mRNA_H-paniculata_contig10262.177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10262.177.1
Unique NamemRNA_H-paniculata_contig10262.177.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10262.177.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.770e-6
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 GGALGS-SLSITGQSPSYLTMNGGTSFLNNWAGENGGGMAITGSLKFNSSETAYITFSGNTADIAGGALFITEAGM 225
            GG +GS S        S L MNG T+F+NN  G NGG +A+ G L  N   T  ++F GN A++AGGA+F++  G 
Sbjct:  537 GGVIGSFSTDSVSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIG-TENVSFIGNAAEVAGGAVFVSGTGF 611
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BLAST of mRNA_H-paniculata_contig10262.177.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.530e-6
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   46 SYLTMNGGTSFLNNWAGENGGGMAITGSLKFNSSETAYITFSGNTADIAGGALFITEAGM 225
            S L +NG T+F+NN  G +GGG+A    L  +  +TA +TFSGN A++AGGA+F++ AG+
Sbjct:  523 STLLINGPTAFVNNTCGGSGGGLAAFDGLSVDI-DTAGVTFSGNAAEVAGGAVFVSGAGV 581
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BLAST of mRNA_H-paniculata_contig10262.177.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 5.560e-5
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   46 SYLTMNGGTSFLNNWAGENGGGMAITGSLKFNSSETAYITFSGNTADIAGGALFITEAGM 225
            S L +NG T+F NN  GENGG +A+  +   + + TA ++F+GN+A  AGGA+F++ AG+
Sbjct:  724 SSLVINGTTTFFNNTCGENGGSLALFDACSLDIN-TADVSFTGNSAGFAGGAVFVSGAGI 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10262.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G301_ECTSI1.770e-643.42Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTL7_ECTSI4.530e-648.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2X5_ECTSI5.560e-545.00Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10262contigH-paniculata_contig10262:5725..5950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size226
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928730.3751903-CDS-H-paniculata_contig10262:5724..59491622928730.3751903-CDS-H-paniculata_contig10262:5724..5949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10262 5725..5949 +
1691480597.7960155-CDS-H-paniculata_contig10262:5724..59491691480597.7960155-CDS-H-paniculata_contig10262:5724..5949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10262 5725..5949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10262.177.1prot_H-paniculata_contig10262.177.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10262 5725..5949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10262.177.1

>prot_H-paniculata_contig10262.177.1 ID=prot_H-paniculata_contig10262.177.1|Name=mRNA_H-paniculata_contig10262.177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
GGALGSSLSITGQSPSYLTMNGGTSFLNNWAGENGGGMAITGSLKFNSSE
TAYITFSGNTADIAGGALFITEAGM
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mRNA from alignment at H-paniculata_contig10262:5725..5950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10262.177.1 ID=mRNA_H-paniculata_contig10262.177.1|Name=mRNA_H-paniculata_contig10262.177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=226bp|location=Sequence derived from alignment at H-paniculata_contig10262:5725..5950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCGCGCTTGGCTCGTCATTGTCGATCACGGGACAGAGTCCTTCATA
CTTAACCATGAACGGTGGTACGAGCTTTCTCAACAACTGGGCCGGAGAAA
ACGGCGGTGGAATGGCGATAACGGGGTCATTGAAATTTAATTCGTCCGAA
ACGGCATATATCACATTTTCTGGCAACACGGCCGATATTGCCGGGGGAGC
GCTGTTCATCACAGAGGCTGGTATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10262:5725..5950+

>mRNA_H-paniculata_contig10262.177.1 ID=mRNA_H-paniculata_contig10262.177.1|Name=mRNA_H-paniculata_contig10262.177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig10262:5725..5950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGCGCGCTTGGCTCGTCATTGTCGATCACGGGACAGAGTCCTTCATA
CTTAACCATGAACGGTGGTACGAGCTTTCTCAACAACTGGGCCGGAGAAA
ACGGCGGTGGAATGGCGATAACGGGGTCATTGAAATTTAATTCGTCCGAA
ACGGCATATATCACATTTTCTGGCAACACGGCCGATATTGCCGGGGGAGC
GCTGTTCATCACAGAGGCTGGTATGGGCGGCGCGCTTGGCTCGTCATTGT
CGATCACGGGACAGAGTCCTTCATACTTAACCATGAACGGTGGTACGAGC
TTTCTCAACAACTGGGCCGGAGAAAACGGCGGTGGAATGGCGATAACGGG
GTCATTGAAATTTAATTCGTCCGAAACGGCATATATCACATTTTCTGGCA
ACACGGCCGATATTGCCGGGGGAGCGCTGTTCATCACAGAGGCTGGTATG
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