mRNA_H-paniculata_contig10265.179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10265.179.1
Unique NamemRNA_H-paniculata_contig10265.179.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A830HAU6_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HAU6_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 3.920e-14
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            PEDP ++RTFRGH   VT+L ++P+MKQL+S SND CLM+W+F+ QLR  R
Sbjct:    8 PEDPSLERTFRGHKNAVTSLVFNPNMKQLISGSNDNCLMVWNFKPQLRAYR 58
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.420e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            P DPE++RTFRG    VT +SYSPDMKQLVSS+ D  LM+W+FRAQLR  R
Sbjct:   43 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLRALR 93
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A7S2VWJ8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWJ8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.260e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    7 DPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLR 144
            DP ++RTFRGH  +V ++++SP+MKQLVS S D CLMLWSF+ QLR
Sbjct:   10 DPTLERTFRGHKSSVLSVAFSPNMKQLVSGSEDNCLMLWSFKPQLR 55
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: C1MRX9_MICPC (Entriole proteome WD40 repeat-containing protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MRX9_MICPC)

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 EDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            EDP ++RTFRGH   VT  +++P+MKQL++SSND  LM+W+F+ Q+R  R
Sbjct:   15 EDPTLERTFRGHKDAVTCCAFNPNMKQLITSSNDNSLMIWNFKPQMRAYR 64
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: UPI000C6CA2D0 (POC1 centriolar protein homolog A-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CA2D0)

HSP 1 Score: 64.7 bits (156), Expect = 7.240e-11
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    7 DPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            DP ++R F+GH G++TA+ ++P+MKQLVSSS D C+M+W F+ Q+R  R
Sbjct:    7 DPTLERYFKGHKGSITAVDFNPNMKQLVSSSMDNCIMVWHFKQQMRAYR 55
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A2G8LCQ3_STIJA (Putative POC1 centriolar protein-like A isoform X2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LCQ3_STIJA)

HSP 1 Score: 64.7 bits (156), Expect = 7.260e-11
Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLR 144
            PEDP ++R ++GH  TVT++ ++P+MKQL S   D CLM+W+F+AQ+R
Sbjct:   41 PEDPTLERNYKGHRDTVTSVDFNPNMKQLASGGMDSCLMVWNFKAQMR 88
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A7S1KSV3_9EUKA (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KSV3_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 2.550e-10
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 EDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            EDP+V+RTFRGH   +T++S+SPD+K+L S++ D  LMLW+F+  LR  R
Sbjct:    5 EDPQVERTFRGHHQPITSVSFSPDLKRLASTAMDSALMLWNFKPSLRAYR 54
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BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: L1J966_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J966_GUITC)

HSP 1 Score: 62.8 bits (151), Expect = 2.810e-10
Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    4 EDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLR 144
            EDP ++R+FRGH   + ++ ++P+MKQL+S S D CLM+W+F+ QLR
Sbjct:    4 EDPTLERSFRGHKDAINSVVFNPNMKQLISGSQDSCLMIWNFKPQLR 50
[Close]
BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A699YXE3_HAELA (WD_REPEATS_REGION domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YXE3_HAELA)

HSP 1 Score: 61.2 bits (147), Expect = 3.820e-10
Identity = 25/51 (49.02%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVRR 153
            P+DP ++R+FRGH   VT++ ++ +MKQL+S S D C+M+W+F+ QLR  R
Sbjct:    3 PDDPTLERSFRGHKDAVTSVCFNNNMKQLISGSLDGCVMIWNFKPQLRAYR 53
[Close]
BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Match: A0A5J4XNY1_9CHLO (POC1 centriolar protein A (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XNY1_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLR 144
            PEDP ++R+FRGH   VT+++++ +MKQL+S S D C+M+W+F+ QLR
Sbjct:   11 PEDPTLERSFRGHKDAVTSVAFNHNMKQLISGSLDGCVMVWNFKPQLR 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10265.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A830HAU6_9CHLO3.920e-1460.78Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
D8LSH2_ECTSI1.420e-1366.67Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A7S2VWJ8_9STRA4.260e-1263.04Hypothetical protein (Fragment) n=2 Tax=Triparma p... [more]
C1MRX9_MICPC3.900e-1154.00Entriole proteome WD40 repeat-containing protein n... [more]
UPI000C6CA2D07.240e-1153.06POC1 centriolar protein homolog A-like n=1 Tax=Cen... [more]
A0A2G8LCQ3_STIJA7.260e-1152.08Putative POC1 centriolar protein-like A isoform X2... [more]
A0A7S1KSV3_9EUKA2.550e-1054.00Guanine nucleotide-binding protein subunit beta-li... [more]
L1J966_GUITC2.810e-1051.06Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A699YXE3_HAELA3.820e-1049.02WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]
A0A5J4XNY1_9CHLO4.760e-1052.08POC1 centriolar protein A (Fragment) n=1 Tax=Trebo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10265contigH-paniculata_contig10265:300..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D8LSH2
Preferred namePOC1A
KEGG koko:K16482
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003416,GO:0003417,GO:0003418,GO:0003431,GO:0003433,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0035265,GO:0036064,GO:0040007,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045787,GO:0046605,GO:0046607,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051216,GO:0051493,GO:0051495,GO:0051704,GO:0051726,GO:0060271,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0061448,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0090068,GO:0098868,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902850,GO:1903047,GO:1905515
EggNOG free text desc.growth plate cartilage chondrocyte development
EggNOG OGs2CMZ3@1,2QSVJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.6790574-CDS-H-paniculata_contig10265:299..4521622928730.6790574-CDS-H-paniculata_contig10265:299..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10265 300..452 -
1691480597.941651-CDS-H-paniculata_contig10265:299..4521691480597.941651-CDS-H-paniculata_contig10265:299..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10265 300..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10265.179.1prot_H-paniculata_contig10265.179.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10265 300..452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10265.179.1

>prot_H-paniculata_contig10265.179.1 ID=prot_H-paniculata_contig10265.179.1|Name=mRNA_H-paniculata_contig10265.179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
PEDPEVDRTFRGHSGTVTALSYSPDMKQLVSSSNDRCLMLWSFRAQLRVR
R
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mRNA from alignment at H-paniculata_contig10265:300..452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10265.179.1 ID=mRNA_H-paniculata_contig10265.179.1|Name=mRNA_H-paniculata_contig10265.179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig10265:300..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGAAGACCCTGAGGTAGACCGGACGTTTCGCGGGCACAGCGGGACGGT
GACGGCGCTGTCCTACTCTCCTGACATGAAGCAACTCGTTTCATCTTCCA
ATGATCGGTGCCTCATGCTCTGGAGCTTCCGCGCTCAGCTGAGGGTGAGA
AGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10265:300..452-

>mRNA_H-paniculata_contig10265.179.1 ID=mRNA_H-paniculata_contig10265.179.1|Name=mRNA_H-paniculata_contig10265.179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig10265:300..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGAAGACCCTGAGGTAGACCGGACGTTTCGCGGGCACAGCGGGACGGT
GACGGCGCTGTCCTACTCTCCTGACATGAAGCAACTCGTTTCATCTTCCA
ATGATCGGTGCCTCATGCTCTGGAGCTTCCGCGCTCAGCTGAGGGTGAGA
AGGCCTGAAGACCCTGAGGTAGACCGGACGTTTCGCGGGCACAGCGGGAC
GGTGACGGCGCTGTCCTACTCTCCTGACATGAAGCAACTCGTTTCATCTT
CCAATGATCGGTGCCTCATGCTCTGGAGCTTCCGCGCTCAGCTGAGGGTG
AGAAGG
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