mRNA_H-paniculata_contig10279.187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10279.187.1
Unique NamemRNA_H-paniculata_contig10279.187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10279.187.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.830e-42
Identity = 114/224 (50.89%), Postives = 147/224 (65.62%), Query Frame = 3
Query:  171 FGLELQALRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVGGADVDEDDDGXXXXXXXXXXXXXDAGYASDGERQGFEQLLVQVLELLRATAACEEDSQVSGLIGGEGADLGPLMAVNVRCLQLSASSTRAMRNDPSEF---DFEDEDDE----------------GCQPPYTARAAAVALIRDLCQAFPDK-VPNVLSD-RSMRVDT 779
            FG+EL+ LRT +VLL H+PS +GDGHLGQLLPPLW++LT G   HE  +L   G+  G D DE        XXXXXXXXX   YASDGERQG ++L+VQ LELL A+AAC  D QVSGL+GGEGA +G L+AV +R LQL + S    R+ P+EF   + E+ + +                G  P  TAR+A +ALIRDLC+AFPDK VP ++++ +S  VD+
Sbjct:  322 FGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLWQLLTDGRERHEQSMLSSDGN--GEDGDE--------XXXXXXXXXXXXYASDGERQGLDELIVQSLELLAASAACP-DPQVSGLLGGEGAGVGSLLAVVIRYLQLPSESCALWRDSPNEFVVAELEEGEGDXXXXXXXXXXXXXXGAGRHPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDS 534          
BLAST of mRNA_H-paniculata_contig10279.187.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.750e-38
Identity = 109/209 (52.15%), Postives = 136/209 (65.07%), Query Frame = 3
Query:  171 FGLELQALRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVGGADVDEDDDGXXXXXXXXXXXXXDAGYASDGERQGFEQLLVQVLELLRATAACEEDSQVSGLIGGEGADLGPLMAVNVR----CLQLSASSTRAMRNDPSEFDFEDEDDEGCQPPYTARAAAVALIRDLCQAFPDKV-PNVLSD-RSMRVDT 779
            FG+EL+ LRT +VLL H+PS +GDGHLGQLLPPLW++LT G   HE  +L   GD  G D         XXXXXXXXXXX   YASDGERQG ++L+VQ LELL ATAAC  D QVSGL+GGEGA +G L+AV +R    C+   A+  R                 G  P  TAR+A +ALIR+LC+AFPDKV P ++++ +S  VD+
Sbjct:  209 FGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLWQLLTDGRERHERSMLAGGGD--GEDX--------XXXXXXXXXXXXXXYASDGERQGLDELIVQSLELLAATAACP-DPQVSGLLGGEGAGVGSLLAVVIRWRITCIYQCANHRRGGGGGA-----------GRHPVSTARSAGLALIRELCEAFPDKVVPALIAEAKSALVDS 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10279.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B3_ECTSI2.830e-4250.89Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5L6E1_9PHAE8.750e-3852.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10279contigH-paniculata_contig10279:7..5794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog2880.D7G8B3
Preferred nameIPO9
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG2274@2759
EC2.7.1.48
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons5
Model size1081
Cds size759
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928731.6062462-UTR-H-paniculata_contig10279:6..2871622928731.6062462-UTR-H-paniculata_contig10279:6..287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10279 7..287 -
1691480598.2921512-UTR-H-paniculata_contig10279:6..2871691480598.2921512-UTR-H-paniculata_contig10279:6..287Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10279 7..287 -
1622928731.70179-UTR-H-paniculata_contig10279:5753..57941622928731.70179-UTR-H-paniculata_contig10279:5753..5794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10279 5754..5794 -
1691480598.362772-UTR-H-paniculata_contig10279:5753..57941691480598.362772-UTR-H-paniculata_contig10279:5753..5794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10279 5754..5794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928731.623577-CDS-H-paniculata_contig10279:287..5101622928731.623577-CDS-H-paniculata_contig10279:287..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 288..510 -
1691480598.3115685-CDS-H-paniculata_contig10279:287..5101691480598.3115685-CDS-H-paniculata_contig10279:287..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 288..510 -
1622928731.6388533-CDS-H-paniculata_contig10279:1409..14911622928731.6388533-CDS-H-paniculata_contig10279:1409..1491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 1410..1491 -
1691480598.3228505-CDS-H-paniculata_contig10279:1409..14911691480598.3228505-CDS-H-paniculata_contig10279:1409..1491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 1410..1491 -
1622928731.6539695-CDS-H-paniculata_contig10279:3818..38961622928731.6539695-CDS-H-paniculata_contig10279:3818..3896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 3819..3896 -
1691480598.333301-CDS-H-paniculata_contig10279:3818..38961691480598.333301-CDS-H-paniculata_contig10279:3818..3896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 3819..3896 -
1622928731.6706665-CDS-H-paniculata_contig10279:4499..46871622928731.6706665-CDS-H-paniculata_contig10279:4499..4687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 4500..4687 -
1691480598.3477254-CDS-H-paniculata_contig10279:4499..46871691480598.3477254-CDS-H-paniculata_contig10279:4499..4687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 4500..4687 -
1622928731.6861904-CDS-H-paniculata_contig10279:5565..57531622928731.6861904-CDS-H-paniculata_contig10279:5565..5753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 5566..5753 -
1691480598.3554187-CDS-H-paniculata_contig10279:5565..57531691480598.3554187-CDS-H-paniculata_contig10279:5565..5753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10279 5566..5753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10279.187.1prot_H-paniculata_contig10279.187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10279 288..5753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10279.187.1

>prot_H-paniculata_contig10279.187.1 ID=prot_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MELVVASGSNKSGNSSGRRDGFPGDGDVSLFTTSEELLDGGGGFGLELQA
LRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVG
GADVDEDDDGDEDDDGDEDDEEDDAGYASDGERQGFEQLLVQVLELLRAT
AACEEDSQVSGLIGGEGADLGPLMAVNVRCLQLSASSTRAMRNDPSEFDF
EDEDDEGCQPPYTARAAAVALIRDLCQAFPDKVPNVLSDRSMRVDTGYST
HI*
back to top

mRNA from alignment at H-paniculata_contig10279:7..5794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10279.187.1 ID=mRNA_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5788bp|location=Sequence derived from alignment at H-paniculata_contig10279:7..5794- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAATGGGCACAACGCTGGCTTCGTGTTGTCTCGAGGGCAATGGAGTTG GTGGTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGGTCGGAGAGA TGGCTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAAGTGAGGAGC TCTTGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCGCTGCGTACT GTGGTGGTGCTGTTGAAGCACATACCTTCGTGAGTTAGAATTTGTTCTCT GTTTTTTTGGGGGTTTTTTCGGGGGTTTTCTTTGTATCTTTGAAAAAACA ATGTTGATTTTAACAATATCTGTGTTTCGGCACACTTTTTTTCTTGTTCT TCTTGGAATTAAATTTCTCAGTGAGACAGTTCTTCTTGACGCTTTAATTC GTTTTGTAAGTATCGCAGCTTTTGCTTACATTGGAGTTTTGCGAGTGTTT TCTGGGGGGGGGGGTTATGCGTGTCCGGTGTTGGTGTTGGTGTTGAATTC CCAAATTGTGTTGTAGATATGCCATCATTTGGCTACTCTCGACTATTACT GTAGGAGAATACTGATGGCGTTGCGACACATGGCCATCGTTTGCAACTGA AAACAGAGAGTGGACAATGACCCGATCACGTTATCCTCTCTCGTGTCTCA CGTGAACGACTCAGAGCTGTTTGGGCATGATGCCATGATATCATGATCTG ACCAACTTCTCCGCTTGGACTTCTTGGTATACAGCCCGCCTTGGCGCTGT TTCTTGCTTGTTCGTGTCATTATCTAATTTGTTCAAGGGAACATAAAAAT CCAGGTACACACTCACTCCCATGGCTATTTCTTGCTCGGCATGCAGCATC CGAAAAAAATCACCAAACTGAAACTTGAAAGCAGGAGAGCAAAAATTAAC CCGCTCGATCCTTTTCCCCCCCTGAAACTCGTTCGAGGAGGTTTCGAATG TGATTTTCTTGGTTGGAAAAAAAATAACGATTTTTTCAATATCGATTCTC TTTCTCAGATATTTTTGCTTTTTGCATTTATCTTTTTTTTTGGCTGGGTA TCGTTCCATGTCTTTTTCATTTTTTTTATTTTTTTTTCTCATATTTTTCT CCTTCAGGGCATTAGGAGACGGGCACCTGGGACAGCTGTTGCCACCGCTG TGGGAGGTCCTTACTAGAGGATTGACGCACCACGAGTCTTGCGTGCTGCT ACGAAGGGGGGATGTTGGCGGCGCAGATGTCGATGAGGACGATGATGGGG ATGAGGACGATGATGGGGATGAGGACGATGAGGAAGATGACGCAGGTGAG GGAGGGCGAAGCTTGAGCTTTAGCGCTGTTGTTTCGCTCTTTAGCTGCTG CCCCTACTGCCCCTGCTGCTGAAGCTACGGGAGCTTTTGCTCGTGTTGCT AACGCCTGCTGCCGCCCGCAGTGTTATCGTTGACGTTGCTGTGTACAGCG GCAGAGAGAGCGGACTTTAGAGGGCGTGACGTAGTGCGGTCTTTTCCCCT CCGTCGTTTTTTCCCATCCTCAAAAACCAGCTTTTGTCCACGTATGCAGC TTTCTGGCAATGACCATTAAAGTCTTTCGTCTTCTTCCCCCCCCCTCCCT CCACATTTTCTCTTTCTCTGTCTTTCTCTGTCTCTCTGTCGTTTTGTCTG TCTCTATCGCTCTCTATCGCTCTGTTTGTCTCTCTCTATCTCTCTCGGTC TTTCTGTCTTGCTGTCTCTTGATCTTTCTATCGCTCTGTCTGTCTCTCTT TCTCTCTGTCGCTCTGTCGCTCCCTCCCTCTTCCCTCCTCTCCCTCCCCC CTTGCCCCATCTCCCCCTCTCTTTCGCTCTCTCTTCCTCTGGCTGCCCTC TCGCTCTCGCTCCCCATCCGTGTATTATCGTCATTCTCCACATGGAAGGT TACGCTTCGGACGGAGAACGCCAGGGATTCGAGCAGCTGCTCGTCCAGGT CCTGGAGCTCCTGCGCGCCACCGCGGGTACGTAGCTCGTCTGCTTCGCAT GTTCGCTTTTCCACGACTCACAGTAGTACCTGCTAGTGTATGTAAGGGAG TTGCAACGCCCATGCGTGTGCATCCCCCTGGTTGTGAAAACGTTGGTAGC TACTGTGTAAAGAGTATTGGAAGGAAGTGTGCATCGTGGATAATGGCATA TGGCTAGAGAGTTACTGGTACACTGGATAGGATATGAGGAGCTCGAGGGT TTTATTACGGGGCAACGAGGTTGATTTTTATATTTGGAGAGGTTAAGCGA TTTGAAAGTACTCATGTAGGTGTTTTGTGTGCTTCACTCAGGTATAATAT GTACAAAATTTCCACAGCATTACGCTAGACTGACTATTTTTGTCAACACT TGGCCCAAAAAATAATACAGAGCGATGTCAATGAGCTTGGAAACGTAGGG AACCTTGTAAGTAGTGATAGTCGATGAGAGAAATGCTGTGCACCGATGTC CTCGAGAAAATTCGAAAATATTCCATTGCTCTCCAGAGCACAAACGACTG TTGTATATACCGTGAAAAATTGCGCGAAAGAATGCAAAAGTTGTATAAAT GTCTAAAATCATTTTCCAATCTCTTGTTCGGGAGCAACAAACGTGGATAT ATTGCGCTAGGCTTATGCAGAGGCTACACAAGTGGACAGGCTAACATCCT TTGTAACTTTGTATACTGTCAGGACTGAAGACCGTACGTGTCGGGAGCGA TGATTGTGCGATATTTGGAGAAGCACAACTTTTGTTTTAGGTCGACCTCC TGGTTCTCCCGTTGTATGGTATTCGCTCGAATCACCACGAGCCGCTAGCT ATGCACTATCTTTTATGTAATTATTTTCTTTCGAAGATACCGACTATTTG AAGTTATACTTGTTAATACATCAGTCGTAGCGCGTTGTTGAAATCATGAT AACGTTGGCTGTAGACCTTGAACCACGACGTGTCCAAGTGTCTCGTGAAG CTCTACTATAGAGCGACCGGCTCGTGGTGATTCGAATGAATACCACATAA ACACGTGGAATCAGGAGGTCCACGCAAAATAAAAGTTGTGTTTCTCTATA TAAAGCATCATCGTCGCTCTCGAAACGTACGAACTTCAGCGCTGACGGTA GATGGTTATAAGGCGTGTTAGTCCCTGCAATTGTACCTCTGTGCCTCTGC ATGAGTGTAGCGCGAGATATCCACGATTGTCGTTGCTGGAGTGAGCACTG GTGCCCGGGGGTGTTGACAACATCTAAAATTTTGGAAATATAAATGATGA AATCGCTCCAGGCGTAACACTCTTCTGTTATTTTGCGACTCGCTGGTTTT GATGATGACCCTGGGTTTCGATATTTTAGCAAGAATATATTCCTGTACCG CAAGTATTTGAGTTTCTCGAAATGTGTTACCACCTGGTAAAACGTTTATC GCTAATAGCACTGTTTTTGGCAACCGCACTTCAAATCCTTCTCCCGTCTA TATATATATATTTTTTTTTCTTGTTTCCCTTTTTGATCGCAGCGTTTGTA GGGATATTTTTTTTGTCTACGCGCAATGCTGTACGTACTTGGCGTATGTT GTGCGTGATGTGGTGTTACATCTTGTGCGATTGCAGTAGAACTTTCCCTG TCGTGCCCATTTTGTAGGGTCTTATCGGGTGTGGGGTTCGGTTGACTGTG CGCGCATGACAAAGCACTCGATGGCATGCGTGTGGAGGAGTAAATTGTTT CACATCGGCAAAAATGGTTGATACGAGTGTGAAAAAAAATCGGACCAATC AGATTGTTTGGTCTGTTGAAAGTTGTAAATCTCTCTCTCTATATATAGTA CTTTTTGTGTCATTTTCATTGCCCTCGTCTAGCTCATGCCAACCCCCCTA ATTCATAGGAGCCGATCTATCTACATATCATCTACATTCAAATTACTCTA TTGTATTGTAGACGACTCGCCTTCTCTTTGCGAAGCGTTTGAAGTGGGAG TTTTCGATCTGCTACGTCTTGAGAACAAGCCGGTGCGTGCTGCAACTTTG TCGACATGACATCATGCGGCCCAATTGTTGCCGTCTCGACCCGCTCACAT GGACAAGTGCGTATTCGTAACTGACTATCACCGTTTATGCGACGCAATTC GTGCCGTTTCGAATCCATCCTTAAGTAAACATGATACTCCAGTTCTTGAT ATCTACAAGATATATCTCTCTATTCATAGGAGCCGATCTATCTACGTATC ATCTATATTTTAAATTACTCTCCCCCCTCCCCGAACCCCAAACGTCTTCC TTCTGCTCATGCCCGCGGTCACAACCGTCGTCAATGGTTGTCGATGACGT CAGCATGCGAAGAGGATTCTCAGGTTTCGGGGTTGATAGGGGGTGAGGGG GCTGATCTGGGCCCGCTGATGGCCGTTAATGTTAGGTGAGAGGCATTTTG GCGCGTTTGCTGTTGGGTGTTGCGTCTTGTATTTTGGGAGAGAATTGCGC GCGGGAAAAAGGGGAGGGAGGAGCACGTCGGGGATCTTGTTGGATGGGGT GTGTGCTTTCGACGATGCCAAGTGGCGTGCGGCGTATTTTTGGGTCTACT CGTGGGATTGCTCGGTTGCTGTAGAGGTGTTGATTCATTTATGTATTCAT TCTTCTATTTGTTCGTTCGTTCATTCATCCGTTTGTTTCATTCATCCATG TATGCGAATATTATTTGTTTTTTCCTTCGTCTGAATTTTCATTCATTCGC TCTTTTTTTCCTCCGTTTATATCATTCAGTTGTTCGTTCTTCGTGCATTA TTTTGCATTGATGCACTGATGCATTGATTCGTTTGATCAGTCGTCGTGTG CTCATTTACTCACTCTCCATGTATTTCATCAAGTAGTTCATGTGCTTCTT AATGCCTTCATGCAGTCATACATTCATACATTCCTCCGGATTCAGAGCAG AACGAAACCGAGGGTGCATCGCCTCTAAAGCCTGCCATGTCACATTGCAC ACATGAACGATGGTAGGAACTACCAAGCACACAGTCAGTACTGGTACAGC AGGATATATTTACGTGTAGTCAGTCCTGGTTTTTTCGTATTTGTCCAAAT ATTATGTAAGAACGACCTGTATCCGCCCGTACTCAGTCCTCCCGAGGGAG GACGTGTGGTGAATGATCTAATAGCTACGATATGCAATGCAAAACATGAC TACGTCCCCCTAATGATTTAGTTTTGCTATTACATTTACGCGACCGCAGA TTGTTGCCAGTTCCATAACGTCAACATGGTGTGATTTTTACTACAATAAT GAGTACGCCCGCCCCCCCCTCCTCGCATGCACAGGTGTCTGCAGCTCTCG GCCAGTAGCACTCGTGCAATGCGGAATGACCCGAGTGAATTTGACTTCGA AGACGAGGATGATGAAGGCTGTCAACCCCCCTACACGGCCAGGGCTGCCG CGGTTGCGTTAATCCGAGACTTGTGCCAGGCCTTCCCAGATAAGGTGCCA AATGTGTTGAGCGATCGTTCGATGAGGGTGGATACAGGGTATTCGACCCA TATTTGATCCGAGACATGATCCGAAGCTGGTCGGACCGGGGAGCGGAGGG GCGTCACACGAAGGATTTTAACACTACCATAGTCGATTGAACTACAACTC TGAACTTCATGTAATGACTCTATTGTACATGGGTTAACGTTATGCAGTTT GTGGAATAAAGTGGAACATGGAACATTATGACGACAGATTACACAGTCGG ATATGATTGGTTTACGGAAAGTGTCGGTTCATGTTTGGAGAGAAATGGGG CGTGACTTCGACGACGACATGGATGCCCGTCGAGGTCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10279:7..5794-

>mRNA_H-paniculata_contig10279.187.1 ID=mRNA_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig10279:7..5794- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTTGGTGGTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGG
TCGGAGAGATGGCTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAA
GTGAGGAGCTCTTGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCG
CTGCGTACTGTGGTGGTGCTGTTGAAGCACATACCTTCATGGAGTTGGTG
GTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGGTCGGAGAGATGG
CTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAAGTGAGGAGCTCT
TGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCGCTGCGTACTGTG
GTGGTGCTGTTGAAGCACATACCTTCGGCATTAGGAGACGGGCACCTGGG
ACAGCTGTTGCCACCGCTGTGGGAGGTCCTTACTAGAGGATTGACGCACC
ACGAGTCTTGCGTGCTGCTACGAAGGGGGGATGTTGGCGGCGCAGATGTC
GATGAGGACGATGATGGGGATGAGGACGATGATGGGGATGAGGACGATGA
GGAAGATGACGCAGGGCATTAGGAGACGGGCACCTGGGACAGCTGTTGCC
ACCGCTGTGGGAGGTCCTTACTAGAGGATTGACGCACCACGAGTCTTGCG
TGCTGCTACGAAGGGGGGATGTTGGCGGCGCAGATGTCGATGAGGACGAT
GATGGGGATGAGGACGATGATGGGGATGAGGACGATGAGGAAGATGACGC
AGGTTACGCTTCGGACGGAGAACGCCAGGGATTCGAGCAGCTGCTCGTCC
AGGTCCTGGAGCTCCTGCGCGCCACCGCGGGTTACGCTTCGGACGGAGAA
CGCCAGGGATTCGAGCAGCTGCTCGTCCAGGTCCTGGAGCTCCTGCGCGC
CACCGCGGCATGCGAAGAGGATTCTCAGGTTTCGGGGTTGATAGGGGGTG
AGGGGGCTGATCTGGGCCCGCTGATGGCCGTTAATGTTAGCATGCGAAGA
GGATTCTCAGGTTTCGGGGTTGATAGGGGGTGAGGGGGCTGATCTGGGCC
CGCTGATGGCCGTTAATGTTAGGTGTCTGCAGCTCTCGGCCAGTAGCACT
CGTGCAATGCGGAATGACCCGAGTGAATTTGACTTCGAAGACGAGGATGA
TGAAGGCTGTCAACCCCCCTACACGGCCAGGGCTGCCGCGGTTGCGTTAA
TCCGAGACTTGTGCCAGGCCTTCCCAGATAAGGTGCCAAATGTGTTGAGC
GATCGTTCGATGAGGGTGGATACAGGGTATTCGACCCATATTTGAGTGTC
TGCAGCTCTCGGCCAGTAGCACTCGTGCAATGCGGAATGACCCGAGTGAA
TTTGACTTCGAAGACGAGGATGATGAAGGCTGTCAACCCCCCTACACGGC
CAGGGCTGCCGCGGTTGCGTTAATCCGAGACTTGTGCCAGGCCTTCCCAG
ATAAGGTGCCAAATGTGTTGAGCGATCGTTCGATGAGGGTGGATACAGGG
TATTCGACCCATATTTGA
back to top