mRNA_H-paniculata_contig10266.181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10266.181.1
Unique NamemRNA_H-paniculata_contig10266.181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10266.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10266contigH-paniculata_contig10266:3415..3783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10266.181.1prot_H-paniculata_contig10266.181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10266 3415..3712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.782385-CDS-H-paniculata_contig10266:3414..35931622928730.782385-CDS-H-paniculata_contig10266:3414..3593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10266 3415..3593 +
1691480597.973748-CDS-H-paniculata_contig10266:3414..35931691480597.973748-CDS-H-paniculata_contig10266:3414..3593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10266 3415..3593 +
1622928730.8007977-CDS-H-paniculata_contig10266:3696..37121622928730.8007977-CDS-H-paniculata_contig10266:3696..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10266 3697..3712 +
1691480597.9837198-CDS-H-paniculata_contig10266:3696..37121691480597.9837198-CDS-H-paniculata_contig10266:3696..3712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10266 3697..3712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.8152304-UTR-H-paniculata_contig10266:3712..37831622928730.8152304-UTR-H-paniculata_contig10266:3712..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10266 3713..3783 +
1691480597.9929557-UTR-H-paniculata_contig10266:3712..37831691480597.9929557-UTR-H-paniculata_contig10266:3712..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10266 3713..3783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10266.181.1

>prot_H-paniculata_contig10266.181.1 ID=prot_H-paniculata_contig10266.181.1|Name=mRNA_H-paniculata_contig10266.181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MEAEETNPRLPPCYFPVQCPGVTSQRHLSVLPPEKYENFVFSRTGTSWPA
FIAVTDIATNLEYR*
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mRNA from alignment at H-paniculata_contig10266:3415..3783+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10266.181.1 ID=mRNA_H-paniculata_contig10266.181.1|Name=mRNA_H-paniculata_contig10266.181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig10266:3415..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGGAAGAAACAAACCCCCGCTTACCCCCCTGCTACTTCCCGGT
ACAATGTCCCGGTGTTACCTCCCAGCGCCACCTCTCTGTGCTACCTCCAG
AAAAGTATGAGAACTTTGTTTTCAGTCGAACCGGCACGAGCTGGCCCGCT
TTTATTGCTGTGACCGACATTGCTACAAAGTCTAGAATAATAATCGTTCC
GTGGGCTTAAGCTCGTTCCCTCACAACGCTGCCGAGTCGTGAAGGTGATT
CTTTACGCTCTGGGGTGGAAAGGTAAAGGAAGTCTAGAATATAGATAATC
GATACTTGTACTTCTAACAGCTTCTACTGCTGTGATGTCTGCAGCAATAC
CGTGCTACTGAGCACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig10266:3415..3783+

>mRNA_H-paniculata_contig10266.181.1 ID=mRNA_H-paniculata_contig10266.181.1|Name=mRNA_H-paniculata_contig10266.181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig10266:3415..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGGAAGAAACAAACCCCCGCTTACCCCCCTGCTACTTCCCGGT
ACAATGTCCCGGTGTTACCTCCCAGCGCCACCTCTCTGTGCTACCTCCAG
AAAAGTATGAGAACTTTGTTTTCAGTCGAACCGGCACGAGCTGGCCCGCT
TTTATTGCTGTGACCGACATTGCTACAAAATGGAAGCGGAAGAAACAAAC
CCCCGCTTACCCCCCTGCTACTTCCCGGTACAATGTCCCGGTGTTACCTC
CCAGCGCCACCTCTCTGTGCTACCTCCAGAAAAGTATGAGAACTTTGTTT
TCAGTCGAACCGGCACGAGCTGGCCCGCTTTTATTGCTGTGACCGACATT
GCTACAAATCTAGAATATAGATAATCTAGAATATAGATAA
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