCACTCGTAGATATGAGGTTGTT GTCTAGGACAAATATATCTCTGGTCGATTTTAATCGATCAATCTGTGATA ATGGTTGGGAAATTCAGGTGACGTGAACTTTATTGGGGTATGAAAAAAAG AAAAAATCCATTACTCGTTCAAGCTGCGTTTAAATGGAAGCGATTACGAT GTTTGTTGTCTATTTGTTGTCTTTCATGACCTAACGTCGAAAGGATTCAC GACTTATAAACACACACAAACATACACGACGTCCATTACAGGCAGTTGTA TCTCCCGATGGCGTGCATGGGGTTGTTGTATGAGTTGGAAAGTTTCGCCG ACTTGTTGCCGTCACAGGTTCGTCGTTTATTTCAAATTCATTATTGACAT GTATACCTGGTATGCACTGGTCGATGAAATTGTTCAAATCCAGATATATT GCGCACACGCGCGCGGTGTCTCTCTCTGCCTCTGTCTCTATGTCTGTCTC TAAAGCAGTCGATTGATTCACGTATTCTTTCGCGATTGAATGGACATTCG TTTACTAGAGTGTTGGCATGCGAGGCAGCACTCCACACACGAACACGCCT CCTCTCCCTTGCTCTTGCACTCGCTCTCTTTTCCTGTTCCTCTTTCTGTT TCTGTCTCTTTCTCTTTTCAGATTACGTTCATGAGCAGCCCGGGTCAGGT GCGCACGCTTAAGCGGCAGCGGGCTCGGTTCTTCGGCGCTGAGGGGTGCG TCGTAGACACCATCACCACGGTAGAAGATCGCATTCCTCTCAGTGATAAC TTCCATGTCGAAGACCGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10289:70..7740+

>mRNA_H-paniculata_contig10289.190.1 ID=mRNA_H-paniculata_contig10289.190.1|Name=mRNA_H-paniculata_contig10289.190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig10289:70..7740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGGAATAGACTGGGAAGAGC
CGAGAAGGAATTAGAGACAGCGAAGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGAAGGAATAGACTGGGAAGAGCCGAGAAGGAATTAGAGACAGCGAACC
TGCCTCCCTCCTCCCCGACAGCGACGAAAGCAGGGGCAGCCCATGGTAGG
ACGCCTCGCCGAGCGCCGTCGCCCCTCTGCCAGGGTTCAGGTTACTCAGC
CGCCGCAACGGCGGCCGCCGCCGCCGCCGTCGCGGCCCACGGCGGTGACG
CTGGTCGCATGGGGTTGGCTATCCTGGGCGGGGAGCACGATATCCCTTCC
CCTTATCGAGGACGGTACCAGCACCTGAACACCGGGGGCAACAATGGTCG
ACGCTCGCCGAGACAAGCTGCGGTGATCACCGGGGAGGGTCGCGGTGGAT
GGGAACCGGTCGATATATCCTCGCTGCCGCTGCCGCCGCCGCGCGCTGCT
AACGCTAGCAATAGTAGGACAACTGCAGCAGCAGTAACAGCAGTAGCCTG
CCTCCCTCCTCCCCGACAGCGACGAAAGCAGGGGCAGCCCATGGTAGGAC
GCCTCGCCGAGCGCCGTCGCCCCTCTGCCAGGGTTCAGGTTACTCAGCCG
CCGCAACGGCGGCCGCCGCCGCCGCCGTCGCGGCCCACGGCGGTGACGCT
GGTCGCATGGGGTTGGCTATCCTGGGCGGGGAGCACGATATCCCTTCCCC
TTATCGAGGACGGTACCAGCACCTGAACACCGGGGGCAACAATGGTCGAC
GCTCGCCGAGACAAGCTGCGGTGATCACCGGGGAGGGTCGCGGTGGATGG
GAACCGGTCGATATATCCTCGCTGCCGCTGCCGCCGCCGCGCGCTGCTAA
CGCTAGCAATAGTAGGACAACTGCAGCAGCAGTAACAGCAGTAGCGACAG
CGGCAGCGGCGACAGCAGCTGCAAGTGGTAGCGGTATTAGTGAACGAGAT
CGCAAAAGTAGTAGCAGGGGTGGTGATGTTTTAGTTAATGGTGCCAAGAG
TGATGTGAGAGCAGGGTCAGGCAAGGCTGCGGTCGTTGGGGCGAAGGACG
AGGGGGAGAAGAAGCGGGGGGAGGAGGAAGAGGGCGGCGCCGGGAAAAGA
AAAGGTGGGCGGGATGGCGTGCCGCCGCTCAAGCGCAGAGGGTCTAGCGT
GTGGAGTTTCAAGCGCAGGAGTGGGGAGGATGAGGAACCAGGAGCGGAGC
GGAGAGCGTTTGAGGAAGCGGTCGCTGCAGCGGAGGGTCACCGACAGCGG
CAGCGGCGACAGCAGCTGCAAGTGGTAGCGGTATTAGTGAACGAGATCGC
AAAAGTAGTAGCAGGGGTGGTGATGTTTTAGTTAATGGTGCCAAGAGTGA
TGTGAGAGCAGGGTCAGGCAAGGCTGCGGTCGTTGGGGCGAAGGACGAGG
GGGAGAAGAAGCGGGGGGAGGAGGAAGAGGGCGGCGCCGGGAAAAGAAAA
GGTGGGCGGGATGGCGTGCCGCCGCTCAAGCGCAGAGGGTCTAGCGTGTG
GAGTTTCAAGCGCAGGAGTGGGGAGGATGAGGAACCAGGAGCGGAGCGGA
GAGCGTTTGAGGAAGCGGTCGCTGCAGCGGAGGGTCACGCGGAGGTGGCG
ACAGCAGAGTTTCCTGTATCCGTCCGGGAGTTCTACGAGAGATTTTTTGG
CGATGACGCTCCGTATGGCCTACCCGATTTCCACATGACCCGCGGTGACT
GGGAGGCGGAGGTGGCGACAGCAGAGTTTCCTGTATCCGTCCGGGAGTTC
TACGAGAGATTTTTTGGCGATGACGCTCCGTATGGCCTACCCGATTTCCA
CATGACCCGCGGTGACTGGGAGGTGGATGCTGGAGAATGGCAAACGAGGG
GAGACGAGAATGAGGCGCAGGAAGGGAGTAGAAGCAACAGCAGCAGTAGC
AGCAGCAGCAGCAGTAGTACTGGGAGTAGAGCTAGTGAAGCGGGTCCGAA
GGTTTTTGGTTCGAGAGGTGAATCGGGTTCTACAGGGCTCACTCGAGCAA
TCCGCTTCAAGACCCCCTTGCATGTGGATGCTGGAGAATGGCAAACGAGG
GGAGACGAGAATGAGGCGCAGGAAGGGAGTAGAAGCAACAGCAGCAGTAG
CAGCAGCAGCAGCAGTAGTACTGGGAGTAGAGCTAGTGAAGCGGGTCCGA
AGGTTTTTGGTTCGAGAGGTGAATCGGGTTCTACAGGGCTCACTCGAGCA
ATCCGCTTCAAGACCCCCTTGCATATTACGTTCATGAGCAGCCCGGGTCA
GGTGCGCACGCTTAAGCGGCAGCGGGCTCGGTTCTTCGGCGCTGAGGGGT
GCGTCGTAGACACCATCACCACGGTAGAAGATCGCATTCCTCTCAGTGAT
AACTTCCATGTCGAAGACCGGTAAATTACGTTCATGAGCAGCCCGGGTCA
GGTGCGCACGCTTAAGCGGCAGCGGGCTCGGTTCTTCGGCGCTGAGGGGT
GCGTCGTAGACACCATCACCACGGTAGAAGATCGCATTCCTCTCAGTGAT
AACTTCCATGTCGAAGACCGGTAA
back to top