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Homology
BLAST of mRNA_H-paniculata_contig10272.185.1 vs. uniprot
Match: D8LFW0_ECTSI (SURP motif domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW0_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.150e-45 Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1
Query: 1 MHNHHKYQEQQAKAQATQRMIDAGEMVPGANLTFDTQNEQQQLPGVLRAACTLNPELNGGSLDKVERIVRLWQSNGVFTQKECATLLAAAAAVTLKHATAKAMAAKAARGLRER 342
+++HHK E+QAK QA QRM+ AGEMVPGANLT D QNEQQ +PGVLR+ACTL+PEL GGSLDKVERIVRLW SNGVFT EC +LLAA A VT KHA+AKAMA KAA GLRER
Sbjct: 184 LYHHHKLMEKQAKEQAIQRMVAAGEMVPGANLTLDAQNEQQ-VPGVLRSACTLDPELTGGSLDKVERIVRLWGSNGVFTPAECDSLLAAGAGVTAKHASAKAMAKKAAHGLRER 296
BLAST of mRNA_H-paniculata_contig10272.185.1 vs. uniprot
Match: A0A6H5J830_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J830_9PHAE) HSP 1 Score: 119 bits (297), Expect = 7.690e-29 Identity = 84/208 (40.38%), Postives = 95/208 (45.67%), Query Frame = 1
Query: 1 MHNHHKYQEQQAKAQATQRMIDAGEMVPGANLTFDTQNEQQ----------------------------------------------------------------------------------------------QLPGVLRAACTLNPELNGGSLDKVERIVRLWQSNGVFTQKECATLLAAAAAVTLKHATAKAMAAKAARGLRER 342
+++HHK E+QAK A QRM+ AGEMVPGANL D QNEQQ Q+PG+LR+ACTL+PEL GGSLDKVERIVRLW SNGVFT EC +LLAA A VT KHA+AKAMA KAA GLRER
Sbjct: 109 LYHHHKLMEKQAKELAIQRMVAAGEMVPGANLALDAQNEQQFELLLKQLVGSQDSIQASKDWVVSRLGHYAVNIAWRLRVFAKETEVAAGGEGPKALPRSKACDKVIHVLYLANDVLFSIQHHPAADIFKAECLRQVPGILRSACTLDPELTGGSLDKVERIVRLWGSNGVFTPAECDSLLAAGAGVTAKHASAKAMAKKAANGLRER 316
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 159.8 |
Seed ortholog evalue | 7.3e-37 |
Seed eggNOG ortholog | 2880.D8LFW0 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Suppressor-of-White-APricot splicing regulator |
EggNOG OGs | 2D0I3@1,2SEA2@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 3 |
Model size | 342 |
Cds size | 342 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10272.185.1 >prot_H-paniculata_contig10272.185.1 ID=prot_H-paniculata_contig10272.185.1|Name=mRNA_H-paniculata_contig10272.185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MHNHHKYQEQQAKAQATQRMIDAGEMVPGANLTFDTQNEQQQLPGVLRAA CTLNPELNGGSLDKVERIVRLWQSNGVFTQKECATLLAAAAAVTLKHATA KAMAAKAARGLRER back to topmRNA from alignment at H-paniculata_contig10272:480..8709+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10272.185.1 ID=mRNA_H-paniculata_contig10272.185.1|Name=mRNA_H-paniculata_contig10272.185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8230bp|location=Sequence derived from alignment at H-paniculata_contig10272:480..8709+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCACAACCATCACAAGTACCAAGAGCAACAGGCCAAGGCACAGGCGAC
ACAGAGGATGATCGACGCTGGGGAAATGGTGCCCGGAGCAAATCTAACGT
TCGATACGCAGAACGAACAGCAGGTAGCGTTTTTTGTTGTTGTTTTTTTT
TGCTCCAAGGAGGAAAGAGACAGACAGACAGACAGACAGACAGACAGACA
GACAGACAGGCAGGCAGGCAGGCAGGCATGATATGAAATGTTCTCGCCGA
AGCCGATGTGCACGTAGGGCTAGGTTTAAGGTCTGGGTTAGGTGTAGGGA
TTGCACAAACTCGTGCAATTGATATGTTTCTTTTTATTCGCGTTATTTTT
GCGACCGCTTTCGCGAAGCGGCCTTTGTTTAAACAGTTGATCCGCCCCTT
ACCGTGGGATGACTCTGAAATATTCCAGACGAGGGGTATGGTATGACAGC
GTGGCTATTATTCTGCTCCATTCTACTATGTTATATTCTAGGGGTTCATC
GTAAAATGGGTCTTATTCCGCCGGAAAGGCTCTTTTTTTTTTCTTTTTTT
TTTCTATTTTTTTCAGATTGGATTCTTCGAAAACACACACACACACGCAC
ACAAGAGAGGTAAAAAAAAAAAAAAAAATGATCGGAAGAGACATATTTTT
CTCTTCTCATTTTTTTGGGCGGCACCTCCGGCGGCGGGACTACCTCTTGG
CTAACTCTAAAGGTGCACCGTCCACGACTTGAAATGGGGTTTCTGTCTAT
AGAGCGGGGGCAACAAATCTGCAAACAAATGTACAAAACAAATATCCGAT
ATCCTTCTGAAAGCGGATCCTTCGTTAAATAAAGCGGCTCGAATACCTCC
CCCCCCCTCCCCTACCATGGGATGATTATACTGCCGCCGTGTGCTAAGTG
CATGATTTGTCAGTTACAGTAGGTGACCCCTATATAAGGCAACTGCCCCA
ATAATCAATAGGCAACGGATATATATATATATATACATATAGGGGTACCT
TTTTTGGGGTGCTGTCTACGTATTATGTATATATCTATAGAAAGCTTTTT
CAATCATGAATAGATGGATAAGTGAGGGCTACAAGAAGGTGATGACCATG
TGGCGCGCTACCTTACGCTTGGGGGGGGGGGGGTAATTGAATCATCTTTG
AAGAGAGCCGTGAACAGGTTGAGTGGTACTGGATCAATCACTGACCTTTC
GCGTCGGTTTTTTATTGTCTGATTTTTTCTGACTGCTGACTTCGACGTCT
GATGACGATTTTTTGGGGGTTTTTTAACCCCCGGAAGGCTAAGGCCAAAA
ACCTTTATCCGATGCTTCCATACTTGTGTATTTCTACCGAAGTAGTTCTA
CATTTCCTTTTATGGAATAGAGTTACTTGTTCCTCTGCGGGGTAGGCGCC
ACCCCGGTTCGGCCGAACCAAATAGGCAGTGTGGGGGTTGCACCCACTAA
AAGACCTCTTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTA
CCCGTTCGGGCGTAGGTCCGTGGATGAAAGCCATGTTATGTCTAGGTGTA
GTACACACGTGAGTGATAATATGTGATACTCCTTCGTGAGGTAAAACGTT
GTATCCCATGCCACGCCCCCTTATTAGTCATTTTCTAATTTTTGAATGTA
AGTGAAAACAAGTGCAGATTAAAAATCAGTCAGCTGCATAAGCAGCTCCA
CATGGGTACGACGATGATGGAGTTATATCATAAATAGAAGGCTCAAGCTT
TCTAGTTCAAGTTAAATGTACTATAAATTCTAACAATTTGATTCAGTGAA
CATGGAGGGTTGTTATCTCCATTCCCACCCCATCCACACACACGAAACAC
ACGCACGCGTTTCAGGCGCCACATTCGGCAACGTAGGAAAGAGCGATAAA
GCGTCGGGGAGAGCTCCTTTTGGAACAAGGCTCCGTCCTATCGAGGACGC
GCGACCAATGATCTAACGGTTACGGCATGAAATACCTCTATTAGTGATGT
GTAGCTCCATGTGTAGCTCCAATTTTGCTGATAAGTGTGTATGCAATAGA
AGTTCGAGGTCAGCTGCATAACCCACCCATACCTCTGAACATGCATACAA
TGGAGTATTGATATGAGGTTGAGAGCAATACCTCCCCCCCCCCCCCTCCC
GTCCTTCGCCACTCCCCCGATTCTGGTCATACCAACCAGTTTGAGCTTCT
TTTAAAGCAACTAACAGGCTCTCAGGACTCCATCCAGGCCAGTAAGGAGT
GGGTCGTGTCGCGGCTGGGCCACTATGCCCTGGCCATCGCTTGGCGTCTG
AGGGCGTTCTCGAAGGAGACGGAGGTTGCGGCTGGAGGGGAAGGACCGTT
TGCTCTGCCGCGTTCCAAGGTAAAACGAGTCGGACTACGGTAAGGGGGGA
GGGGGGGGGATAGAGAGGCGTACTCATGTTGTGGATGTCGTCGTTGTTGG
ATTATTTACCACGGGTCCGTCCTCCGCAGGACGGAGCTTTTGCTTGTGCC
AGAGCGATTTTTGATGGCCAAATGGTTTTTCCCCAAGTTGTTGTTGCGAA
TATGTTGCTCAAGAATGTGTTACCTTACGTTGTCTACGTCATTGTAAGGG
GGTGTTGGTTTTTGAATCGATTTATTTGGAAAAAAAAAATTTGGCCACTT
TGTTGCAATATTTATTTTTTTTAGTCTATTTGTTGCAATGTCTTTTGGCC
AATTTGTTAGCAATATTTTTAGACAGTTTGTTGCAATTTGTTTTTAGCCG
ATTTTTTTTTTTTTTTTTTGCAAATTTTGGGCCTATTTGGTTCCAGTGTA
TGTAATGAAACTGACGAAACGGCAGGTCTATGGACTGATCTCGACGAGAT
CTGTCCAGCGATGATACTCCTTCCCATGTTGTCATGATCTAACACCGCCG
TTGTCGATATAAACTTGAGTTTGAAAAAAACAATGTTGAGGTGCGATTAC
AACGTCAATTGCGGTGTTCAAGAATCAGTTCTTAAAATAACAATCTACAA
ATTTGTTAATCGTTTAAAAAGGGATTTTATTGAAGGACAATGAAAATCGC
AATAAATAATTTAATTATATGGGTTAAATCAGGTTCTACGGTACTTTCAA
GCTTGTGAGGCTATTGGAGAAAAGATACCTCGTTTTTGGTACCATAAAAG
ACTTTTTATAGCTGGTAATTCTCCGAAGAATGTGTTTTGTTGAAGTAGGT
AATTCTCCAAAACCACGAGTTTCTTGCGCTTTACCCTTTTCACCGTAATA
TGAGTATAGTAACAAATTCTTCTTTGATTCGTAAAGCTCGTGAAGGTATT
GTAGAATTTATTTAATTTAAAGCCCTTTTTGTTAACTGTCGTCGGATTTT
ACGAAGGCAAGCTGTTTTTTTTTTCGTTTAGCAGCTCTGCAGTCATCGTT
GGGTGAACCAAGTGCCAACTATTATAACGAGCACCATTTTCTGTGCTCTC
TGTGTACTAGCTACTGTCTGTAATGAATTTGTAAAATATATTGTCTGAAC
AGAGATGGCTCCATATATCTGAAGTCATGTCGTACACACACCTCGTAAAC
CTGTTTTTTTACGCGTTGCTTTTTCTTGGAGGGAGTGTATATGTATATAT
GTATATATATATATATATATATTGTTCGACATAATGAGGCGTTTTTTATA
TGCTGGAAAACAGTGGCATTCAAAGACAAGGTGGTTGAGCTGTTGTGGAT
CAGTAAACCGTTGCCTCCATGTGTTCGTGCGTGCGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCTTTGACAACAGGCCTGCGAAAAGGTGATCCACGT
GATGTACTTGGCGAACGACGTGCTGTTCTCGGTGCAGTACCATCCTGCAG
GCGACATCTTCAAGGGGGAGTAAGTGTGTGTTTTTTTAGAATTTACAGTT
TGGTCCCTCCAATACCCAGGATTCAAAAAGGACTGAAAATTAGCCGAACA
CGTGAACATGCGAGAATTTAGGTAGATGAGTAGATGAAAAGTGTTGCATC
CCCCCCGGATAACCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGA
AGTGAGCATGACTGGAAGTCTAGTCAAAGGTCTTTTAGTGGGTGCAACCC
CCACACTGCCTACCTACCTGGTTCAGCCGAACCGGGGTGGCGCCTCCCCC
GCAGAGGAATAAATAACTGTTCTGTTAAAGAAAATGTAGAAATACTTTGA
TAAAAATACTCGAAGTATGGAAGCATCGGATAAAGGTTATTGGCCTCAGC
CTTCCGGGGGTTAAAAAAAAAAAAAAATCCCCCCCCGGAGAAAATCCGAA
TATACTTGGGAAATGGTTTTCACCAAAAGACTGAAACTCTTTCTAAAGAT
AATCGTGTTGTTCTTTTTCATTTATACTTATATTCGAGTTCTTGTTATAT
TCGAGCTTACATTCTTCATTTCTGGGCTAAAAGTAGATTCTTGTCCTGGT
CGGTTAAATAATTTTTTAAATTATTTTTCAAAGCATGTGTTCTGAGATGT
TGATTGCTGGACGTGACAGTCGTTTGTCTAATGTGACGGTTCCATCCCCA
ATCCCCGGGTTTATGTAAGGTAGCCTCAGTTTGAGCTGGGAGCAGGAAGC
ATGGACCGTGTGACTATCCTACCAACTGACAGACTTGTATCGACCCAGGG
CTTTTCCTGTCGTACAGCAATATACAGCTAATACAAGAGACCAGACCATT
GCCAAGGACTACTTCTACCATCCCCAGCCGTACCGCTCTGAGAGTATTGT
ACAGCATAGTCAGTAAGAGGAAACAATAATCTACGTGCGTGAGAAACTCC
GCTATACGCACAGCAGTTATCATCACACATGATGGTGTTTTTTTATGGTC
AGTATAATGAGATAAATTTGTTGAGTATAATCATCGGGAGGGGTTATGCC
TATTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAAAGGAGTAGCTT
TAGAGGAGTAGCTTTAGAGGAATATAGGACTCGGATTAGTCAAAGATAAG
AGAGAAAAAATCTTGAAATTTTATTTTTTATTGGTTTAAATTTTATAATT
GTATAAATATATTTTATTATTGAACGTCGTCGAGTGTTCTGCGCCCCGGA
CCATTCACGACTGCTAATGATATACTCGTAAATCGAATGGATAGGGATGG
GTGCTTTATTATAATATGTGTGTGTCCGCTCCAATTCTCTCTGAAACTCA
GGCGAATACTGTCAGTTTTTTTTTTTTTTTTTTGTGAAAACCATATGCAA
GTATATTCGTATTTGTCCCGGGGGATGCAACATTTTTCAGCCACATTTGG
CAACAATTTAGAAAGAGCGATTGATGGGCCATCGGAAATCGCTCTAATAG
GAACATAGCTCCGTCCTCCCCTATATCTGCAAGAATGGAAATATTGAGAA
TTGCAGCCTCGATTTTTTTTTTGCTGATTTTTTAACGAAATTTCCATGGT
TTAGGAAATGGTTCTAAAAATGCCGCCTTCGTACTGAACTGAATTCCCTA
TAATATTGGTAATCGATGAATACGGTATTATCATTATTATTATCATTATT
ATTATCATTAGCGAGAACACAATGCTCTCGGGAGACTGACTCTCGGGGAG
ACACCGCTAGCTCTATGCGGGTCGGTCCTAGGTCTTGGGGTGTAATGCGG
AGCAAGCACTTGGGTTCTGTTCTGTCGTAGATAGACTGCCCATCCAGGGT
CGGACACAGCTAGAAAGCTGTTCCGAGAAAGAGACGAAATACCATTGGTT
GCTGTGTAGGGGGTCGGGGTTCAGGAATCCCAGGAACTTCAGGAACGTGC
TCTCCACATTAGGCTATTTTGTTGTTGGGGTTATAGACCTCTTGTAACTC
GGGGAGTTTATTGGAGAGTATGTCCCCGCCCCCCCCCCAAAGTGAGACTA
CGGCGGCGCAAAACGTGCTAAATGTTGCTTCAACCACACTGCCTACCTGG
TTCTTAGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGAAACTTTGTTCT
GTTAAAGGAAATGTAGACATGTTTGGGCGAATGCCTGGACGTGGAAGCAG
CGGAAAAGGTTTTTACCTCAACCTTCCGGGGACTAAAAAAAAAAAAAAAG
ATGTTGCTTCAATAGGAATGGGGTTGGTCGGATATTGGTTGCATGTGTGT
GTGTGTGTATGTAGAGACATCTTATGCGTCCATCTTTTCTTTTGGTTCAT
CTCTGAAGAAAGAAAATGTGCAACTGGTTCAAAGTGGCTAGCACCGGCGA
CGACGGAACCTCGCAGCTTGGGAGCTGCAAGAAGTAGATGGACGAGATGT
ACTCTACAAGCGTATGTATAGGACCAATTTCCCACCAATTCCGATCGTTT
TGGATCAAAACATGTCGGCGAGTTGCGCACCCCCGAAGTCCTAATTTGGA
GGGAGGAAAAAAAAAATTCGATAAAATTCCCTGGTGTTTTTTGTGATTTT
TTTTATTATTATTATTATTATTATTTTAAATATACTTTTAAAAATCATTT
TTTTGCGAATTACGCCACACATGCATTGAAAATATAATGAGGTCCTGACA
AATATAAGCATCGTTGCTGCTGGCCTTCGCAACAACGGAACAGGTGCCTG
AAGCAGCTGCCGGGCGTGCTGCGCGCGGCTTGTACCCTTAATCCGGAGCT
CAATGGGGGCAGCTTAGATAAGGTATAGGCTTCAGAGCGGATTTTTTTTT
TGTTTTCTTGACAGGTTTGTAAGTAGCTTCTATTTCATCTTGTCGTGTTT
ACGGGAGATTTATTTATGCCGCAGTTGCAGGGAGGTTCGTTCTTGAATTG
CGTACGTCAACTGTGCTTCTTTCTGCCTCAGTATTTGCTGCCTTCAAGGA
GTACCACAATGGTCCGATATATACTGTAACACCTTATGATATTTCACCCC
CCCCCCCGATCTTATTTTACAACATCCATTTTTCTCGAGAAGCAAGAGCC
TGCTTGCCCTGCCGAAACAGCAAGTGTATCGAATGATCTCAATGTAGGCT
TTTCCTCCATGTGAAACGTCATATTTGCCATATATTGTTCTTTTTGGTAA
TATATATATATATATATATATATATATATATATATGTATGACACTTTTTA
TTCAAATGCCGCATGATCGCACGAAAACAAAACGGTCATATCAGTGTCTT
TAAAAGTCGTGTTCCATTTGTTGGATAATGACTATCATAACTGAAAACAT
TGTTGGATAACGACAGTGGCCAAGGTAACCTACTTTCGAACTGTACTGTG
TACATCCTATCCGCAGCAGCGGCAATATAATATCCTCCGTGCCGTGGCAT
CATCAGCGCAGGAGCAATTAGCGATTTCGAAAAGTTCGTAAGCTCGCTGT
TCTGACTAGAATTGTGCATAATTCAGCATGAAAATAGTGTCACATATAGA
GCTCCATATATTCCCCCGTTTATTATCCTAAATGTGTCATAACTCAAAGT
TTTTGTGCCACGTGAAGACCCCAAAAAAAACTGTTCTGTAAAACGCGGTT
TTTCAATCATTCTGTGGACTCAAGGCCTATTTCAAACGAGATGTTTCATG
ACAATATCGCTATCGGTGGTCATGATCTACTGCAGCACCGTCGTTGTCGA
GAAACCCCACTTTTGAAAATTTCTATCGAAGGGTGCGATTTCGAAGGGCC
TTCTTAGGGGAAGTGTACATAGCCAATGACCCGCTATATATTTGAAAAGA
TTGATAGATATAGATGTAATTGGCTCTTTGGGTATCTCTTGTTCATGTTC
CATAGTTGCCTTCGTTAGGTATTTGGTCAAATGATGTAAATGATTATACA
ATTGAATCATTTTGTTATGCACTATAATAGGTAATAGTATTATATTTTAT
TTGAGCAAAAGAATCTATTTTTCATTTATTTCATTAATGGCTTACTCATT
TACTAATCAATTTAATCGAATAATAATAATAATATTAATAATAATAATAT
AGAAGTTCTCTTTGTTAATCTTTTACCAAATTCGCTTTTTTTTGTTTGTC
TTGTTTTTGTAATCAAATACTTAGCTTTTAATTAAATAATATAGCAGCTC
TCCTTTTTTTTTTTTTTTTTTTATTATTAGGTGGAACGGATCGTGAGGCT
CTGGCAATCCAACGGCGTCTTCACTCAAAAGGAATGTGCCACCCTGCTAG
CAGCCGCCGCCGCTGTGACGCTGAAGCATGCTACAGCTAAGGCCATGGCC
GCTAAGGCGGCGCGGGGGCTGCGAGAGCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig10272:480..8709+ >mRNA_H-paniculata_contig10272.185.1 ID=mRNA_H-paniculata_contig10272.185.1|Name=mRNA_H-paniculata_contig10272.185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig10272:480..8709+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCACAACCATCACAAGTACCAAGAGCAACAGGCCAAGGCACAGGCGAC ACAGAGGATGATCGACGCTGGGGAAATGGTGCCCGGAGCAAATCTAACGT TCGATACGCAGAACGAACAGCAGATGCACAACCATCACAAGTACCAAGAG CAACAGGCCAAGGCACAGGCGACACAGAGGATGATCGACGCTGGGGAAAT GGTGCCCGGAGCAAATCTAACGTTCGATACGCAGAACGAACAGCAGCAGC TGCCGGGCGTGCTGCGCGCGGCTTGTACCCTTAATCCGGAGCTCAATGGG GGCAGCTTAGATAAGCAGCTGCCGGGCGTGCTGCGCGCGGCTTGTACCCT TAATCCGGAGCTCAATGGGGGCAGCTTAGATAAGGTGGAACGGATCGTGA GGCTCTGGCAATCCAACGGCGTCTTCACTCAAAAGGAATGTGCCACCCTG CTAGCAGCCGCCGCCGCTGTGACGCTGAAGCATGCTACAGCTAAGGCCAT GGCCGCTAAGGCGGCGCGGGGGCTGCGAGAGCGCGTGGAACGGATCGTGA GGCTCTGGCAATCCAACGGCGTCTTCACTCAAAAGGAATGTGCCACCCTG CTAGCAGCCGCCGCCGCTGTGACGCTGAAGCATGCTACAGCTAAGGCCAT GGCCGCTAAGGCGGCGCGGGGGCTGCGAGAGCGC back to top
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