mRNA_H-paniculata_contig10268.182.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 375 bits (963), Expect = 2.040e-114 Identity = 185/331 (55.89%), Postives = 224/331 (67.67%), Query Frame = 3
Query: 549 VCDDGTPGVQSTSFDVCCSVECSTCGGPQCGQQNTTN-GAFDCCVTEIMESNLFCTDTGVSPCILQATSAANDSMCDNGLVGVQDPDSDVCCPLECGNECGGAGCGVIVGTDPSQCCSELIMASGQDCAVTGSPPCFDQSVATEN-TTCSNGFAGYEDTLKGVCCDAACGMCGGVGCGDLPGLTGAECCSAVIEVSGSLCDEVGEAPCILAPPSYTPSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATILMSGVMCDQGVEAPCIMVNGTYTDAPAAAPINPILGVP----------ATPSPSVGSRAIEFSVAPT 1505
VC +G G+QSTS DVCC C CGG C NT++ + DCC TEI+ES FC + +PCI+ +AANDS+C+NG GV DPD+DVCCPLECG+ CGG GCG I G + +QCCS LI+ SG C+ T S PC + +N TTCSNG G ED + +CCDAACG+CGG GCG++ GLTG +CCS I V LC EAPC++ PP + S CPNGLAGVQD +VCCAE CNG CGGEGCG+I+GTNG DCCS TIL +GV C++GV APCIM+NGTYTDAP AAP P P AT +P G+R F+ APT
Sbjct: 29 VCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAPGAVAATEAPVAGTREFRFTQAPT 359
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 346 bits (888), Expect = 1.650e-104 Identity = 218/466 (46.78%), Postives = 268/466 (57.51%), Query Frame = 3
Query: 474 MGRMNVVAFFALVAVAEFAAPAV-AQVCDDGTPGVQSTSFDVCCSVECSTCGGPQCGQQNTTN-GAFDCCVTEIMESNLFCTDTGVSPCILQATSAANDSMCDNGLVGVQDPDSDVCCPLECGNECGGAGCGVIVGTDPSQCCSELIMASGQDCAVTGSPPCFDQSVATENTTCSNGFAGYEDTLKGVCCDAACGMCGGVGCGDLPGLTGAECCSAVIEVSGSLCDEVGEAPCILAPPSYTPSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATILMSGVMCDQGVEAPCIMVNGTYTDAPAAAP-INPILGVPATPSPSVGSRAIEFSVAPTAVDMIGSSVAPTATPTAGDRAILMPTDVPTAAPTDGMLSSMETSXXXS------GSRDGNFGSVSPTTTGTPIPSELTDDINDFTAPP-ASTSGAPRASTGSLVTLAAIAGGIFAVNAA 1841
M +MN F AL+ V A +V AQ C G GV+STS DVCC++EC TCGG C NT++ A DCC TEI ES + C+DTGV+PCIL +A+ DS+CDNG GVQDPD+DVCCPLECG CGG GCG I G D SQCC+ +I SG C PC +VA ++ CSNGF G E+ VCCD AC +CGG CG++ GLTGA+CC+ I + LC E G APC++ PP T S C NGLAGV +VCCAE CNG TNG DCCSATIL + + C APC+MV GT+T APA P + P P +V ++APT TA PT G R + T VPT APT + M + XXX G T PS L D + TAPP A+T+G+ S GS+V++AA+AGG+FAV AA
Sbjct: 1 MNKMN---FAALLGVVLALAGSVGAQTCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVD--TAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETV-------TMAPTPTSQ-------TAAPTPGSRDLDFGTGVPTPAPTSVEEAGMSSXXXXXXXXXXIGESMAXXXXXXXXXXXTAGPSALGDTMAPSTAPPGAATAGSAALSAGSVVSVAAMAGGMFAVLAA 447
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.280e-45 Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 3
Query: 549 VCDDGTPGVQSTSFDVCCSVECSTCGGPQCGQQNTTN-GAFDCCVTEIMESNLFCTDTGVSPCILQATSAANDSMCDNGLVGVQDPDSDVCCPLECGNECGGAGCGVIVGTDPSQCCSELIMASGQDCAVTGSPPCFDQSVATEN-TTCSNGFAGYEDTLK 1025
VC +G G+QSTS D CC EC CGG C NT++ + DCC TEI+ES C + +PCI+ +A+NDS+C+NG GVQDPD+DVCCPL CG+ CGG GCG + G D +QCCS LI+ SG C+ T S PC + +N TTCSNG G ED +
Sbjct: 29 VCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVN 189
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 145 bits (365), Expect = 7.210e-35 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 3
Query: 1176 PPSYTPSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATILMSGVMCDQGVEAPCIMVNGTYTDAPAAAPINPILGVPATP----------SPSVGSRAIEFSVAPT 1505
PP + S CPNG+AGVQD +VCCAE CNG CGGEGCG+I+GTNG DCCS+TIL +GV CD GV APCIM+NGTYTDAP AAP P + P T +P G+R +F+ APT
Sbjct: 3 PPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVATTEAPLAGTREFQFTQAPT 122
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: A0A0G4EQ49_VITBC (GH10 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQ49_VITBC) HSP 1 Score: 87.8 bits (216), Expect = 9.170e-14 Identity = 78/268 (29.10%), Postives = 110/268 (41.04%), Query Frame = 3
Query: 546 QVCDDGTPGVQSTSFDVCCSVECSTCGGPQCGQQNTTNGAFD-CCVTEIMESNL--FCTDTGVSPC-----------------ILQATSAA------------NDSMCDNGLVGVQDPDSDVCCPLECGNECGGAGCGVIVGTDPSQCCSELIMASGQDCAVTGSPPCFDQSVATENTTCSNGFAGYEDTLKGVCCDAACGMCGGVGCGDLPGLTGAE-CCSAVIEVSGSL--CDEVGEAPCILAPPSYT---------PSMCPNGLA 1217
+VC++ GV T VCC EC TCGG C + +G D CC EI + + +C+ T +PC +L T+AA N ++C+ L+G +PD CCPL CG++CGG +G+ CC G C PC + T+ C + G CC CG C GC D G GAE CC + I + C+ APC+ Y+ PS+ P+ +A
Sbjct: 268 RVCEEFLGGVFHTRRGVCCPRECGTCGGEGCALR--ADGRPDLCCSKEIKQRGVDGYCSMTYAAPCTVDDSMVAQLERGESVRVLGTTAAAVSSNVPQKAQLSNQALCEEELMGKFNPDKQACCPLSCGDDCGGND--ACMGSQKDICCPMEFENYGPKCETNAPLPCLFE--LTKEQYCKHVAYGSYHAATNACCMRMCGSCEDDGCEDRDG--GAENCCPSQIAANPETPTCELPAWAPCMSRERDYSGGGDGGGGVPSLGPSDIA 527
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 8.260e-13 Identity = 52/101 (51.49%), Postives = 57/101 (56.44%), Query Frame = 3
Query: 1191 PSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATIL--MSGVMCDQGVEAPCIMVNGTYTDAPAAAPINPILGVPATP-SPSVGSRAI 1484
PS C NG+ GV D VCC E C GQCGGEGCGAI GTNG SDCC TI GV C EAPC+M T + P+NP A P +PS S I
Sbjct: 289 PSTCSNGIPGVSDGDVCCLEAC-GQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCG---EAPCVMAGFTPS------PLNPAFDGTAAPVAPSTCSNGI 379
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 2.850e-11 Identity = 77/291 (26.46%), Postives = 110/291 (37.80%), Query Frame = 3
Query: 552 CDDGTPGVQSTSFDVCCSVECSTCGGPQCGQQNTTNGAFDCCVTEIMESNLFC-TDTGVSPCILQATSAANDSMCDNGLVGVQDPDSDVCCPLECGNECGGAGCGVIVGTDPSQCCSELIMASGQDCAVTGSPPCFDQSVATENTTCSNGFAGYEDTLKGVCCDAACGMCGGVGCGDLPGLTGAECCSAVIEVSGSLCDEVGEAPCILAPPSYTPSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATILMSGVMCDQGV-EAPCIMVNGTYTDAPAA 1418
C G G+ S++ +VCC C CGG C T+G DCCV +I++S++ C D GV+PCI+ S ++ P A GQ +A +T+ ++L AA + +GS +AP + S C NG G Q + CC+E C GQCGG GCG + G + CC I+ +G++C V EAPCI++N YT AP A
Sbjct: 7 CVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSA------------TEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXX------XXXXIAPSSTS-------PTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTP--------VAPVAGASSYCENGYPGWQSNEACCSEFC-GQCGGSGCGEL----GSATCCYDNIISAGLVCGVDVLEAPCIIIN--YTPAPLA 257
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Match: R1B752_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B752_EMIHU) HSP 1 Score: 63.5 bits (153), Expect = 2.350e-6 Identity = 54/183 (29.51%), Postives = 66/183 (36.07%), Query Frame = 3
Query: 1002 AGYEDTLKGVCCDAACGMCGGVGCGDLPGLTGAECCSAVIEVSGSLCDEVGEAPCIL-------------APPSYT-------------------------------PSMCPNGLAGVQDDTVCCAETCNGQCGGEGCGAILGTNGPSDCCSATILMSGVMCDQGVEAPCIMVNGTYTDAPAA 1418
AG VCC+A CG+CGG+GC PG C A++ S S C + CIL APP T P +C G+ VCC TC G CGG GC + G GP CC IL C + CI+ G +A A
Sbjct: 367 AGVLHASGQVCCNATCGLCGGLGCSSRPGGPHQCCMPAILRKSRS-CQSTADVACILHRGAAANATTAERAPPELTRSRLMTRRXXXXXXPAMLFSPSAEADRIVILPRLCSAGVLHASGQ-VCCNATC-GLCGGLGCSSRPG--GPHQCCMPAILRKSRSCQSTADVACILHRGAAANATTA 544 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10268.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10268.182.1 >prot_H-paniculata_contig10268.182.1 ID=prot_H-paniculata_contig10268.182.1|Name=mRNA_H-paniculata_contig10268.182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=504bp MAADGDESAENLDLVLHFLPPFSCVYVLHHKQSPRVLPTQLLDTMMGRMNback to top mRNA from alignment at H-paniculata_contig10268:481..6092- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10268.182.1 ID=mRNA_H-paniculata_contig10268.182.1|Name=mRNA_H-paniculata_contig10268.182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5612bp|location=Sequence derived from alignment at H-paniculata_contig10268:481..6092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10268:481..6092- >mRNA_H-paniculata_contig10268.182.1 ID=mRNA_H-paniculata_contig10268.182.1|Name=mRNA_H-paniculata_contig10268.182.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3024bp|location=Sequence derived from alignment at H-paniculata_contig10268:481..6092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |