mRNA_H-paniculata_contig1028.188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1028.188.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE) HSP 1 Score: 325 bits (833), Expect = 6.680e-94 Identity = 246/649 (37.90%), Postives = 339/649 (52.23%), Query Frame = 2
Query: 416 ANDDGDFVMSMAESECDVKYRRVE-------VAPHISQGLHAGAMAHSMGDVMVIPSGYPHLNYESSGEAVPAFKGAINARPQKQHQYQVGHSGAIGDTHTHTHPGGNEKIFITPHFRRSGSAERALFRRRSESSTGGPSSSEGMERGSPLSDDNPYNDIQYEHQ--PLTPPESEAYWQPFGCAAAT------------EDSDAPEGSPLVSPLPFAFRLERTNFMAKGDSNNRP-SVDAMLGSLRTALADAGIDELDLRNGECVLECSFQRGNRFVSMWLRVYLPPDEACGQLHGKQST----QDEEMSGCSYLVEAQLREGDRLHFSALFRDLMKAFKSQNNGMSIAGTYRYKSRAEVGTGEGLVLEEASFSPSRQSLRLLVEQRDEIMSASSQPVTMRRALAEGFAGGVDAMPRDISRPPFVGSAPLMPAGMEDNKAEVFDKDTADDVILLAGMLAGKYLDVQTDASTAVAGLTADAKFVQSLSQAQAAGAASALCSASSRLLIETRHRPARRQAAVIVANLSTDPVCSATLMAADQSSGTTASGGGYQ-----------LVQMLVGMAMGVRGVNDADHVKKVEEEIGTRRECMRALVGLMECGALQPHEHSAVKALIECDPTGKGVNDLCLMARLRKCRELLQA 2251
A+ D D A S + YRR E VA ++ H A S G + IP+ P + E+SGE+V + GA ++ ++ + H A D TH G + +++ P S ++G +P + +P+ QY Q TP ++ PFG A EDSD +P V+ LP FRLERTN + + SVD++L +LR AL DAG+D LD + CVLECS+ GNRF+S+++RV+ PD A GQL S D+ YLVEAQLREGDRLHFSALFR++++AF +Q G+++ GT+RYK R TGEGL LE+ + +PSR S+RLL E+ + + S PV P ++RP S+P + D D DDV+LLA ML+G YLDVQ DA+ AVAGLT D K ++ LS+ AA AA+A+ A++RLL+ETRHRPARRQAAV VANL+ P A L+A+D LV+ LV ++MG D +K EEEIG RRECMRALVGL E ++ + A++ L+ DP+G+G D L RL +CRE+L++
Sbjct: 12 AHSDRDDEEVNAASGSGLMYRRSEPPSGGGLVAANLPMQAHYAARP-SAG-LGAIPADAPGFDSETSGESVGLWAGAYSSDVRRLAP-SIKHPSAYDDVQTHR--GDAQHMYVHP----------------------SKSGNDGGSGVAPPGNFDPFASDQYIFQGGETTP----RFFAPFGIAGNAHSSGLSSYDGELEDSD----TPCVATLPSTFRLERTNLVVTSPLMEQLLSVDSLLDALRAALTDAGVDVLDFKPAHCVLECSYHVGNRFLSLFIRVFKAPDRASGQLFDNSSVGNNNNDDGAEQTPYLVEAQLREGDRLHFSALFREILRAFMNQE-GVNLVGTFRYKPRTYPATGEGLALEQVNMAPSRNSIRLLAERGEATKTGGSLPV-----------------PASMARPQVSSSSPEL------------DSDMMDDVVLLADMLSGSYLDVQADAAAAVAGLTTDVKLLEQLSRGAAANAANAIAHAAARLLVETRHRPARRQAAVAVANLTKTPQLRAALLASDXXXXXXXXXXXXXXXXXXXXXXXXLVESLVVLSMGRV---DGSAARKSEEEIGMRRECMRALVGLAESRVVR--DMPAMRLLLSTDPSGRGAKDATLTKRLEECREILRS 590 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1028.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1028.188.1 >prot_H-paniculata_contig1028.188.1 ID=prot_H-paniculata_contig1028.188.1|Name=mRNA_H-paniculata_contig1028.188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=647bp MSRSSSNSGLGSSPPGSAHPARSTPSADLANDDGDFVMSMAESECDVKYRback to top mRNA from alignment at H-paniculata_contig1028:14847..23442+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1028.188.1 ID=mRNA_H-paniculata_contig1028.188.1|Name=mRNA_H-paniculata_contig1028.188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8596bp|location=Sequence derived from alignment at H-paniculata_contig1028:14847..23442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1028:14847..23442+ >mRNA_H-paniculata_contig1028.188.1 ID=mRNA_H-paniculata_contig1028.188.1|Name=mRNA_H-paniculata_contig1028.188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3882bp|location=Sequence derived from alignment at H-paniculata_contig1028:14847..23442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |