mRNA_H-paniculata_contig10265.180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10265.180.1
Unique NamemRNA_H-paniculata_contig10265.180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10265.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10265contigH-paniculata_contig10265:3421..4065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_003710.1
Exons1
Model size646
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.7186015-UTR-H-paniculata_contig10265:3420..37981622928730.7186015-UTR-H-paniculata_contig10265:3420..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10265 3421..3798 +
1691480597.9534233-UTR-H-paniculata_contig10265:3420..37981691480597.9534233-UTR-H-paniculata_contig10265:3420..3798Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10265 3421..3798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.730519-CDS-H-paniculata_contig10265:3798..40651622928730.730519-CDS-H-paniculata_contig10265:3798..4065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10265 3799..4065 +
1691480597.9642735-CDS-H-paniculata_contig10265:3798..40651691480597.9642735-CDS-H-paniculata_contig10265:3798..4065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10265 3799..4065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10265.180.1prot_H-paniculata_contig10265.180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10265 3799..4065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10265.180.1

>prot_H-paniculata_contig10265.180.1 ID=prot_H-paniculata_contig10265.180.1|Name=mRNA_H-paniculata_contig10265.180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MAEQQNLGPVDRLLLLVADGQSLSRRVLGNERQSARLGERLSCLKHPLWQ
LQARVQTQAETPPDFIHTLAEEVSHCLEVLLELTHPDWW
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mRNA from alignment at H-paniculata_contig10265:3421..4065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10265.180.1 ID=mRNA_H-paniculata_contig10265.180.1|Name=mRNA_H-paniculata_contig10265.180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at H-paniculata_contig10265:3421..4065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAATAGCATAGCACATGCAACGAGAGTGAAACGGAACCACCATCAGT
CCACGTCGCAGCAGGGTACGCAGGGAGGACCCCCAGAAGCAAATGCAGGG
TAGACCTCCTACTACATGGTAGTACTTCGCTCCCCCCACTGCTGAACGGA
GGAACGGCATTCATTCACTCGCATCCAAGAAGCATCATGCAGTTTCTTTG
CATTCAATTCTGATACATAAATTGTGGATTGTTGGTGTTTGAATCAGACG
AGGTGGTCATCGGTCATCTCCTGAAAGAGCGAATTAAATAGGACCAGGAG
CACCACCACCACCATCAGCAGCAGTCAGTACCAAGTAGCGACACTGTATC
GCTATCTTTTGTTGACATTCCAATCGCCATGGCGGAGCAGCAAAACTTGG
GGCCCGTGGATAGGCTGCTGCTGTTGGTCGCAGATGGCCAATCGCTGTCG
AGACGGGTGCTTGGGAACGAGCGCCAGAGCGCTCGTTTGGGAGAGCGCCT
ATCGTGCCTCAAGCATCCGCTGTGGCAACTGCAGGCGCGCGTGCAGACCC
AGGCGGAGACACCGCCCGACTTCATCCACACCCTTGCAGAGGAGGTGTCA
CATTGCCTAGAGGTATTGCTGGAGCTTACACACCCGGATTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10265:3421..4065+

>mRNA_H-paniculata_contig10265.180.1 ID=mRNA_H-paniculata_contig10265.180.1|Name=mRNA_H-paniculata_contig10265.180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig10265:3421..4065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAGCAGCAAAACTTGGGGCCCGTGGATAGGCTGCTGCTGTTGGT
CGCAGATGGCCAATCGCTGTCGAGACGGGTGCTTGGGAACGAGCGCCAGA
GCGCTCGTTTGGGAGAGCGCCTATCGTGCCTCAAGCATCCGCTGTGGCAA
CTGCAGGCGCGCGTGCAGACCCAGGCGGAGACACCGCCCGACTTCATCCA
CACCCTTGCAGAGGAGGTGTCACATTGCCTAGAGGTATTGCTGGAGCTTA
CACACCCGGATTGGTGGATGGCGGAGCAGCAAAACTTGGGGCCCGTGGAT
AGGCTGCTGCTGTTGGTCGCAGATGGCCAATCGCTGTCGAGACGGGTGCT
TGGGAACGAGCGCCAGAGCGCTCGTTTGGGAGAGCGCCTATCGTGCCTCA
AGCATCCGCTGTGGCAACTGCAGGCGCGCGTGCAGACCCAGGCGGAGACA
CCGCCCGACTTCATCCACACCCTTGCAGAGGAGGTGTCACATTGCCTAGA
GGTATTGCTGGAGCTTACACACCCGGATTGGTGG
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