mRNA_H-paniculata_contig1026.174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1026.174.1
Unique NamemRNA_H-paniculata_contig1026.174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: D7G9B9_ECTSI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9B9_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 3.660e-78
Identity = 146/277 (52.71%), Postives = 165/277 (59.57%), Query Frame = 1 
Query:  106 LRVRGIHLVLLAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEK-------------------------------------------SVDAVFCDGVSAAVPLLRLAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGRRFLSLSPSSSAPEEGDDNEDRFTTPS-------TQQRLAVLYPPTNVRAYAAR 786
            ++V  +HL L   GGAEMLVVNAAV A   GH+VVIYTSHHDE RCF++T G G LA  I VRGDWLPRHL  GRFTALCAV RMLWL++CV+ +E                                            +   VFCDGVSA VPLLRLAGPVLFYCHFPDKLLCV RG+ LKR YR PLD++EE TTG A+SVAVNS FTA IFR+AFP LGR F S         EG                  + + L VLYPPT+V AY AR
Sbjct:    1 MKVVFVHLDL-GIGGAEMLVVNAAVAACRAGHDVVIYTSHHDESRCFKETTGQGVLAGRIRVRGDWLPRHLAFGRFTALCAVTRMLWLAVCVVASETVAALVASETGGDGGGVGLGDGNARSEVVPTREGTEDEEGRKKGAATVVFCDGVSAPVPLLRLAGPVLFYCHFPDKLLCVRRGSALKRAYRWPLDLLEEVTTGSASSVAVNSDFTAGIFREAFPRLGRAFSSEQKGEV--REGPGGAGGHAAAGAVAAGGGSGRVLRVLYPPTDVEAYPAR 274
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A7S2RMP6_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMP6_9STRA)

HSP 1 Score: 201 bits (511), Expect = 5.000e-60
Identity = 103/177 (58.19%), Postives = 126/177 (71.19%), Query Frame = 1 
Query:  136 LAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSV------DAVFCDGVSAAVPLLR--LAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNL 642
            L  GGAEMLVVNAAV  +  G++V I+T+HHDE  CF +TK DG LA  + V GDW+PR LF GRF  +CA+ RM+W+SL +  T KS+      D VFCD VS  VPLL      PV+FYCHFPDKLLCV RG+ LKRLYRLP+D  EE +TG A +V VNSKFTA +FR++F +L
Sbjct:   13 LGIGGAEMLVVNAAVALENLGYQVEIFTAHHDEAHCFAETKSDGRLAGKVKVYGDWIPRTLF-GRFHVVCAMLRMIWVSLVI--TYKSIVQGDKPDVVFCDQVSHLVPLLTRGTGAPVVFYCHFPDKLLCVDRGSFLKRLYRLPIDWWEEASTGAADTVVVNSKFTASVFRESFSSL 186
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: W7TRM6_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRM6_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.770e-58
Identity = 111/209 (53.11%), Postives = 140/209 (66.99%), Query Frame = 1 
Query:   82 NSDLIARSLRVRGIHLVLLAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWT--------------------EKSVDAVFCDGVSAAVPLLR-LAG-PVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNL 642
            ++D  + +L V  +HL L   GGAE L+VNAAV  ++  H V I+T+HHD   CF +T+G G+LA  I+V GDWLPRH+ LGRFTA+CAV RML+L+L V+W                     ++ VD V CDGVSA VPLLR + G PVLFYCHFPDKLLC +R ++ KR YR PLD +EE TTG AT +AVNS FTA+IF + FP L
Sbjct:   13 SADPPSETLHVTFLHLDL-GIGGAEQLIVNAAVALQQLEHHVTIWTTHHDASHCFGETRGAGSLASHIHVAGDWLPRHV-LGRFTAMCAVIRMLYLAL-VVWISTLSLRKSSCRHSERKKGQIDRRVDVVICDGVSAMVPLLRYVCGFPVLFYCHFPDKLLCTNRASVWKRFYRAPLDWLEEKTTGAATLIAVNSLFTAKIFAETFPRL 218
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A7S2RMS0_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMS0_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.910e-57
Identity = 103/177 (58.19%), Postives = 126/177 (71.19%), Query Frame = 1 
Query:  136 LAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSV------DAVFCDGVSAAVPLLR--LAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNL 642
            L  GGAEMLVVNAAV  +  G++V I+T+HHDE  CF +TK DG LA  + V GDW+PR LF GRF  +CA+ RM+W+SL +  T KS+      D VFCD VS  VPLL      PV+FYCHFPDKLLCV RG+ LKRLYRLP+D  EE +TG A +V VNSKFTA +FR++F +L
Sbjct:   13 LGIGGAEMLVVNAAVALENLGYQVEIFTAHHDEAHCFAETKSDGRLAGKVKVYGDWIPRTLF-GRFHVVCAMLRMIWVSLVI--TYKSIVQGDKPDVVFCDQVSHLVPLLTRGTGAPVVFYCHFPDKLLCVDRGSFLKRLYRLPIDWWEEASTGAADTVVVNSKFTASVFRESFSSL 186
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A835YXC3_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.160e-55
Identity = 107/209 (51.20%), Postives = 130/209 (62.20%), Query Frame = 1 
Query:  184 AKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVF-CDGVSAAVPLLRLAG-PVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGRRFLSLSPSSSAPEEGDDNEDRFTTPSTQQRLAVLYPPTNVRAYAARTADDYP 804
            A + GHEV IYT+HHD   CF +T GDG LA L++  GDWLPR L LGR TA CA  RM +L++ V   E+    VF CDGVSA VP+LRL   PVLFYCHFPDKLLCV R  ++KRLYRLPLD+ EE  TG ++++AVNS++TA IF QAFP L R  L   P                         VLYPP ++  +AAR A+  P
Sbjct:    3 ALQLGHEVAIYTTHHDSRHCFAETTGDGMLAPLVHAHGDWLPRQL-LGRCTAACATVRMAFLAIHVAIRERRRAHVFICDGVSAPVPVLRLTNLPVLFYCHFPDKLLCVERSNIVKRLYRLPLDLCEEVFTGMSSTIAVNSRYTAGIFAQAFPLLRR--LGWRP------------------------RVLYPPIDLNGFAARPAEARP 184
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A812TU59_SYMMI (Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TU59_SYMMI)

HSP 1 Score: 187 bits (476), Expect = 9.790e-54
Identity = 99/182 (54.40%), Postives = 118/182 (64.84%), Query Frame = 1 
Query:  106 LRVRGIHLVLLAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVFCDGVSAAVPLLRLAG-PVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGR 648
            ++V  +HL L   GGAEMLVVN A   KE GHEV I T+HHD +RCF+ TK  G +   I V G WLPR +  GRFTA CA+ RM+++S     +    D VF DGVS+ VP+  + G PVLFYCHFPDKLLC  R TL K+ YR  LD  EE TTGCA  + VNSKFTA  F  AF  LG+
Sbjct:    1 MKVVLVHLDL-GIGGAEMLVVNIACAMKELGHEVKILTAHHDPNRCFEATKKGGAVGDCIEVIGGWLPRQIC-GRFTAACAIVRMMYISFVACRSNFVPDVVFVDGVSSPVPIFHIFGFPVLFYCHFPDKLLCTDRSTLFKQAYRYVLDAFEENTTGCADVIVVNSKFTANTFHGAFSVLGQ 180
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A8K1C4Q1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Q1_PYTOL)

HSP 1 Score: 189 bits (481), Expect = 3.290e-53
Identity = 91/175 (52.00%), Postives = 122/175 (69.71%), Query Frame = 1 
Query:  145 GGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWT-EKSVDAVFCDGVSAAVPLLRLAG-PVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGRRFLSL 663
            GGAE LVVNAA+  ++K   V ++T+HHD   CF++T+GDG LA+ I V GDWLPR + LG+  A CA+ R+L+++L + +     +DA F D VS ++P LR  G PVLFY H+PDKLL +  G+ LK LYRLPLD +EE TT C+  + VNSKFT  +F QAFP +GRR L +
Sbjct:   53 GGAENLVVNAAIALQKKNVHVTVFTAHHDVSHCFEETRGDGPLAKCIRVHGDWLPRTI-LGKLYAFCAILRILYVTLVITFVYANEIDAFFVDQVSVSIPFLRFIGKPVLFYGHYPDKLLVIQSGSKLKHLYRLPLDTLEEVTTVCSDVIVVNSKFTRSVFEQAFPRVGRRELGI 226
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A1V9YAC3_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAC3_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.160e-53
Identity = 108/244 (44.26%), Postives = 143/244 (58.61%), Query Frame = 1 
Query:   73 HEGNSDLIARSLRVRGIHLVLLAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVFCDGVSAAVPLLR--LAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGRRFLSLSPSSSAPEEGDDNEDRFTTPSTQQRLAVLYPPTNVRAYAARTADD 798
            H+ N    A +L+V  +H  L   GGAE L+VNAAV  + KGH V ++TSHHD   CF++T+G G+LAR + V GDWLPR + LGR  A CA+ RML+++  +   +   D  F D V+  VPLLR  L  PV FY H+PDKLLCV R + LK+LYR PLD +EE TT  A ++ VNSKFTA +F+ AFP L  R                            +L++LYPP N+  +AA  + D
Sbjct:   36 HKANG---ATALKVSFLHPDL-GIGGAENLIVNAAVALQSKGHTVHLFTSHHDVGHCFEETRGTGSLARFVVVYGDWLPRTI-LGRMYAACAILRMLYITGRLALQQWDADVFFVDQVALPVPLLRALLGRPVYFYGHYPDKLLCVDRASRLKQLYRYPLDKLEELTTCAADTIVVNSKFTASVFQNAFPMLQSR----------------------------QLSILYPPVNLADFAAPVSPD 246
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BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: A0A6G0XUX0_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XUX0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.200e-52
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 1 
Query:  136 LAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVFCDGVSAAVPLLR--LAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNLGRRFLSL 663
            L  GGAE L+VN AV  ++KG++V I+TSHHD + CF +TKGDG LA+ I V GD+LPR +F GR  A CA  RM++++L +   E   D  F D VS  +PLLR     PV FY H+PDKLLC  R +LLKRLYRLPLD +EE TT  A ++ VNSKFTA +F+ AFP+L  R LS+
Sbjct:   86 LGIGGAENLIVNCAVALQQKGYDVHIFTSHHDVNHCFGETKGDGPLAKWIVVYGDFLPRTIF-GRLYAFCAFLRMVYITLRLFLGEWDTDIFFLDQVSLPIPLLRAYFGKPVYFYGHYPDKLLCTDRRSLLKRLYRLPLDSIEETTTCAADTMVVNSKFTASVFKSAFPSLPARQLSI 262
[Close]
BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Match: W4H4A0_9STRA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4A0_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.070e-51
Identity = 95/191 (49.74%), Postives = 131/191 (68.59%), Query Frame = 1 
Query:  100 RSLRVRGIHLVLLAWGGAEMLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWLPRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVFCDGVSAAVPLLR--LAGPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKFTARIFRQAFPNL-GRRFLSL 663
            R ++V  +H  L   GGAE L+VN AV  + KG+EV I+TSHHD + CF++T+GDG LA+ + V GD+LPR +F GR  ALCA  RM++++L +  T+ + D  F D VS  +PLLR     PV FY H+PDKLLC+ R ++LK++YR PLD +EE TT  A ++ VNSK+TA +F  AFP+L  R  LS+
Sbjct:   45 RKVKVTFLHPDL-GIGGAENLIVNCAVALQNKGYEVHIFTSHHDPNHCFRETRGDGPLAKWVVVHGDFLPRTVF-GRLYALCAFVRMVYITLYLFLTQWNTDVFFLDQVSLPIPLLRAYFNRPVYFYGHYPDKLLCIDRSSVLKQVYRWPLDTLEEATTRAADTMVVNSKYTASVFEAAFPSLHARHHLSI 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1026.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B9_ECTSI3.660e-7852.71Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ect... [more]
A0A7S2RMP6_9STRA5.000e-6058.19Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=lab... [more]
W7TRM6_9STRA6.770e-5853.11Alpha-1,3/1,6-mannosyltransferase ALG2 n=3 Tax=Mon... [more]
A0A7S2RMS0_9STRA1.910e-5758.19Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=lab... [more]
A0A835YXC3_9STRA4.160e-5551.20Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Tri... [more]
A0A812TU59_SYMMI9.790e-5454.40Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) ... [more]
A0A8K1C4Q1_PYTOL3.290e-5352.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YAC3_9STRA6.160e-5344.26Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Ach... [more]
A0A6G0XUX0_9STRA5.200e-5254.49Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Aph... [more]
W4H4A0_9STRA1.070e-5149.74Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1026contigH-paniculata_contig1026:9047..16193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue9.1e-63
Seed eggNOG ortholog2880.D7G9B9
Preferred nameALG2
KEGG rclassRC00005,RC00028,RC02748
KEGG koko:K00695,ko:K03843,ko:K12188,ko:K20296
KEGG ReactionR00806,R05973,R06238
KEGG Pathwayko00500,ko00510,ko00513,ko01100,ko04144,map00500,map00510,map00513,map01100,map04144
KEGG ModuleM00055,M00410
Hectar predicted targeting categoryother localisation
GOsGO:0000009,GO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004376,GO:0004378,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033164,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sucrose synthase activity
EggNOG OGsCOG0438@1,KOG0853@2759
EC2.4.1.13,2.4.1.132,2.4.1.257
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04131,ko04147
Exons6
Model size969
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1026.174.1prot_H-paniculata_contig1026.174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1026 9176..13301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.9011886-UTR-H-paniculata_contig1026:9046..91751622928729.9011886-UTR-H-paniculata_contig1026:9046..9175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 9047..9175 -
1691480597.5480227-UTR-H-paniculata_contig1026:9046..91751691480597.5480227-UTR-H-paniculata_contig1026:9046..9175Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 9047..9175 -
1622928730.002893-UTR-H-paniculata_contig1026:13301..133121622928730.002893-UTR-H-paniculata_contig1026:13301..13312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 13302..13312 -
1691480597.617599-UTR-H-paniculata_contig1026:13301..133121691480597.617599-UTR-H-paniculata_contig1026:13301..13312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 13302..13312 -
1622928730.0305626-UTR-H-paniculata_contig1026:16048..161931622928730.0305626-UTR-H-paniculata_contig1026:16048..16193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 16049..16193 -
1691480597.6296113-UTR-H-paniculata_contig1026:16048..161931691480597.6296113-UTR-H-paniculata_contig1026:16048..16193Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1026 16049..16193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.9136655-CDS-H-paniculata_contig1026:9175..94641622928729.9136655-CDS-H-paniculata_contig1026:9175..9464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 9176..9464 -
1691480597.5607285-CDS-H-paniculata_contig1026:9175..94641691480597.5607285-CDS-H-paniculata_contig1026:9175..9464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 9176..9464 -
1622928729.9309702-CDS-H-paniculata_contig1026:11046..111351622928729.9309702-CDS-H-paniculata_contig1026:11046..11135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 11047..11135 -
1691480597.5697966-CDS-H-paniculata_contig1026:11046..111351691480597.5697966-CDS-H-paniculata_contig1026:11046..11135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 11047..11135 -
1622928729.9459383-CDS-H-paniculata_contig1026:11706..118121622928729.9459383-CDS-H-paniculata_contig1026:11706..11812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 11707..11812 -
1691480597.5800135-CDS-H-paniculata_contig1026:11706..118121691480597.5800135-CDS-H-paniculata_contig1026:11706..11812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 11707..11812 -
1622928729.963447-CDS-H-paniculata_contig1026:12830..129211622928729.963447-CDS-H-paniculata_contig1026:12830..12921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 12831..12921 -
1691480597.5957363-CDS-H-paniculata_contig1026:12830..129211691480597.5957363-CDS-H-paniculata_contig1026:12830..12921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 12831..12921 -
1622928729.9784787-CDS-H-paniculata_contig1026:13192..133011622928729.9784787-CDS-H-paniculata_contig1026:13192..13301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 13193..13301 -
1691480597.6079485-CDS-H-paniculata_contig1026:13192..133011691480597.6079485-CDS-H-paniculata_contig1026:13192..13301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1026 13193..13301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1026.174.1

>prot_H-paniculata_contig1026.174.1 ID=prot_H-paniculata_contig1026.174.1|Name=mRNA_H-paniculata_contig1026.174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MLVVNAAVVAKEKGHEVVIYTSHHDEDRCFQDTKGDGTLARLINVRGDWL
PRHLFLGRFTALCAVGRMLWLSLCVLWTEKSVDAVFCDGVSAAVPLLRLA
GPVLFYCHFPDKLLCVSRGTLLKRLYRLPLDMVEEFTTGCATSVAVNSKF
TARIFRQAFPNLGRRFLSLSPSSSAPEEGDDNEDRFTTPSTQQRLAVLYP
PTNVRAYAARTADDYPCQAGQIGKSWY*
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mRNA from alignment at H-paniculata_contig1026:9047..16193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1026.174.1 ID=mRNA_H-paniculata_contig1026.174.1|Name=mRNA_H-paniculata_contig1026.174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7147bp|location=Sequence derived from alignment at H-paniculata_contig1026:9047..16193- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCTTTCAAGGCACTTTCGTCCTGCCTTGCGTCTTACTAAACCTCGGTG
TAGGTCAGCACTTTGGTACTCTCACGAAGGGAACTCTGACCTCATAGCCC
GCTCGCTGCGGGTTCGTGGGATACATCTCGTCCTACTTGCGTGGGGTGAG
ACTTCTACTTCGACGCCTTCGTGATGTACTTGGGGGTCTGTCCATTACAA
CGGGTAGCTGTAGCGACTCCAGGGTGATGCAGTGTATATCCTCCCATTCG
CTTTCCTTCTCTATCAGGATCATCCGGTAGACACACTCGTGGTCCTCGCT
CCTTTCGAGGTTGAGCGCGAGTTCGCAGATCTTGAAGCACTTGTTCACGT
CGGTCAGTATTTCGTCCCCAGACCTCTTTGATTCATATCGATACCGCGCC
CCTGCCGGACAGCTTGAATTTACCCGTTTTCGGGTCTGCCACTGTAATGG
CGCTCCTGGCATATATTTTCCACGCGCTCCGCGCTTTATTAGCTGAGTCA
CGGTTAGAATAGGCATGTTCGAAACAGGGATGCTGTCGTAGGTGTCGTAG
GACCCAATTTGCGCTTGTGAGAAACGTCAACCACATTCTGGCAGATCTCT
TAACTGAGAAGTGACCCGAAAGACCCAAAGTTCAGTTATTCGTGTGTCAT
GACCCATCATTTGGTATATTTTCCAGCGTTGCAAGCAGAGCAGCTCACAG
TGCCACCTCCGGCGAAGTCGGTCGCCGTGGCAGACTCACTCAAGCTTCGC
CTCAGATCCCGACGCAACCTAACCCAACTCAATGCAACACTACTCCACCC
AACAGAAATCTCCAACCCAAACCCAAACCTACAAATTACCATAGGTCCAT
TGATGAGAATACACATGTAGAGGATTTTGAGACGCGACAGAGTCGAACTA
CCGTTAGATCTGGAGATATCGATGTCACTGGGTTTTGAGTTCTTTTTAAA
TACGAGTTTCTCGTCAATTGTGGCGGCACTGACGAGGAATAGTGTCCTGT
TATAAGGTATTGTTGAAATCTATCGAACGAAGGGTTATATCGACTGTGTC
AGGTCTCCGTTCTTGAGAGGTCGCGTTTGAGAGAGTTGTGCTCCTCGGTG
AAATCGATTCCTCCAGGTTTCGGTATATCTCGTGCGCAGGGAAGCAGCAC
CGGTTATTGGCCAGTTCTTGCGCCGCTCTTGATGTGGATGACCACATGTT
GTCTCCGAGCTTATTCGTTACGTTGAGCAGATGTTGTTACAACTTTTTTT
AATGTGGTTTCGTGCATGCACTTGGGCATTTTTCCTAAGTCAACCACAAT
ACGAGGCGGTTTGATTGAGTGAGATTGGCTCGGTATTGGCCTAGAAACAA
CCTTGAGTGAGATTGGGTGCTCATCGAACTGCACTTTGACACTGTTCGGA
TTGAATCGTCATACAGACCAGGTGGTCTGTGACGCATCGCATGGTGGGAC
ATGCTGAAAATGTTGAATACGTGAACCATGGACAAGTAGTTTGGGTATTT
TCCTTACGTTCCAGGTCTGACTGATTACACACTCGATCGACAAAAAAAAA
AGAGAAAAGTCGCCATTCATATCTTGGTCCCAACTCGTCAGTGTATATAC
GCCCAGTCGCCAGGAGATCATAAATGTGGTCACGTAAAGTGTAAAAAAAA
AGTGTTGAAAAAAATACACCCTTTCGTTAATTTTGATTTGGTCCTGCATG
GCTGATAGTATGCTCCAGGTACCGCATCTCAATCCACTGCCAGGCCTTCT
CGATGCAAAAGTAACTTCTTTTTCAAATTTGACAACTTTGTAGTCTTTCG
AATTTTTACGGGTTGTGATGAAGAATTCGTTCTGTAGCGAGACATGGGTG
GATGTGAACCGGGGTCCGGGACCTGCAAGTCATCACTCATAGGGTGCCAA
TTTTTTTTTTTACAAACACATATATTTTTTTGCAAACACCCTAGTGCATG
AGCGTGATTATCACAACAAACGAAGGGCGCCCGAACGCTGGACATGGAGC
TCTCACGACAACACACTTGACCTCTACTACGAAGTCAAGGAATTTTTTTT
TTACTGGGTAGAGATGTTACGGCATTTCATCCGAGAAACGATTTAGTATA
TAATTTTTACACATGGGGAATTTGGTATTACTGCACGGCATGCACGCGAG
AGTTGAATCGTCGGATGTATACGTGATCCATGTGCAGCACCTTTGCAGCT
GCCTCTCTGCCCATGCAGCAGCTTGATTTTTTATTTTTTATTTTTTTATA
CCTAAATCTGATAGGAGTATGAAAATGGTGAGTACACTCAAACAGTGTGT
TTATATTTGATGAAGCGGCTGTATGTGGCGGTTACGTACACCTGTACCGT
TGCACAGTCAACTCGTGTATCCTACTCGGACTCACATTTAACGACGTTTA
CACACAGTTTAGCTTGAACAATCAACCTGTACTGTGTGTTTGTATAGTCA
GTATGATCAGTTTGTTAGCACGCTGACGGTGCCTTTTGTTTGCAATACAC
AGCTGTCAACGACACTCTGTGCTCACCTCGCAGAGAAGATAGCTAGGGTT
TGTTCCTGACGGTTATGCGTGAATTGCATGGCGCTATCCGTACCACAGAT
GAAGTATAGGCTGGCGATGGATTTGATATGGCCTCGCATGTGTGGCACTG
AGCCTGGACTGCAAAAAATGGTCACGCTGAAGACATCAATTTGGAGTGCT
TCTCCGGTGAATGGCCACTTTTACATGGGCACATCGCCCTTGCCATGTCG
TCCGTGAAGTTTACATAGTTGATATTTCAGGTCCGGCTGGTTAATCTCCA
CGTCTCTATCCCCCCTCATTCCTCCGTTCCCCCGTTCCCCCCACGTGCCT
ATCCACCTGCTCCGGAAATTTCGCCGGATAGGGGGAGCAGAAATGTTGGT
CGTTAATGCAGCCGTAGTGGCCAAAGAGAAGGGCCACGAAGTCGTTATCT
ACACTTCACACCACGATGAGGATCGGTGTTTCCAAGATACCAAAGGAGAC
GGTGAGAGATAAACCCTCCCCTTTCGATGGTGGTCCAGCTGGAGAAAAGA
TCGATGTACCGACTGTAACATACATCATGCAGGCACATACACGGTCTAAG
AGCGTAAAATGAAAGTAGACTCGGACAAAGCAAAGAAGGAGCTTCGTTTT
TTTCTATCAGGGCTTAGGGGTCGCGATCAGTGATAGTAACTAGTCGTTCG
ATGTCTTGAAAGCTCTACGGCGTAACCTGCACCCGCCCTTCCTTTCTTCC
CCTCTTGTGCGCTACCGGGCAGGTACATTAGCGAGGCTAATCAACGTGCG
TGGGGACTGGCTACCTCGACATCTTTTTCTCGGAAGATTCACTGCTCTGT
GCGCAGTAGGCAGGTACGCGACACCACACTTTGAGCCCTCCAATGAACAA
GGGAGCTCAACATGAGCTAAGCAGTCGTTAGGCGGATTCTGCAAGTGACA
AATCCAAGACGAGGGGGTAGGGAGGGGTTGAAATCGACTGTATCCCTGCT
TTTTGACATTTATGCCGACTAGAAACGCCCCCTGCCGAATATATATCTTG
CTAATTGAATCAGACTAGCCATGTGGTGTGTACATTTTCACACATTTTTT
TATCTCGTTTTTGGCCACTAACAGCGGGACTGAGGGATCGACATGAAACG
ATCTGGGTAATCTGGGCGATCGAGGGATACGCGCGAGGGTAAAACTCTGC
TCGGTTCAGTAGGTCCAGAGATTGGTTTGACCCGTTCAAGCTTAATAGAC
AGGAAAGGGGGAGGAAGGGGGGTCGGGTGAGAGGACTAGCTAAAAGATGC
GTACATTCCTTGTACTTTACCTGTAATGGTAGATTTGAAGTAAGAGAAAA
TTCCTCCCTCTCGATGTCTGCATCGTGTTATTTTTTCCGACGCAGGGCGT
TTTGACTTATTACGTACGTTTCAAGTGTGCCAGCGTCAGAAGTCTGCCCC
GCATGCCCCCCCCCCTGCAGAAAGACGAATGGGAATACTTGTGGATTCGC
AAGGACAGTGAAGTTATATTCGCCTTAAGGCACAGAATGTGCAGGCATGG
TTCGACAGAACGAAGTGTTGACCGGTAGCTGTTTATTGGTTGTATTGTAG
TATTCGGAGGAGCTTTACTGAAGATGGTCCGCGGCATACCGTACAGATGT
GCTCATGCTGAACTTCGACGCAAACACTTTTCGTTTTCGTCGCTGATGTA
TTCACTTTCCTGGAGTCATACCTTTATTCGTCTAACGGGTGTAAAAGCCT
CCTTTATTATGTTCGCTTGTAGTGTTTTTTTTTTTTTAATGTAGGTGGAA
TCGCCTCTTTTTTCTTGTCTTCATTTGGCTGGTCTCCGTATTTGCTTGTA
CCCTCTCGACGTTGTTGTCTTTTTAACGCAGGATGTTGTGGCTGTCGTTG
TGCGTTCTCTGGACAGAGAAGTCGGTGGATGCTGTTTTTTGCGACGGCGT
GTCAGCGGCAGTGCCCCTGCTTCGGCTGGCCGGACCTGTAAGTTGTGTAA
TACCCCTTGTTAGTGCATCGAGGTGCGAACGTTTGGAACCGGAATAACAC
CCTACAGAACTCGAATTTGTATATGCAAGAAAACTTTCAAAGTTACAATT
TGCGTCGAAAATGAGCGATCAGTTTTTCGTTTTGTGTTTGAGGGTTTTCA
TTTACTTGCTCACACGGGAAGTTTGGGGGCTCGGGGTACAAGAGGTTGGG
GATCATAACATCAATATTGACCCAACCAACCCATGCACAGGAATGAAGAT
GGATGCTACTAACTTCGGTGGCATAAGGGTTGACTCATAAGTGAGGCTTA
CAGTGGTTCAGTTGGGTAAATAGTTTTTTTTTCTGTCATGCGTTGACGTC
AAGATGATTTGATGTCTATGTTTACTTGGACGTTTACTCTACTAATCTAT
ATATGGCGCACGAGTAACGATGCCTATTTATGGGCGTGCCGCCGCGGGTT
TTTGCGCTGAATGAACAGCTGTTGGAGTGGGGGGATGGTCGTTTTCATGG
TGGGCGGCACTTTCGATAAAAAATGACCACCCGAATTCGACCGCACAATA
TCGCACAGGTGTTGTTCTACTGCCACTTCCCGGACAAGCTCTTGTGCGTC
AGCCGCGGAACACTTTTGAAACGGCTGTATCGACTACCGTTGGACATGTA
AGTTTGCCTCCTTTTTTTTTTTACCGGATTTGAAGTACCGCACAGTAGTT
GTCATACTATAGGGTATCTGTATATACCATTATTGTGAATGAATTGTAAA
AAACGCCACAAAATTTTACGTCTTACTCATGCGGCGTTGCGAGCCAACCT
TGCAGTGTTATTTTCAGCGCGAGATTGTTCAATTAGTTGATTCTTCACGT
TCAAGTGTCACCTGTTCTACCTGTACCTTTTTGTAGTGTAAGGGCGGACT
TGCCGTTTCTTTTGTGCGTTGTTGATTTATTGGTGAATCTACACCGAGCT
TCTGATGACACGTTGGTATTTATATACCTCTTCTATACCGTAAGTACCAT
CGATTGTGTTCGGCAAATTGTATCTTCAGATCTAAGACTGTTCAGAGGCT
GCGGTAGTAGTCGTTGGAAAGCTGAAGTTTGATGGTCTCGTCTGGGGCTA
TTCCGAAGTGCATTCCGGTTTGTGTTTCAGGATTGATGGCCGCTTGAGCG
TGGCATTGGGAACATACGAAAAGGGGTACAACACATCATTTTTTCCACGG
CTCTTAACGTCACAAAACGTTACACATTTTATTTTAGTTTTTGTGTAGCG
TGATGTGTGACGTTTTGCGACGTAAAGACTCCTGCTGTTTTCGGCCGATG
CATTTTTTTGCGATGGGCGCGCTTCAGATGAATCTCGCCAATTTCCGTGG
AATTTCGGGGATCAGCCCCCAAAATATGCATGATCATAATAAGGAGGGAA
AATTGGAGATCGTTACGTCCCCGTATACACTCGACCGAGACTTGACTTGC
ACATCGGAACTAAAATGTCACGTTGTATAGCACCCCTGGAGAGGTGTTCA
CCGTCGTTGGGGGACTGGGGGGGGGGGGGGGGAATTGGACTTATTAACTG
GCGGATTCTACGAAAGCCTCCCCCCGAATTCTGGTCAACCACCCTCGTGC
AAGTTACAGGGGCCCTTAATTATCTGGTACATACAGTAACACGCTGAGAA
GGTGTTGCTCTATAACGTTGGATAGGGAATATTGTGGGACAAGAAAATGT
AACTTTCCCACCTCTTCTGTGACATTTTCTTTTCGCCCCGCCCCTAAACA
TTGAACGAGTCCGTTCCCTCTGTGAAATTTTCTCGGTCCTCCCTTCACCC
GTGAGCATTGAACTACTATTCATCACGTTGTGTCAACACCCCGTAAATCG
CACTTTTGAAACTCGGTTCCTTGAAAAAAGGGCTTACCGGTTTTTTTTTT
TCGTTTTTTCGAGCAGTCGGACTTCGTAGACGGCCAAAATGTAGTTTTGG
CAATGACCGGTCTCTGATTAGTGACGGAGGACGTCCGACCGAATGCCGCA
ACCAGCTCTAAAAAGCTGGTTGGTGCATCTCAAGTGCAAACGACGTCCCA
CTTTTTTTATGGGTTCGCTGCACATCGAGAATGAGCAAACACAAGCATTT
CTCGTTACGGCCAAATAAAAAGCAAGTACTCTCGCAGCTGATGAATGGGT
CGAGAGGTCTGTCGTGGAGGGTCAACTTGTAACCGTCTGTTTTACATGCA
CACACGTTTTTGGCGGTGTTGCTTCTTAGGGTGGAGGAATTCACGACGGG
GTGCGCCACATCTGTGGCCGTGAATAGCAAGTTTACCGCAAGAATTTTCC
GACAAGCGTTTCCGAATCTGGGCAGGCGTTTCTTGTCGCTTTCCCCTTCC
TCTTCTGCTCCAGAGGAGGGGGATGATAACGAAGACCGATTTACTACCCC
CTCAACACAGCAACGCCTCGCGGTCCTTTATCCCCCCACAAACGTCCGGG
CTTACGCGGCCCGCACAGCAGATGACTATCCCTGCCAAGCAGGCCAAATA
GGTAAGAGCTGGTACTAATGTTCTCAAAGTTGTTATATATGTGCATTTCT
GTTTTTTTGTATTTTTTCATCATGTTTTTTCAAGATCAAATGTGAAGAAA
CAAGAGCGGCTGTCTTGTTTTAACTGTTTTGTTCCCGAATCGAATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1026:9047..16193-

>mRNA_H-paniculata_contig1026.174.1 ID=mRNA_H-paniculata_contig1026.174.1|Name=mRNA_H-paniculata_contig1026.174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig1026:9047..16193- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTCGTTAATGCAGCCGTAGTGGCCAAAGAGAAGGGCCACGAAGT
CGTTATCTACACTTCACACCACGATGAGGATCGGTGTTTCCAAGATACCA
AAGGAGACGATGTTGGTCGTTAATGCAGCCGTAGTGGCCAAAGAGAAGGG
CCACGAAGTCGTTATCTACACTTCACACCACGATGAGGATCGGTGTTTCC
AAGATACCAAAGGAGACGGTACATTAGCGAGGCTAATCAACGTGCGTGGG
GACTGGCTACCTCGACATCTTTTTCTCGGAAGATTCACTGCTCTGTGCGC
AGTAGGCAGGTACATTAGCGAGGCTAATCAACGTGCGTGGGGACTGGCTA
CCTCGACATCTTTTTCTCGGAAGATTCACTGCTCTGTGCGCAGTAGGCAG
GATGTTGTGGCTGTCGTTGTGCGTTCTCTGGACAGAGAAGTCGGTGGATG
CTGTTTTTTGCGACGGCGTGTCAGCGGCAGTGCCCCTGCTTCGGCTGGCC
GGACCTGATGTTGTGGCTGTCGTTGTGCGTTCTCTGGACAGAGAAGTCGG
TGGATGCTGTTTTTTGCGACGGCGTGTCAGCGGCAGTGCCCCTGCTTCGG
CTGGCCGGACCTGTGTTGTTCTACTGCCACTTCCCGGACAAGCTCTTGTG
CGTCAGCCGCGGAACACTTTTGAAACGGCTGTATCGACTACCGTTGGACA
TGTGTTGTTCTACTGCCACTTCCCGGACAAGCTCTTGTGCGTCAGCCGCG
GAACACTTTTGAAACGGCTGTATCGACTACCGTTGGACATGGTGGAGGAA
TTCACGACGGGGTGCGCCACATCTGTGGCCGTGAATAGCAAGTTTACCGC
AAGAATTTTCCGACAAGCGTTTCCGAATCTGGGCAGGCGTTTCTTGTCGC
TTTCCCCTTCCTCTTCTGCTCCAGAGGAGGGGGATGATAACGAAGACCGA
TTTACTACCCCCTCAACACAGCAACGCCTCGCGGTCCTTTATCCCCCCAC
AAACGTCCGGGCTTACGCGGCCCGCACAGCAGATGACTATCCCTGCCAAG
CAGGCCAAATAGGTAAGAGCTGGTACTAAGGTGGAGGAATTCACGACGGG
GTGCGCCACATCTGTGGCCGTGAATAGCAAGTTTACCGCAAGAATTTTCC
GACAAGCGTTTCCGAATCTGGGCAGGCGTTTCTTGTCGCTTTCCCCTTCC
TCTTCTGCTCCAGAGGAGGGGGATGATAACGAAGACCGATTTACTACCCC
CTCAACACAGCAACGCCTCGCGGTCCTTTATCCCCCCACAAACGTCCGGG
CTTACGCGGCCCGCACAGCAGATGACTATCCCTGCCAAGCAGGCCAAATA
GGTAAGAGCTGGTACTAA
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