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Homology
BLAST of mRNA_H-paniculata_contig10278.186.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI) HSP 1 Score: 230 bits (586), Expect = 9.780e-66 Identity = 126/265 (47.55%), Postives = 155/265 (58.49%), Query Frame = 1
Query: 1 CPESPDLFASTGAGHLLSIWEASDTFQPLCCYPLRAGRCEGGNVIWAPGRSGIWISGTMRPFLMFLDFYEGAG----PPVVLSAGIVEDSNPFEDAVFGLDVAREDPVPAPGSLSQHTHLTAWTAPSGQVRVTATGCRECAPSDQYHLAAGFVDRFGKRSKKSQQLDLKENRVMHRLEYISP------QSDP------------------------VPAGRAADASDEGQRQSKRPFIRVYVGTKSEGTRVVKWREASAPLGGLL 693
CP SP+LFA+TGAGH+L++W+ SD F+PLC P++ RC G V W PG SGIW+S + RPF+ FLDF+EG G P VV V D P EDA +GLDV R+ P G Q HL AWTAPSGQVRV+A CRE AP +HLAA F+++ K SKKSQ+L L E+RVMHRLEY+ P Q DP V AG A G + P++RV+ G +SEG +KW EA PL GLL
Sbjct: 1286 CPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTTVRWGPGGSGIWVSASTRPFIFFLDFFEGGGAGNVPAVVQEGRGVRDVVPLEDATYGLDVMRKPGQPDHG---QSIHLAAWTAPSGQVRVSAARCREVAPLQHHHLAAAFLEQCRK-SKKSQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWCTAEGDRVNDAAAAARTTWMLGAVGAGARAGPPSMGGGTAADPYLRVFTGAESEGLLAIKWHEAMPPLSGLL 1546
BLAST of mRNA_H-paniculata_contig10278.186.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE) HSP 1 Score: 172 bits (437), Expect = 9.350e-46 Identity = 109/276 (39.49%), Postives = 144/276 (52.17%), Query Frame = 1
Query: 1 CPESPDLFASTGAGHLLSIWEASDTFQPLCCYPLRAGRCEGGNVIWAPGRSG---------------IWISGTMRPFLM---FLDFYEGAGP-------PVVLSAGI-VEDSNPFEDAVFGLDVAREDPVPAPGSLSQHTHLTAWTAPSGQVRVTATGCRECAPSDQYHLAAGFVDRFGKRSKKSQQLDLKENRVMHRLE---YISPQSD----------------PVPAGRAADASDEGQRQSKRPFIRVYVGTKSEGTRVVKWREASAPLGGLL 693
CP SP+LFA+TGAGH+L++W+ SD F+PLC P++ RC G +V W PG ++ SG +R L + GP P V+ G + D P EDA +GLDV R+ P G Q HL AWTAPSGQ+RV+A CRE AP +HLAA F + + SKKSQ+L L E+RVMHR+E + + + D V AG A G + P++RV+ G +SEG +KW EA PL GLL
Sbjct: 901 CPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTSVRWGPGGMMRNRLPTPISCWSLCFLFSSGALREVLYRDHATQSFSAKGPRGGAENLPAVVQEGRGIRDVVPLEDATYGLDVMRKPGQPDHG---QSIHLAAWTAPSGQIRVSAARCREVAPWQHHHLAAAFPGQC-RGSKKSQRLQLLEHRVMHRVEGDPWCTAKVDRFNEAAAQARTSWMLGAVGAGARAGPPSMGGGTAADPYLRVFTGAESEGLLAIKWHEAMPPLSGLL 1172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 693 |
Cds size | 693 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10278.186.1 >prot_H-paniculata_contig10278.186.1 ID=prot_H-paniculata_contig10278.186.1|Name=mRNA_H-paniculata_contig10278.186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
CPESPDLFASTGAGHLLSIWEASDTFQPLCCYPLRAGRCEGGNVIWAPGR SGIWISGTMRPFLMFLDFYEGAGPPVVLSAGIVEDSNPFEDAVFGLDVAR EDPVPAPGSLSQHTHLTAWTAPSGQVRVTATGCRECAPSDQYHLAAGFVD RFGKRSKKSQQLDLKENRVMHRLEYISPQSDPVPAGRAADASDEGQRQSK RPFIRVYVGTKSEGTRVVKWREASAPLGGLL back to topmRNA from alignment at H-paniculata_contig10278:1453..8104- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10278.186.1 ID=mRNA_H-paniculata_contig10278.186.1|Name=mRNA_H-paniculata_contig10278.186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6652bp|location=Sequence derived from alignment at H-paniculata_contig10278:1453..8104- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCCCAGAATCTCCTGATCTCTTTGCGTCGACTGGCGCTGGACACCTGTT
GTCCATTTGGGAAGCATCGGACACGTTTCAGCCGCTGTGCTGTTATCCTC
TGCGGGCCGGACGGTGCGAGGGAGGCAACGTGATATGGGCACCAGGAAGG
TGACAAAACGATGCAGTGTAGCAATGCTTCTTGGAAGTAGGAGCTGTGTG
TGTGTGTAGGTGTGTAGGTGTGTTGAACGACTGCTAGAGAATTTACGTAG
TCTGCAGCACGTTCCTCTTGATGTTCTGGATGTAACTGTTTTGTGACATG
TCGGTTCGACGTCGGGCGTCGAGACCGTATCTAATTCAATTCTATTTTAG
CAATTAAGTACTCGGCAAGAGCGCTCCCGAGCATCTACCTCCAGCTGCAT
CGCTTACAGCACGTGTTCCTATGCAGTAGGTCATGAGCCTCGCAGTGAAC
TATATGCTGAGATTAGAGGATCCGGTCTTAGTGGATATATCGACAAAGTA
ACGTTCAACGGCAGCGTTGAGTACTTTACCGAGTGGAATGCTCGCATGGT
AACCCGGCCACCCTACCCCCCCCCGTTCCCTCCGTGGTTGTGTTGGATTA
TGACATTATCAGCGTGCGGTGCTGGGGTAATGGCTTACATTGTGCGGTAC
TTGTTGATAGATGGTGATCGTTGTCGTCGTTGTTGTAGTTTTGACACACA
TTTTTTATCCTGTACTCGAATATCTCTTGAAGGAATCTTCATGCAAGCGT
AGCGAGTCCCCCCAGAGCAAGCGCCGCGAATCTCTGGGTCGAGGACGAGC
AAGCACAAAATATACGAGTTAGCGTAGCCCTGGTCATGTTCCACCACTAG
TCATATACTTTTTTTCTTCTTTTTTTTAAGCTGGTGGCGTTGTGTTCTCG
AGAAATGAGCAAGCCGTTGAATGGTTGAAAAGAACAAGAGTCTATCTCAC
GATAACGATGAATATTCAATAAATAACAATCTCTGGCGTGGGTTTTTGTA
ACGATATAAATTTTCATGTCGCTAAAGCGGCCGGCTCCTTCGTAAGTTCT
CGGGAGCAAGGAGCTTTGTTCCTATAAGAGCGATTCCCGATGATGTTGAA
GGGGGGAGGGGGGGGGGGGTGATGTACATACTACCTGCTCTCCGTTTACT
CCATGGTGCTCTTGCTTACACCCTTTGGGACTTCAAAATAAGTAGACAAC
GGGTCAACATATATATATATGTTATTGTTAGTTATAGGTACGTTATACGT
GAGAACCAGATATGACTGATCGGAAATACACACACTTGACCGAACAAGCG
TACTTTTTCGTTTGGTTTTGCGTCGTGGATCAGTTCGTCTATCGGAACCT
CCGGTTCAAAGCTGGAATTGTACCGTAATGCCTGCGTTCTATCGTGCGGT
GGGGACAGTAATAGTCCAGCCCCACTCTCTCGTCAACGTTATAATTGACG
GCGGCGGTATCCTCTTGAAAGTGTTGTTCTCCTTTCTCCGGCCTTTTTGT
TCTTGCCACTTATGTGGAGAGCACGTTCCTGACGTTCCTGGGGTTCCTGA
ACCCCGAACCCCTACACAACGACTAATGGTATTTTGTCCCTTTCTCGGAA
CAGCTTTCTAGCTGTGTCCGTCCCTCGATGGTCACTCCATCTACGACAGG
AAAAAACCCCAAGTGCTTGCTCCGCACTACATTCCAAGACCTAGAACCGA
CCCGCATAGAGCAGGCGGTGTCCCCTCGAGAACCAGTCTCTCCCGGAAAG
ATCGTGTTCTCATTTACTTTTTTTTTTTTTATCTCCTAGGAACGTTCTGA
GAAAAGAAAAATTGTGGAGCACAAGAAATTGAATCCACAACCTTACCGCT
CAAGATGTAATATTGTTCCCAGTATGGAGATTGACGTACTGCAGCACTGA
CATACTCCGTTATCAAATGCTCCACTGGTTTTATACGATGGGAAAAACGA
CGCAGTCATTGCGTGTACGTGTGTGTTTGGTTTTTGCGTGCGCGTGTGTG
GGTATGGGTGTGGTTCGGGAATGTTTCTCCGTGCAGGTCTGGAATATGGA
TATCTGGAACGATGCGCCCGTTCCTCATGTTCCTGGATTTCTATGAAGGT
ATTTGATTGTTTTTCGATTTTTTTCGTCTCCAACATTCTGGAACCGCGCC
TCCGATGAATACGAAACACCAAGAGTCGAAATATTTTAAACTCGAAAAAA
CCCCCAAAAAAACAGTTGTCTGATCTGATCTTTTCAGGATGTGTGGGGGA
TGGGATTTAGAATAAAGTGATCAGCCCTGTCTATTGGTGTTGCTATTGTT
AGAAGAAGCAGCCGTGTTGTATGTGATCCGGGGCACAAGAATAAACGTAT
GTTATGTTTTCCGTCTGAACCTTCGAAATATTTCGTTTTGGTCATTCTCC
AGGAGGTGGGAAGGTTAGTTTTGGTTTCGGGGTTGTATACACGTATAGAT
CTGTATATCCATAGCAGTGATGATAAGGGGGGGGGGGGCTTTTAGTGCTG
AGAGATGACGATTCAAACATCAACCATGGTCTTTTTTTCGTATCCTCCAA
CATTTGTTGCGCCAGTCGCGCGTAGAATTGCTGAGCGTTCAAGAATTGAC
AGTGTTCCGGCTGCAGCCTATTTGGTGCATAAGTGCATGCGGAGAAATTC
ATGTGGCACGAGGTATCCTGTGTGCATCTTTGCGCACTGAGAGACAGCCT
GCTTTATTTCGTTTTGTTGACGGACGTTTTCGATGTATTTGCTTACTTAC
TTGTGTACCTCTTTGTGGTCACTCTCGATTTTTTTTTTCCAGGTCAAATG
CGGGAGTTGCTGTATCGCATGAACAATCAGCCGCGACGAGGTGAGGGGGG
ACTGACGGATTTTGCTAATTCTTTCAGCGCGACTTGGTCATGATCATTTG
TGGTTCTTAGTTTATTTTTTATGGTTGAGAGCCTTGCTGTGTGTACTTGG
CCATGATTCATGCGTGTGATAGCCTGGAAGCTTTTTGATTGTATGCCTTC
TGCTGTATAGATCGCAAATTAGCGGCGCTGAATGGGTTACCCTCACCCTC
TTCGGTCACGAGCTGTTGACTACCTAGTTTGTTGGTGCATGACATGAATT
GTATCGGTGGTTATCTCCAATTTTGAATGGTTGATGATTCTGGTATATTT
TCTAATTGTACTTGTGGTGTGTTATATCAAGCTTTCAAAGTCGTAATTCC
ATATTGTACCTTCTTGAATTTATTTGCTAATAGGTCTGTAGAGCTGAATA
TCAAGTGTGAGGTGCATGGCCTCAACATGGGCGCGATGGAGTTATTATAA
TAGGTTCAGTGTTGCAGATATGCTCCCCTCGCACTTTCTATTAGTCTCGT
GCCACATGAATTACGGCATACCAAACATGAGTACACCTCCCTTACTGGTT
ATGATCTAATTATACTAATGAATGTACCAAACTGAACTTTGAGGTCAACG
TGTATAACCCTCGATATGGGTATCTACGTTGAAAACGCTATATATTGGCC
GCTTGTTACAGTCGTGAAAAATCTTCTCCGAAAATAATTCGGGCACTTTT
TTCTGTGAAATTTTCCTGAAGGGGTTCGGTATAGGGTCATTTTCCGGGGA
AAAAGCTCTCCGAGATCGGGGTCCTTTTCCATCGAGGTGCCTTTCCCTCT
CATCTTACGTGGTTTTTTAGACAGTTTCCTGTGAGATCAAAGCTCGCAGG
AAAAGGTGTTTCATCACACGCCTTCCCAATACACAATGAACCCGCTATGG
ATATGACGGATATAGACGATGTGGATACATCATCTGTAGGTGATGGTGAC
GACGAGATCATGGCTGCGGGGCAAGCCATGCTCCACCGAATTCATGTGGC
AAAACTGGGAACAAGCGCGTGCGTAGATGTTATGCAGACGGAAGAGGGGG
CAGCGGGGGATGGTGGGGAGGTGGATGAGATGTTCGTCGATGTTCCACAG
CAGGAGAGGCGAACGTGGAGGGTTAAGCCTAGGGTCAATTACGGTAGTTG
TTGCTGCTGTTGTGGGTGTGGGTGTGTGTGTTTGACTGATCAGGAGGGGC
ATAATTACAGTAGTTATTGTTGCTGCTGCAGTTGTGGGTGAAGATATGGG
TGTGACTGAACGGAAGGGCACGCTGCGAGTGTGGATCCTATTTTCAAAAC
AATTGCAATTGATGACCACTATCGCGCAAGCCAGAGGGACGTACGTGTAT
TGTCACGCCTGCATCTGGGTGTAAAAATCCCCCCCAAAATGAACGACGTA
CTACAAACGGTTTGGAAAACTGTTCTCGTCGAAAGAGCTCTTGGGAAAGA
GTTGACTGCCCCAATTATTTTCAGAGTTTTTTTCAGTACTATAACAAGCG
GTCTTCACATGACCGTTAAAGCCATTGTTCTACTAACTGTGGCAAGTAGG
TTGACTCACGAAGGAGAATTCCGATGGGAAAAAGTACCCCCCCCCCCCCT
ATCGCCGCCGCCACCCACTTCCAACTTGGTCGACGCTAGGGGCTGGGCCA
CCGGTTGTCCTATCGGCGGGAATTGTAGAAGATAGCAATCCCTTTGAGGA
CGCTGTGTTTGGTCTGGACGTTGCACGAGAAGATCCTGTGCCTGCGCCCG
GCTCTCTGTCTCAGGTAGGACAGCAGGCACTCTAGATATATACATTAAAT
GAATCATAAACAACACCGTAAAGCTATATAGTTCCGTGTGTTTCCTTGTG
TTTTATAGGGGGGTGGGGTTCGAAGGGGCAGACAGTGAGTTCGGGTGTCT
TCGTTACCTCGCTTGAAAACATTTGTGAGGATAGAGGCAGGGGAAACTGG
AGATTGTTTTTTCTCCATGTCCTTGTTTCTTGTTCCGGAGTATTGCGGAT
GGTAATCTTTCTCAATTCTGGCACGTGTTGCCGTCTGTGTGTCCATGAAT
AGGATGACTGTCGTGTCTATTTCGAGTCATTGTCCAAAGTTGCGTGGGTT
GTGTCATTTTCCTAGGCAGTATGGGGCGCTCTGAATTGGAAGGTAGAAGC
CCAGTCTGGACAGCAGATGTGTCATGTTTCATGCAGCCTAGGAAGAGGAA
GCCTTATCGTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTAGCTAAACCTT
GTGGGTATCAGAGGCAAGAAAAAACACGAACTTTTGTAAGTCGCCACTGT
TCTCACACGCTCCTCCTTTCGGAGTGGCAGTATCGTATGTCATGTCATGT
TCAGCGGTCTTCAGTCTTCCAAATGAAACGACGATACCACGTGATATCTC
CTCGCTCTACAGAGAACTTAGATCTAATTAGCGTACCCGCAGTCACGGAC
AAACCTCACGACACCAAAGTTACATCACCCTAAGCTTAAGGTGTTCTTGC
ACATGTATGTAGCACACAGTGCAGTCGGACCATCAAGACCGCTGTTAATA
AATATTTGCTAATTGGTGTACTCAACTGAAGTTTCAGGACAGTTTGCGAA
ATGTCAACATGGGTACAATAGAGTCATCACTTGAGCGTTAGAGCTTAGAT
TCCTCCCCCCCCCCGTGGGCTCCTCTTCCAAAATTCCCGGTCCGGAAATC
CCTTCCGCTACCCAACGGATGGAAATCTCTCGCCAATCAGCACACGCATC
TTACGGCATGGACAGCGCCCAGTGGCCAAGTTCGGGTGACTGCAACAGGT
TGCCGGGAGTGCGCACCGTCGGACCAGTATCACCTCGCGGCAGGCTTCGT
GGATCGGTTCGGGAAGAGATCCAAGAAATCCCAGCAGCTTGACCTCAAGG
AGAACCGAGTGATGCATCGTTTGGAGGTAAAGAGGCAAGATAGTACGTAA
AAAGTATGGGGGTTCCATGCTGTTGCTGCGGGGTGATCAGTGATGCATGA
ATGCCCTCAGGTGTGTCCGCTTGTAGTGTTGTCTTTCTTGCTCGTTTTGG
TTCAATTTTTGTTTTGCTTCCTTCGCGCAAGCTTTTTGTGACGCGGTAAC
AGTAGCTATTTACGTGTGTGTCAGCTGGTTACTGTTCCAAGAGTTCGTGG
TGTTGATCAGCACACCTTGAGTGAAGGAGCGGTAAAGGACCAGCTATGCC
CTCGTTCCCAAATCAAAAATCATTATTAGCTGCCTTCGTCACCTTAACGG
ATTTTTGGGGAATCGTAAATAGCTAACCTTCAAACGTTCATTGATGGATG
TAATTCGGACCGCTCCTTTATCCAAGGTATAAAATAGTGCTACTGCTGCT
GCCACCAATAATGAAGACTCAAGAGAGCTGCAAAGATATTGCTCACGGTC
AGTGTCACCGCTTCTCTGACTCGCTCAAACGTCCAGTTTAAGATGCTGAG
ACGATGTGGCCATAGATTGCGGTATCGCATGAGAACTAATGTGTAATCTC
TTCACTCGAACATGAAACATTGACTCAGTCGCCATGAAATTGTTGCGGTA
GAAAGCCTGCAAGTGAATTATTTCGCTCTCTTGCTCTCTTGCTCTATGCC
CCATATCCCATGCACGTGTTTTTAATATTAGTACATTAGCCCGCAGAGCG
ACCCGGTGCCGGCTGGCCGGGCAGCTGATGCAAGCGACGAAGGCCAGAGA
CAGTCCAAACGGCCATTTATCAGAGTTTATGTTGGTACAAAATCCGAGGG
CACCAGAGTTGTCAAATGGAGGGAGGCTTCTGCTCCCCTCGGGGGGTTGC
TG back to topCoding sequence (CDS) from alignment at H-paniculata_contig10278:1453..8104- >mRNA_H-paniculata_contig10278.186.1 ID=mRNA_H-paniculata_contig10278.186.1|Name=mRNA_H-paniculata_contig10278.186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig10278:1453..8104- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGCCCAGAATCTCCTGATCTCTTTGCGTCGACTGGCGCTGGACACCTGTT GTCCATTTGGGAAGCATCGGACACGTTTCAGCCGCTGTGCTGTTATCCTC TGCGGGCCGGACGGTGCGAGGGAGGCAACGTGATATGGGCACCAGGAAGT GCCCAGAATCTCCTGATCTCTTTGCGTCGACTGGCGCTGGACACCTGTTG TCCATTTGGGAAGCATCGGACACGTTTCAGCCGCTGTGCTGTTATCCTCT GCGGGCCGGACGGTGCGAGGGAGGCAACGTGATATGGGCACCAGGAAGGT CTGGAATATGGATATCTGGAACGATGCGCCCGTTCCTCATGTTCCTGGAT TTCTATGAAGGTCTGGAATATGGATATCTGGAACGATGCGCCCGTTCCTC ATGTTCCTGGATTTCTATGAAGGGGCTGGGCCACCGGTTGTCCTATCGGC GGGAATTGTAGAAGATAGCAATCCCTTTGAGGACGCTGTGTTTGGTCTGG ACGTTGCACGAGAAGATCCTGTGCCTGCGCCCGGCTCTCTGTCTCAGGGG CTGGGCCACCGGTTGTCCTATCGGCGGGAATTGTAGAAGATAGCAATCCC TTTGAGGACGCTGTGTTTGGTCTGGACGTTGCACGAGAAGATCCTGTGCC TGCGCCCGGCTCTCTGTCTCAGCACACGCATCTTACGGCATGGACAGCGC CCAGTGGCCAAGTTCGGGTGACTGCAACAGGTTGCCGGGAGTGCGCACCG TCGGACCAGTATCACCTCGCGGCAGGCTTCGTGGATCGGTTCGGGAAGAG ATCCAAGAAATCCCAGCAGCTTGACCTCAAGGAGAACCGAGTGATGCATC GTTTGGAGCACACGCATCTTACGGCATGGACAGCGCCCAGTGGCCAAGTT CGGGTGACTGCAACAGGTTGCCGGGAGTGCGCACCGTCGGACCAGTATCA CCTCGCGGCAGGCTTCGTGGATCGGTTCGGGAAGAGATCCAAGAAATCCC AGCAGCTTGACCTCAAGGAGAACCGAGTGATGCATCGTTTGGAGTACATT AGCCCGCAGAGCGACCCGGTGCCGGCTGGCCGGGCAGCTGATGCAAGCGA CGAAGGCCAGAGACAGTCCAAACGGCCATTTATCAGAGTTTATGTTGGTA CAAAATCCGAGGGCACCAGAGTTGTCAAATGGAGGGAGGCTTCTGCTCCC CTCGGGGGGTTGCTGTACATTAGCCCGCAGAGCGACCCGGTGCCGGCTGG CCGGGCAGCTGATGCAAGCGACGAAGGCCAGAGACAGTCCAAACGGCCAT TTATCAGAGTTTATGTTGGTACAAAATCCGAGGGCACCAGAGTTGTCAAA TGGAGGGAGGCTTCTGCTCCCCTCGGGGGGTTGCTG back to top
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