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Homology
BLAST of mRNA_H-paniculata_contig10279.187.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI) HSP 1 Score: 167 bits (424), Expect = 2.830e-42 Identity = 114/224 (50.89%), Postives = 147/224 (65.62%), Query Frame = 3
Query: 171 FGLELQALRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVGGADVDEDDDGXXXXXXXXXXXXXDAGYASDGERQGFEQLLVQVLELLRATAACEEDSQVSGLIGGEGADLGPLMAVNVRCLQLSASSTRAMRNDPSEF---DFEDEDDE----------------GCQPPYTARAAAVALIRDLCQAFPDK-VPNVLSD-RSMRVDT 779
FG+EL+ LRT +VLL H+PS +GDGHLGQLLPPLW++LT G HE +L G+ G D DE XXXXXXXXX YASDGERQG ++L+VQ LELL A+AAC D QVSGL+GGEGA +G L+AV +R LQL + S R+ P+EF + E+ + + G P TAR+A +ALIRDLC+AFPDK VP ++++ +S VD+
Sbjct: 322 FGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLWQLLTDGRERHEQSMLSSDGN--GEDGDE--------XXXXXXXXXXXXYASDGERQGLDELIVQSLELLAASAACP-DPQVSGLLGGEGAGVGSLLAVVIRYLQLPSESCALWRDSPNEFVVAELEEGEGDXXXXXXXXXXXXXXGAGRHPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDS 534
BLAST of mRNA_H-paniculata_contig10279.187.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE) HSP 1 Score: 154 bits (390), Expect = 8.750e-38 Identity = 109/209 (52.15%), Postives = 136/209 (65.07%), Query Frame = 3
Query: 171 FGLELQALRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVGGADVDEDDDGXXXXXXXXXXXXXDAGYASDGERQGFEQLLVQVLELLRATAACEEDSQVSGLIGGEGADLGPLMAVNVR----CLQLSASSTRAMRNDPSEFDFEDEDDEGCQPPYTARAAAVALIRDLCQAFPDKV-PNVLSD-RSMRVDT 779
FG+EL+ LRT +VLL H+PS +GDGHLGQLLPPLW++LT G HE +L GD G D XXXXXXXXXXX YASDGERQG ++L+VQ LELL ATAAC D QVSGL+GGEGA +G L+AV +R C+ A+ R G P TAR+A +ALIR+LC+AFPDKV P ++++ +S VD+
Sbjct: 209 FGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLWQLLTDGRERHERSMLAGGGD--GEDX--------XXXXXXXXXXXXXXYASDGERQGLDELIVQSLELLAATAACP-DPQVSGLLGGEGAGVGSLLAVVIRWRITCIYQCANHRRGGGGGA-----------GRHPVSTARSAGLALIRELCEAFPDKVVPALIAEAKSALVDS 395
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 170.2 |
Seed ortholog evalue | 1.2e-39 |
Seed eggNOG ortholog | 2880.D7G8B3 |
Preferred name | IPO9 |
KEGG rclass | RC00002,RC00017 |
KEGG ko | ko:K00876,ko:K20224 |
KEGG TC | 1.I.1 |
KEGG Reaction | R00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232 |
KEGG Pathway | ko00240,ko00983,ko01100,map00240,map00983,map01100 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363 |
EggNOG free text desc. | Ran GTPase binding |
EggNOG OGs | COG5657@1,KOG2274@2759 |
EC | 2.7.1.48 |
COG Functional cat. | D |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000,ko03009 |
Exons | 5 |
Model size | 1081 |
Cds size | 759 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10279.187.1 >prot_H-paniculata_contig10279.187.1 ID=prot_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MELVVASGSNKSGNSSGRRDGFPGDGDVSLFTTSEELLDGGGGFGLELQA LRTVVVLLKHIPSALGDGHLGQLLPPLWEVLTRGLTHHESCVLLRRGDVG GADVDEDDDGDEDDDGDEDDEEDDAGYASDGERQGFEQLLVQVLELLRAT AACEEDSQVSGLIGGEGADLGPLMAVNVRCLQLSASSTRAMRNDPSEFDF EDEDDEGCQPPYTARAAAVALIRDLCQAFPDKVPNVLSDRSMRVDTGYST HI* back to topmRNA from alignment at H-paniculata_contig10279:7..5794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10279.187.1 ID=mRNA_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5788bp|location=Sequence derived from alignment at H-paniculata_contig10279:7..5794- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGCAATGGGCACAACGCTGGCTTCGTGTTGTCTCGAGGGCAATGGAGTTG
GTGGTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGGTCGGAGAGA
TGGCTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAAGTGAGGAGC
TCTTGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCGCTGCGTACT
GTGGTGGTGCTGTTGAAGCACATACCTTCGTGAGTTAGAATTTGTTCTCT
GTTTTTTTGGGGGTTTTTTCGGGGGTTTTCTTTGTATCTTTGAAAAAACA
ATGTTGATTTTAACAATATCTGTGTTTCGGCACACTTTTTTTCTTGTTCT
TCTTGGAATTAAATTTCTCAGTGAGACAGTTCTTCTTGACGCTTTAATTC
GTTTTGTAAGTATCGCAGCTTTTGCTTACATTGGAGTTTTGCGAGTGTTT
TCTGGGGGGGGGGGTTATGCGTGTCCGGTGTTGGTGTTGGTGTTGAATTC
CCAAATTGTGTTGTAGATATGCCATCATTTGGCTACTCTCGACTATTACT
GTAGGAGAATACTGATGGCGTTGCGACACATGGCCATCGTTTGCAACTGA
AAACAGAGAGTGGACAATGACCCGATCACGTTATCCTCTCTCGTGTCTCA
CGTGAACGACTCAGAGCTGTTTGGGCATGATGCCATGATATCATGATCTG
ACCAACTTCTCCGCTTGGACTTCTTGGTATACAGCCCGCCTTGGCGCTGT
TTCTTGCTTGTTCGTGTCATTATCTAATTTGTTCAAGGGAACATAAAAAT
CCAGGTACACACTCACTCCCATGGCTATTTCTTGCTCGGCATGCAGCATC
CGAAAAAAATCACCAAACTGAAACTTGAAAGCAGGAGAGCAAAAATTAAC
CCGCTCGATCCTTTTCCCCCCCTGAAACTCGTTCGAGGAGGTTTCGAATG
TGATTTTCTTGGTTGGAAAAAAAATAACGATTTTTTCAATATCGATTCTC
TTTCTCAGATATTTTTGCTTTTTGCATTTATCTTTTTTTTTGGCTGGGTA
TCGTTCCATGTCTTTTTCATTTTTTTTATTTTTTTTTCTCATATTTTTCT
CCTTCAGGGCATTAGGAGACGGGCACCTGGGACAGCTGTTGCCACCGCTG
TGGGAGGTCCTTACTAGAGGATTGACGCACCACGAGTCTTGCGTGCTGCT
ACGAAGGGGGGATGTTGGCGGCGCAGATGTCGATGAGGACGATGATGGGG
ATGAGGACGATGATGGGGATGAGGACGATGAGGAAGATGACGCAGGTGAG
GGAGGGCGAAGCTTGAGCTTTAGCGCTGTTGTTTCGCTCTTTAGCTGCTG
CCCCTACTGCCCCTGCTGCTGAAGCTACGGGAGCTTTTGCTCGTGTTGCT
AACGCCTGCTGCCGCCCGCAGTGTTATCGTTGACGTTGCTGTGTACAGCG
GCAGAGAGAGCGGACTTTAGAGGGCGTGACGTAGTGCGGTCTTTTCCCCT
CCGTCGTTTTTTCCCATCCTCAAAAACCAGCTTTTGTCCACGTATGCAGC
TTTCTGGCAATGACCATTAAAGTCTTTCGTCTTCTTCCCCCCCCCTCCCT
CCACATTTTCTCTTTCTCTGTCTTTCTCTGTCTCTCTGTCGTTTTGTCTG
TCTCTATCGCTCTCTATCGCTCTGTTTGTCTCTCTCTATCTCTCTCGGTC
TTTCTGTCTTGCTGTCTCTTGATCTTTCTATCGCTCTGTCTGTCTCTCTT
TCTCTCTGTCGCTCTGTCGCTCCCTCCCTCTTCCCTCCTCTCCCTCCCCC
CTTGCCCCATCTCCCCCTCTCTTTCGCTCTCTCTTCCTCTGGCTGCCCTC
TCGCTCTCGCTCCCCATCCGTGTATTATCGTCATTCTCCACATGGAAGGT
TACGCTTCGGACGGAGAACGCCAGGGATTCGAGCAGCTGCTCGTCCAGGT
CCTGGAGCTCCTGCGCGCCACCGCGGGTACGTAGCTCGTCTGCTTCGCAT
GTTCGCTTTTCCACGACTCACAGTAGTACCTGCTAGTGTATGTAAGGGAG
TTGCAACGCCCATGCGTGTGCATCCCCCTGGTTGTGAAAACGTTGGTAGC
TACTGTGTAAAGAGTATTGGAAGGAAGTGTGCATCGTGGATAATGGCATA
TGGCTAGAGAGTTACTGGTACACTGGATAGGATATGAGGAGCTCGAGGGT
TTTATTACGGGGCAACGAGGTTGATTTTTATATTTGGAGAGGTTAAGCGA
TTTGAAAGTACTCATGTAGGTGTTTTGTGTGCTTCACTCAGGTATAATAT
GTACAAAATTTCCACAGCATTACGCTAGACTGACTATTTTTGTCAACACT
TGGCCCAAAAAATAATACAGAGCGATGTCAATGAGCTTGGAAACGTAGGG
AACCTTGTAAGTAGTGATAGTCGATGAGAGAAATGCTGTGCACCGATGTC
CTCGAGAAAATTCGAAAATATTCCATTGCTCTCCAGAGCACAAACGACTG
TTGTATATACCGTGAAAAATTGCGCGAAAGAATGCAAAAGTTGTATAAAT
GTCTAAAATCATTTTCCAATCTCTTGTTCGGGAGCAACAAACGTGGATAT
ATTGCGCTAGGCTTATGCAGAGGCTACACAAGTGGACAGGCTAACATCCT
TTGTAACTTTGTATACTGTCAGGACTGAAGACCGTACGTGTCGGGAGCGA
TGATTGTGCGATATTTGGAGAAGCACAACTTTTGTTTTAGGTCGACCTCC
TGGTTCTCCCGTTGTATGGTATTCGCTCGAATCACCACGAGCCGCTAGCT
ATGCACTATCTTTTATGTAATTATTTTCTTTCGAAGATACCGACTATTTG
AAGTTATACTTGTTAATACATCAGTCGTAGCGCGTTGTTGAAATCATGAT
AACGTTGGCTGTAGACCTTGAACCACGACGTGTCCAAGTGTCTCGTGAAG
CTCTACTATAGAGCGACCGGCTCGTGGTGATTCGAATGAATACCACATAA
ACACGTGGAATCAGGAGGTCCACGCAAAATAAAAGTTGTGTTTCTCTATA
TAAAGCATCATCGTCGCTCTCGAAACGTACGAACTTCAGCGCTGACGGTA
GATGGTTATAAGGCGTGTTAGTCCCTGCAATTGTACCTCTGTGCCTCTGC
ATGAGTGTAGCGCGAGATATCCACGATTGTCGTTGCTGGAGTGAGCACTG
GTGCCCGGGGGTGTTGACAACATCTAAAATTTTGGAAATATAAATGATGA
AATCGCTCCAGGCGTAACACTCTTCTGTTATTTTGCGACTCGCTGGTTTT
GATGATGACCCTGGGTTTCGATATTTTAGCAAGAATATATTCCTGTACCG
CAAGTATTTGAGTTTCTCGAAATGTGTTACCACCTGGTAAAACGTTTATC
GCTAATAGCACTGTTTTTGGCAACCGCACTTCAAATCCTTCTCCCGTCTA
TATATATATATTTTTTTTTCTTGTTTCCCTTTTTGATCGCAGCGTTTGTA
GGGATATTTTTTTTGTCTACGCGCAATGCTGTACGTACTTGGCGTATGTT
GTGCGTGATGTGGTGTTACATCTTGTGCGATTGCAGTAGAACTTTCCCTG
TCGTGCCCATTTTGTAGGGTCTTATCGGGTGTGGGGTTCGGTTGACTGTG
CGCGCATGACAAAGCACTCGATGGCATGCGTGTGGAGGAGTAAATTGTTT
CACATCGGCAAAAATGGTTGATACGAGTGTGAAAAAAAATCGGACCAATC
AGATTGTTTGGTCTGTTGAAAGTTGTAAATCTCTCTCTCTATATATAGTA
CTTTTTGTGTCATTTTCATTGCCCTCGTCTAGCTCATGCCAACCCCCCTA
ATTCATAGGAGCCGATCTATCTACATATCATCTACATTCAAATTACTCTA
TTGTATTGTAGACGACTCGCCTTCTCTTTGCGAAGCGTTTGAAGTGGGAG
TTTTCGATCTGCTACGTCTTGAGAACAAGCCGGTGCGTGCTGCAACTTTG
TCGACATGACATCATGCGGCCCAATTGTTGCCGTCTCGACCCGCTCACAT
GGACAAGTGCGTATTCGTAACTGACTATCACCGTTTATGCGACGCAATTC
GTGCCGTTTCGAATCCATCCTTAAGTAAACATGATACTCCAGTTCTTGAT
ATCTACAAGATATATCTCTCTATTCATAGGAGCCGATCTATCTACGTATC
ATCTATATTTTAAATTACTCTCCCCCCTCCCCGAACCCCAAACGTCTTCC
TTCTGCTCATGCCCGCGGTCACAACCGTCGTCAATGGTTGTCGATGACGT
CAGCATGCGAAGAGGATTCTCAGGTTTCGGGGTTGATAGGGGGTGAGGGG
GCTGATCTGGGCCCGCTGATGGCCGTTAATGTTAGGTGAGAGGCATTTTG
GCGCGTTTGCTGTTGGGTGTTGCGTCTTGTATTTTGGGAGAGAATTGCGC
GCGGGAAAAAGGGGAGGGAGGAGCACGTCGGGGATCTTGTTGGATGGGGT
GTGTGCTTTCGACGATGCCAAGTGGCGTGCGGCGTATTTTTGGGTCTACT
CGTGGGATTGCTCGGTTGCTGTAGAGGTGTTGATTCATTTATGTATTCAT
TCTTCTATTTGTTCGTTCGTTCATTCATCCGTTTGTTTCATTCATCCATG
TATGCGAATATTATTTGTTTTTTCCTTCGTCTGAATTTTCATTCATTCGC
TCTTTTTTTCCTCCGTTTATATCATTCAGTTGTTCGTTCTTCGTGCATTA
TTTTGCATTGATGCACTGATGCATTGATTCGTTTGATCAGTCGTCGTGTG
CTCATTTACTCACTCTCCATGTATTTCATCAAGTAGTTCATGTGCTTCTT
AATGCCTTCATGCAGTCATACATTCATACATTCCTCCGGATTCAGAGCAG
AACGAAACCGAGGGTGCATCGCCTCTAAAGCCTGCCATGTCACATTGCAC
ACATGAACGATGGTAGGAACTACCAAGCACACAGTCAGTACTGGTACAGC
AGGATATATTTACGTGTAGTCAGTCCTGGTTTTTTCGTATTTGTCCAAAT
ATTATGTAAGAACGACCTGTATCCGCCCGTACTCAGTCCTCCCGAGGGAG
GACGTGTGGTGAATGATCTAATAGCTACGATATGCAATGCAAAACATGAC
TACGTCCCCCTAATGATTTAGTTTTGCTATTACATTTACGCGACCGCAGA
TTGTTGCCAGTTCCATAACGTCAACATGGTGTGATTTTTACTACAATAAT
GAGTACGCCCGCCCCCCCCTCCTCGCATGCACAGGTGTCTGCAGCTCTCG
GCCAGTAGCACTCGTGCAATGCGGAATGACCCGAGTGAATTTGACTTCGA
AGACGAGGATGATGAAGGCTGTCAACCCCCCTACACGGCCAGGGCTGCCG
CGGTTGCGTTAATCCGAGACTTGTGCCAGGCCTTCCCAGATAAGGTGCCA
AATGTGTTGAGCGATCGTTCGATGAGGGTGGATACAGGGTATTCGACCCA
TATTTGATCCGAGACATGATCCGAAGCTGGTCGGACCGGGGAGCGGAGGG
GCGTCACACGAAGGATTTTAACACTACCATAGTCGATTGAACTACAACTC
TGAACTTCATGTAATGACTCTATTGTACATGGGTTAACGTTATGCAGTTT
GTGGAATAAAGTGGAACATGGAACATTATGACGACAGATTACACAGTCGG
ATATGATTGGTTTACGGAAAGTGTCGGTTCATGTTTGGAGAGAAATGGGG
CGTGACTTCGACGACGACATGGATGCCCGTCGAGGTCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10279:7..5794- >mRNA_H-paniculata_contig10279.187.1 ID=mRNA_H-paniculata_contig10279.187.1|Name=mRNA_H-paniculata_contig10279.187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig10279:7..5794- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAGTTGGTGGTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGG TCGGAGAGATGGCTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAA GTGAGGAGCTCTTGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCG CTGCGTACTGTGGTGGTGCTGTTGAAGCACATACCTTCATGGAGTTGGTG GTAGCCAGCGGTAGCAACAAGAGTGGCAATAGCAGCGGTCGGAGAGATGG CTTTCCGGGAGACGGGGACGTCAGTCTTTTTACCACAAGTGAGGAGCTCT TGGATGGTGGTGGTGGCTTTGGTCTGGAGCTGCAGGCGCTGCGTACTGTG GTGGTGCTGTTGAAGCACATACCTTCGGCATTAGGAGACGGGCACCTGGG ACAGCTGTTGCCACCGCTGTGGGAGGTCCTTACTAGAGGATTGACGCACC ACGAGTCTTGCGTGCTGCTACGAAGGGGGGATGTTGGCGGCGCAGATGTC GATGAGGACGATGATGGGGATGAGGACGATGATGGGGATGAGGACGATGA GGAAGATGACGCAGGGCATTAGGAGACGGGCACCTGGGACAGCTGTTGCC ACCGCTGTGGGAGGTCCTTACTAGAGGATTGACGCACCACGAGTCTTGCG TGCTGCTACGAAGGGGGGATGTTGGCGGCGCAGATGTCGATGAGGACGAT GATGGGGATGAGGACGATGATGGGGATGAGGACGATGAGGAAGATGACGC AGGTTACGCTTCGGACGGAGAACGCCAGGGATTCGAGCAGCTGCTCGTCC AGGTCCTGGAGCTCCTGCGCGCCACCGCGGGTTACGCTTCGGACGGAGAA CGCCAGGGATTCGAGCAGCTGCTCGTCCAGGTCCTGGAGCTCCTGCGCGC CACCGCGGCATGCGAAGAGGATTCTCAGGTTTCGGGGTTGATAGGGGGTG AGGGGGCTGATCTGGGCCCGCTGATGGCCGTTAATGTTAGCATGCGAAGA GGATTCTCAGGTTTCGGGGTTGATAGGGGGTGAGGGGGCTGATCTGGGCC CGCTGATGGCCGTTAATGTTAGGTGTCTGCAGCTCTCGGCCAGTAGCACT CGTGCAATGCGGAATGACCCGAGTGAATTTGACTTCGAAGACGAGGATGA TGAAGGCTGTCAACCCCCCTACACGGCCAGGGCTGCCGCGGTTGCGTTAA TCCGAGACTTGTGCCAGGCCTTCCCAGATAAGGTGCCAAATGTGTTGAGC GATCGTTCGATGAGGGTGGATACAGGGTATTCGACCCATATTTGAGTGTC TGCAGCTCTCGGCCAGTAGCACTCGTGCAATGCGGAATGACCCGAGTGAA TTTGACTTCGAAGACGAGGATGATGAAGGCTGTCAACCCCCCTACACGGC CAGGGCTGCCGCGGTTGCGTTAATCCGAGACTTGTGCCAGGCCTTCCCAG ATAAGGTGCCAAATGTGTTGAGCGATCGTTCGATGAGGGTGGATACAGGG TATTCGACCCATATTTGA back to top
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