mRNA_H-paniculata_contig10247.170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10247.170.1
Unique NamemRNA_H-paniculata_contig10247.170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.370e-101
Identity = 223/361 (61.77%), Postives = 257/361 (71.19%), Query Frame = 1 
Query:    1 ASALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATAEDVLDFVSESKGSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFDDDELNLSD-------------LEETLEEGDGNADVFSGQKTLGDLSEARKKDGEELDDERQLMMLQRELQGDRGNAARWGVGEDSMSGSALFKPTPTVAEVRKAQTDELLVKLGGRAELPAQAVRRITRTI 1044
            A++LLMLSG+GDPSGCGEGFSFL RPAEQ K+ T SLT S+K VA+RSVQKVTGTN DLRRLTM+QLASTCEAMGIPKDTVKTL+RWDRVHMIKELAGVAVAENVKDQNIYARFVRK+RP+AT+DKDLY+ATC EIW+RQA ALSATAEDV ++ SES  SS +             XXXXX                 XXXXXXXXXXXXXXXXX             + D+L+LS              +EETLE GDG+ D     K+L DLS + +K+ +ELDDERQ  MLQ++L G RG AARWG GE     +     +  V E RKAQT+ELL +LGGRA+LPAQAVRRITRT+
Sbjct:  266 AASLLMLSGMGDPSGCGEGFSFLPRPAEQAKA-TTSLTTSQKIVAERSVQKVTGTNSDLRRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAENVKDQNIYARFVRKRRPNATIDKDLYRATCNEIWERQALALSATAEDVQEYGSESASSSKAKDKAEASKGKGGEXXXXXVAGASPGGSKDSDKGEEXXXXXXXXXXXXXXXXXLD---------GLNVDDLDLSGDXXXXXXXXXXXXMEETLEGGDGDGDAPVA-KSLQDLSSSSQKNTDELDDERQYRMLQQDLHGVRGEAARWGTGEGP-DAAPQGSMSLNVVEARKAQTEELLGQLGGRAQLPAQAVRRITRTV 614
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 8.020e-100
Identity = 241/361 (66.76%), Postives = 274/361 (75.90%), Query Frame = 1 
Query:    1 ASALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATAEDVLDFVSESKGSSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAFDDDELNLSDL-------------EETLEEGDGNADVFSGQKTLGDLSEARKKDGEELDDERQLMMLQRELQGDRGNAARWGVGEDSMSGSALFKPTPTVAEVRKAQTDELLVKLGGRAELPAQAVRRITRTI 1044
            A++LLMLSG+GDPSGCGEGFSFL RPAEQ K+ TASLT S+K VA+RSVQKVTGTN DLRRLTM+QLASTCEAMGIPKDTVKTL+RWDRVHMIKELAGVAVAENVKDQNIYARFVRK+RP+AT+DKDLY+ATC EIW+RQA ALSATAEDV ++ SES  SS +             XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX             + D+L+LS               EETLE GDG+ D     K+L DLS + +K+ +ELDDERQ  MLQ++L G RG AARWG GE S   +     +  V E RKAQT+ELL +LGGRA+LPAQAVRRITRT+
Sbjct: 1052 AASLLMLSGMGDPSGCGEGFSFLPRPAEQAKA-TASLTTSQKIVAERSVQKVTGTNSDLRRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAENVKDQNIYARFVRKRRPNATIDKDLYRATCNEIWERQALALSATAEDVQEYGSESASSSKAKDKVEASKGKGGEXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXLD---------GLNVDDLDLSGXXXXXXXXXXXXXXEETLEGGDGDGDAPVA-KSLQDLSSSSQKNTDELDDERQYRMLQQDLHGVRGEAARWGTGEGS-DAAPQGSMSLNVVEARKAQTEELLGQLGGRAQLPAQAVRRITRTV 1400
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A835ZI20_9STRA (DUF3591 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI20_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.110e-26
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1 
Query:   10 LLMLSGVGDPSG-CGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALS 435
            ++ L+G GDPSG CGEGFSF  +PAE   S      P    + Q +++KVTGT+ DLR+L M +L      +G+ +++V  LKRWDRV MI  +A +AV  N +D    +RF RK R S   +K  Y+    EIW+RQA ALS
Sbjct:    1 MMRLNGTGDPSGGCGEGFSFAQKPAEA--SGPFDNLPKNFQLDQLAIRKVTGTSADLRKLNMRELEKQLVDLGMDRESVAHLKRWDRVQMISHMANMAVTHNTQDAASVSRFTRKPRKSTAGEKKQYRHNIQEIWERQAHALS 141
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A7S2VAC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAC4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.680e-21
Identity = 56/144 (38.89%), Postives = 85/144 (59.03%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALS 435
            + ++ L+G+GDPSG GEGFSFL R  + + S +              V+K+TGTN DLR+LTM Q+AS   + G+ +  + TLKRWDRVH I++L+  A ++      +  RF R ++   +  K++Y+     IW RQ A+LS
Sbjct:   33 TGMMKLTGLGDPSGTGEGFSFL-REVDSKPSKSVG-----NAAINAQVKKITGTNDDLRKLTMPQMASVLRSFGMAQKQIDTLKRWDRVHCIRDLSTKAASDGTAGDGL-ERFARGEKLKLSEQKEMYRERIRLIWKRQIASLS 169
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A2D4C5L0_PYTIN (Transcription initiation factor TFIID subunit 1 puta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5L0_PYTIN)

HSP 1 Score: 100 bits (250), Expect = 1.390e-19
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLT----ASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATA------------EDVLDFVSESKGSSGS 492
            S +L LSG+GDPSG G+GF F+  P  + K       A    ++    Q++V  +TGT  DLR+LTM Q       +G+P   +K L+RWDR+H+++EL+ VA A  V      ++F R  + + +  +  Y+  C  I++RQ   LSAT             ED+LD + E    +G+
Sbjct:  788 SGMLALSGIGDPSGRGDGFXFVRAPQTRAKRKDGEDDAPQPGADSARVQKAVAAITGTTADLRKLTMKQAGDVLRNLGVPDGDIKKLRRWDRIHLLRELSNVATA--VGRGGALSKFARTGQKTLSAQQQAYRRKCDVIYERQMNVLSATTTTFSSDEDSSEDEDILDELEEDLVGTGN 964
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: B7FQ37_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ37_PHATC)

HSP 1 Score: 100 bits (249), Expect = 1.900e-19
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALS 435
            + ++ L+G+GDPSG GEGFSF+ R A+ + S +              V+K+TGT  DLR+LTM Q+AS   + G+ ++ + TLKRWDRVH+I++L+  A ++ + D     RF R ++   +  K +Y+     IW RQ AALS
Sbjct:  821 TGMMKLTGLGDPSGQGEGFSFI-READSKPSKSVG-----NAALSAEVKKITGTEDDLRKLTMKQMASLLRSYGMTQEKIDTLKRWDRVHVIRDLSTKAASDGIGDG--LERFARGEKMKLSEQKQMYRDRVRVIWRRQIAALS 956
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A7S4AWQ8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWQ8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.390e-19
Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATAED 450
            S ++ L+G+GDPSG GEGFSFL R A+ + +  A   P  +T     ++K+TGT+ DLR+LTM Q+     + G+ ++ V TLKRWDRVH+I++L+  A ++ + D     RF R ++   +  K +Y+     IW RQ AALS+   D
Sbjct:  511 SGMMKLTGLGDPSGIGEGFSFL-READTKPNKHAG--PIGQTA---EMKKITGTSDDLRKLTMKQMGRILRSYGMQQNKVDTLKRWDRVHVIRDLSTKAASDGIGDG--LQRFARGEKMKLSEQKQIYRERIQVIWKRQIAALSSGLGD 651
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 100 bits (248), Expect = 2.550e-19
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAAL 432
            + ++ L+G+GDPSG GEGFSFL R A+ + S +              ++K+TGT  DLR+LTM Q+A+   + G+P+  + TLKRWDRVH+I++L+  A ++ V D     RF R ++   +  K +Y+     IW RQ A L
Sbjct:  829 TGMMKLTGLGDPSGMGEGFSFL-READSKPSKSVG-----NAALNSQIKKITGTENDLRKLTMKQMAALLRSYGMPQKKIDTLKRWDRVHVIRDLSTKAASDGVGDG--LERFARGEKMKLSEQKQMYQDRVQVIWKRQLAML 963
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: H3GM70_PHYRM (Bromo domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM70_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 4.730e-19
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:    4 SALLMLSGVGDPSGCGEGFSFLLRPAEQRKS---------LTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSAT 441
            S +L L G+GDP+G GEGFSF+  P  + K             S T +E T  Q++V  VTGT  DLR+L M +       +G+    +K L+RWDR+HM++EL+  A A  V      ++F R  R S +  +  Y+  C  I++RQ   LS+T
Sbjct:  887 SGMLQLGGIGDPTGRGEGFSFVRVPQSRAKKKDGEEDAAPTAESKTSAETTAMQKAVAAVTGTTADLRKLKMKEAGDVLRNLGLADADIKKLRRWDRIHMVRELSSRATAHGVAGS--LSKFARGARKSLSAQQQEYRKKCDVIYERQMDVLSST 1039
[Close]
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Match: K0T8U3_THAOC (Bromo domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8U3_THAOC)

HSP 1 Score: 99.0 bits (245), Expect = 6.310e-19
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:   13 LMLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGTNGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENVKDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATAEDVLDFVSESK 477
            + L+G+GDPSG GE +SFL     +    +A++  +        ++K+TGT  DLR+LTM Q+AS  ++  +P   ++ LKRWDRVH+I++L+    ++ + D+    RF R ++   +  +  YK    EIW RQ AAL+AT  D      E K
Sbjct:  926 MKLTGIGDPSGRGEAYSFLREEGGRGSKSSAAVDGA----LNAQIKKITGTENDLRKLTMKQMASLLQSYNVPSKDIEKLKRWDRVHVIRDLSTKNASDGMGDE--MDRFARTEKTRLSDQRSNYKERIQEIWRRQTAALTATDIDAAAVGMEGK 1074
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10247.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVI6_9PHAE1.370e-10161.77Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIW7_ECTSI8.020e-10066.76Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZI20_9STRA1.110e-2644.76DUF3591 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S2VAC4_9STRA2.680e-2138.89Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A2D4C5L0_PYTIN1.390e-1934.08Transcription initiation factor TFIID subunit 1 pu... [more]
B7FQ37_PHATC1.900e-1939.58Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4AWQ8_9STRA2.390e-1940.27Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5JFQ5_FISSO2.550e-1939.16Transcription initiation factor TFIID subunit 1 n=... [more]
H3GM70_PHYRM4.730e-1936.77Bromo domain-containing protein n=1 Tax=Phytophtho... [more]
K0T8U3_THAOC6.310e-1936.13Bromo domain-containing protein (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10247contigH-paniculata_contig10247:453..8438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score331.6
Seed ortholog evalue4.2e-88
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons7
Model size1044
Cds size1029
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10247.170.1prot_H-paniculata_contig10247.170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10247 468..8438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.2209237-UTR-H-paniculata_contig10247:452..4671622928729.2209237-UTR-H-paniculata_contig10247:452..467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10247 453..467 +
1691480597.1908388-UTR-H-paniculata_contig10247:452..4671691480597.1908388-UTR-H-paniculata_contig10247:452..467Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10247 453..467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.2357333-CDS-H-paniculata_contig10247:467..6311622928729.2357333-CDS-H-paniculata_contig10247:467..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 468..631 +
1691480597.1997592-CDS-H-paniculata_contig10247:467..6311691480597.1997592-CDS-H-paniculata_contig10247:467..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 468..631 +
1622928729.2549071-CDS-H-paniculata_contig10247:1269..13901622928729.2549071-CDS-H-paniculata_contig10247:1269..1390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 1270..1390 +
1691480597.2070956-CDS-H-paniculata_contig10247:1269..13901691480597.2070956-CDS-H-paniculata_contig10247:1269..1390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 1270..1390 +
1622928729.2693481-CDS-H-paniculata_contig10247:4480..45721622928729.2693481-CDS-H-paniculata_contig10247:4480..4572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 4481..4572 +
1691480597.21853-CDS-H-paniculata_contig10247:4480..45721691480597.21853-CDS-H-paniculata_contig10247:4480..4572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 4481..4572 +
1622928729.2864823-CDS-H-paniculata_contig10247:5885..59601622928729.2864823-CDS-H-paniculata_contig10247:5885..5960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 5886..5960 +
1691480597.2264082-CDS-H-paniculata_contig10247:5885..59601691480597.2264082-CDS-H-paniculata_contig10247:5885..5960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 5886..5960 +
1622928729.299445-CDS-H-paniculata_contig10247:6482..67381622928729.299445-CDS-H-paniculata_contig10247:6482..6738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 6483..6738 +
1691480597.2338195-CDS-H-paniculata_contig10247:6482..67381691480597.2338195-CDS-H-paniculata_contig10247:6482..6738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 6483..6738 +
1622928729.3164895-CDS-H-paniculata_contig10247:7909..80861622928729.3164895-CDS-H-paniculata_contig10247:7909..8086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 7910..8086 +
1691480597.2410557-CDS-H-paniculata_contig10247:7909..80861691480597.2410557-CDS-H-paniculata_contig10247:7909..8086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 7910..8086 +
1622928729.3401055-CDS-H-paniculata_contig10247:8294..84381622928729.3401055-CDS-H-paniculata_contig10247:8294..8438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 8295..8438 +
1691480597.2495108-CDS-H-paniculata_contig10247:8294..84381691480597.2495108-CDS-H-paniculata_contig10247:8294..8438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10247 8295..8438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10247.170.1

>prot_H-paniculata_contig10247.170.1 ID=prot_H-paniculata_contig10247.170.1|Name=mRNA_H-paniculata_contig10247.170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MLSGVGDPSGCGEGFSFLLRPAEQRKSLTASLTPSEKTVAQRSVQKVTGT
NGDLRRLTMIQLASTCEAMGIPKDTVKTLKRWDRVHMIKELAGVAVAENV
KDQNIYARFVRKKRPSATVDKDLYKATCIEIWDRQAAALSATAEDVLDFV
SESKGSSGSGGGSSKKGKEKAAANAGSSDADPMEEDDSSGKEKAAGDTDK
DAKGSNDDDDDNDDEEDDDDEPAFDDDELNLSDLEETLEEGDGNADVFSG
QKTLGDLSEARKKDGEELDDERQLMMLQRELQGDRGNAARWGVGEDSMSG
SALFKPTPTVAEVRKAQTDELLVKLGGRAELPAQAVRRITRTI
back to top

mRNA from alignment at H-paniculata_contig10247:453..8438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10247.170.1 ID=mRNA_H-paniculata_contig10247.170.1|Name=mRNA_H-paniculata_contig10247.170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7986bp|location=Sequence derived from alignment at H-paniculata_contig10247:453..8438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCGCGCTTCTAATGCTAAGCGGAGTCGGGGACCCATCGGGATGCGG
AGAGGGCTTCAGCTTCCTCTTGAGGCCAGCCGAGCAGAGGAAATCGCTGA
CGGCTTCCCTCACGCCCAGCGAGAAGACGGTGGCGCAGCGGAGCGTTCAG
AAGGTCACGGGCACCAACGGAGATCTTCGGTAATGTATTGTTTGAAATGT
TGGATAGTAACGCTCGCCCCACACTTTTCTGTAGTTGACGAGCTGTAAGC
TGTTCGTCTTCGCAACTGCGGCTCGCTATTGTTATAAACATCAAAAATGC
CATATCTAGACTCTCGCCGAGAATATGACTTTTTAGTATTCCATAGGAAA
TAGTATGGATACGAAAAATATTTAGCTCATTTTTATTTTATTTTTATTTT
TTTCGAATTTTGTCATAGTAAACATATGTATTATTAGTTCCCAATCACGT
CCATGTTTTGGTCAAAATCAAGGAGTTTAAAAGTACATGGCGAGGCTCCT
GATCATATATATAAATTTAAACTGTAAACTATTTTATATAAGAGGGATCT
TGGCTGTCGCACAATTTTGGTCGTGATGACCGTGATGATGATCATTCATT
AGCATACTAATTTGTAAAAGTAGGCCACTTACCATGATCGACCAATTAAC
CGATTATGTACTATCAGCTTCCGCCGCAACCGTAACCTGTAACCTCTAAG
TGTTAAGTTGTAAGCTGTAAACTACAATAGCCGTCCTCGTTGTCGCACGT
CTTTTTACCGTGATGATGATGATGCATTAATATGTATGTATATATATATA
TATATATTCTCAAACAGGCGACTCACCATGATCCAGCTGGCGTCCACCTG
TGAGGCGATGGGCATTCCTAAGGATACGGTGAAGACGCTCAAGCGCTGGG
ACCGCGTACACATGATCAAGGAGCTGGCGGGTGTTGCGGTGAGTTTTCCT
GCTGCTACTGACTGGTTGCCTAATTGCGGAGGCGGCTCGTTGGTCTGTCG
TAGGAAAGGGTAAAGGGTCGCTCGACTTGGAAACGACTTCCTGTCTGTGA
GAGCTTTTTGTTTTCGAAATCATGTAGAACCAGCACAGCATGTGTGCGGG
GGCTTGAAGCCTCAGCGTGACAGTGGTGGTGATCTATGATTATCACTATT
TGTGATATGTCTATCTATATACATATAGATAGATATAGATATAGATAGGT
ATCTGTATCGGGCCATCATTCTTTAGCACGTTTTTGTTGAATGACTGACT
CTCCTCTCCGTTAGGAGCACGAAGGACATATTGTACATGAAATTATCGAG
ACCGTCTCAAATTATGGCGTTTCGGATCCCATCAGCCACTTTTAAAAAAT
TGGATGCCGTGGACACCCAAGATACGCCGAGCTTATAAGGGTCGTTGAGG
GCTTTGCATTTTGAAACGGAAAGTACACATCCCCCGGAACAAAGACGAAT
ACTTGGGAAAAAAATCTCGGAGCAAAATTTAGAAAATAGTCATCTCAAGC
TTCACTCTGAGCATATTTATTGTATAAGAGTGTCACCGGCCCACCACAAA
CCTACGCCCGAACGGGTAGGGTAGGGTAGGTCGTGAACTGAGCATGACTG
GAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCCCACACTGCCTACT
TGGTTCGGCCGAACCGGGGTGGCTGGCGCCTACCCTGCAGAGGAATAAAT
AACTCTGTTCTGTTAAAGGAACTGTAGAAATACTTTAGTAAAATACTTGA
GTATGGAAGCATCGATAAAGGTTTTTGGCTCAGTCTTCCGGAGGTTAAAA
AAAAAGAAGTATGTACACCCCTGGAGTGTCATGCAAGACTGCGGCGAATA
CCATCAAAGCGAATATAAACCAGAGGGCGAAAAAACGCTTAATTCTATGT
GCCATCCTGCATATTCTGGATCGTCTCGAGGGGGGGGGGGGGGGGGGCAA
TTGTTATACATTATTAGAGCCAGAACCGGTTCGCGGCAGTATTTTTACTC
TTTCACAACCGGGTCGTGGTCCGATCCGGTCCGGTCCGGTCTAACTAACT
CACCCCTCCAGCCGGTCGTCTGTTGGTTCGTTCTATCGATGAATCGGTGT
CGATACTGCACGACCCGAGCTAGATATCTGTATTGTGCTCGAGTATCTTC
GAATATCCGGGCGCATACGAGTATATGGAAAGGGCACCGCGCTGTGGTTG
GCAGTAAAATGACCCACGTACGCTATCTACATTTTATGGCCGTTTTTGAT
CTTATTTTAGACCTCCAGGAGGCCCAGGGCGAACCGCTTTCTGATACATG
TATCTTGGATGGTAACGCACATCCAGCTTTCGTACGCCAGGTCTATTGCA
ATGCCTGAGACATGTATCTTAGACAGTAACGCACAGCCAGCTCCCGAAGC
CTATCGATGTCTGGACTGACAAAGAGGATTTTACATGACTTCTGTATTAC
AGGTCCCGTTTAGGGAAGCAGATGTAAGTGTCAGGGATGGGGGGGGTGCT
TCCTCCTCCAGCCGGACACGGGCTCCGAACCCAGTAATCCGGCTGCACCA
AAATACAGACAGACCCGAACCAGACCAACAGGAACAGAATTACTCAACTG
TCAGATCTATTCCAAAAACATGCAAAACCGATATCCTAACATGGTGTCAT
AACAGTCAATCTCTCACCCAGTCCTTCATCCCAGATGGGAGAACGACACA
CTCGAACATGTCTCCCGTGAGTTTTTACCCGGACGAAGTGTTACGTGACT
CCACCGAGGCCGCTTAATGGTTGCTGCTCCTGCCGGTACGTGGTGGTGCT
GTCCTATTAACAGTGCAGGGACACAAGACAGCGTTACAGCACCCAGTCCC
AACAGGATGTCTTGAAAGATCGGGCTACTGACTGTCCCGATCACGTTGAA
TAGTCCATGGTTTACTTTTAGCACACGGTAGTAGAGATAGGCAATCGTAT
ACATACTGGCGTAGTGCATTGATTGTGGGCTAGACTTGTGGGAATGAAAA
CGCAGTTAATAAAAGGCGCCGTTATCGATGTATGTCACAAAGCTTGACAC
AAATTTTGCCGTTATGATGGAAAATATACCTTTGTGTGTTATCGCGAGTG
TTCGCGTTTCGTTTGCGCTCTGATTTACCCCCCCAAGAGAATGACGAATA
CAAAACACTTGCAAGCATTCACTATGAAAATAGATGGAAGATTTTTTTTT
TTTTTTTTTTGCTATGCTTTCATTTATTTGTACTTTTCAGGACTGTGAAG
ACACTCTCCAGTGTCGTTATTCATTGATCGAAAATCAACAATATTCCAAA
ATAATCTTGATTTTTCGATTATTCGGCAGCGTTAGGGTTTTCCAACGAAC
TGATCAGTGTGTGTGTGTGTGTGTGTGTGTATCAGCGACGTACACAAAAA
CGTTCAACGGACGGACTCGTTTCGGGAAAGGTTTCGAATAATAAATTATA
TATGTATATATATATATATATATATATACATATACTCGGAACAATAACAA
AAATTGGAGAAATGAAAAATTGGCACAGAAATAGCCACCAGTTGGGGCAT
AATATGTATCCAACGACCAAGAGTCGAAATTCAACCCTCGAGTATCGTCT
GTAGCCGTTTGTACAGTTTTCAGCGCTCACCTCAAGTTTTCACTCACCTG
GTTGGTGGTAGTCGGGGTCGTGTTTTGCGGATTGATTTTGGCAACGGGTA
CACATGCACATTATTATGCTAGTACATAGATATCAAAGCATGACAGTCAT
CGTCCAGTCGACGTCTGATATAATCAGAAGCATGACAGTCATGATCCAGT
CGACGTCTGATACAATCAGAATTGCAATTATTGTTTTCAAAACGTTGAAA
GTACTGTCTGTCTCACTGGCTGTACCGTTTTTGGGAGGTCACGTTTGAGT
TTTACTTATGTAGACGTGTACTATGGGATATAGATATCGCGATTCAGAAG
GCCACGCATGTCTGCTACATTTATTTCGTTTCGCTTTTCGTTTTTCGTTT
TTATTTTCTTCTCGTGGTCGTGATCAAGGTTGCCGAGAACGTTAAGGACC
AAAATATCTACGCGCGATTCGTCCGGAAAAAACGACCCAGCGCCACCGTG
GATAAAGATCTATACAAAGCGTGAGTGCGGTAGCGGTCTGTCTATCAGTT
GGTCGATTAGTTGGTTGGCCAGTCTGTACCTTCAACCATCCCTCCGTCGG
TTAAGAGGGATTTTCGCCACAGCGTACGTACGTACGTACGTACTCCATGA
CAGAATCGTTGTCAAGCTTATGCGAAAAATAATTTCCGTGCTGAAGTTCG
TAGAAGCACTCGTAAACTCTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTTTTAAAGCCATATTGTTTTCTTGTGGCAAGAGTTTGTTAA
TCACGCACTACCTGTTGTTGCGTTTAAGTGTCACTTTGTGCTGGTTACCA
TGATTCTGTGTAACTGACGGCACGTGTCTACGTAATGTGATAATCTAGTG
TGATGCCTCTAAAAAAACTAATTGCGCATGACCACATTGCAACATTCACT
GGCGCGCACCGGGAGTCACCCAGGACCCCCCCCCCTCGACCGTTGTCCGT
CGGGTGTTTGCTTGGGTGTGTTTGCTGGGTGTGCCCAGGAATTTGCGTAG
TTAATGCGTTTTCCTAACTGATTGATCTCGGTGAGACAGTGTTTTTTTAT
CCCGTATATGTATGAAGATCGGAGTTGGTGTTCCATTGAGTGGTGATTTG
CCCATGTTGTCAGCTCTTGCTTATGCGTGTGTTTTGCCTTGCCTGTCTGT
ATGTGTGCCTCTGCGACTTCCGACGTCGCGATTGGGTATGTCATCGATTG
GTGATTTTGCTCGTGTTGCGGGCTTTTTTTTCATGAATATATATATATAT
ATATTTTGTCTCGTCTGTCCTGCCTATTTTATGAGTTTTCGTTACTTTGA
TGTTTTACTGATAATTGCCCGTGGTTTGCCTTATCCTTTCTTTTTTTTTT
CTTATTTTTCTGTCCTCGGGCTTATGTGATGATAACTGCTGTGCGGTATT
GCGGAGTATCTCACACACGTAGGTTGTTGTGTCCGGTTACTGACTATGCT
ATACAGTACTCTCAGAGCGGCACGCCTGGGGTGGCTGGGGTGGTAGATGT
AGTCCTTGGCAATAGTCTGGTCTGGTCTATTGTATTAGCTATACATTGTT
ATACGTCAGGGACGGCCCTGGGTTGATGCAAGTCTAACAGCTGGTGGGGC
GGCAACACATTGCGTGTTTGCCACTCCTGGCTCAAACTGGGGCTACGTTA
CATAACCACGGGGATTGGGGATGGAACCGTCACTTTAGACAATGACTGTC
ACGTTCCGCAATCAACATCTCATCATAACACTTATCTCATCCTGTTATTT
TCGTGTCTGGTGTTTGTGATGGGTAATAATCAGGACGTGCATCGAGATCT
GGGACAGGCAAGCTGCAGCTCTGTCCGCGACGGCGGAGGACGTCCTCGAC
TTCGTCAGGTAAGCCAGGTTACGAGAAGAAAAGCCATGTCCCCTTTTGCA
GGAAGCGTACAATATTTCGGTAGTGGTCTGGGCCCAAAACACACGATTCA
AGAGTCGGCGCTCTGCCATGTGATGGTTATATGTGTTTGCCCTGCCCCCG
TCCCCCTCTCTTGTGTGTATTGCGTTGTGTTATGTTTTATTTTGTGGAGG
GGTTCGCCCCGCGCTTTATTTACATGAGGATATCACAAACGGTGTCTTAT
TGATTGATGATTTTTGCCCGTGTTGATCTTTCATTTCTCTATTTTTTTTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTATGTCTC
TGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTGTC
TCTCTTTGCCTCTCTCTCCCTCCTTCGCTTCTCTGTTTTGTTTTCGTGTT
TTTTTTGTATTCTATTTTCAATTTTCTGTCGACAAATCCATCGTAAATTT
CGATTTTGCTACAACAAACGAACGCAACAGTGAATCAAAAGGAAGCAGCG
GCAGCGGCGGCGGAAGCTCCAAGAAAGGCAAGGAAAAAGCCGCCGCAAAC
GCGGGATCGAGCGACGCGGACCCTATGGAGGAAGACGACAGCTCAGGTAA
GGAAAAGGCTGCCGGTGACACCGACAAGGACGCCAAGGGGAGCAACGACG
ACGACGACGACAACGATGATGAAGAGGACGATGATGACGAACCCGCATTC
GATGACGACGAGTTGAACTTGAGCGACCTGGAAGAGGTGAGGAGATGTGT
TTAGCTCGACCGCCTCTGTAAACCCTCTACCTGGTGGCATGCTAATGGGT
GGCATCCTAATCAGCTCTGTCGTTTGCCGTGCTTGTCTCTATCATGTTGG
ATCATGAACCAAAACAAAGCCTGGCGTTTGCTCGTTTTTACTCGTTTTAC
TGAATCCTATGAAAGAACACTCCATTCACCATGTGTGGTAGTTACGAAAT
GAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGTCCTTGAAAGGAGA
GGAGGAAACCTTTGCCCAACAATTACCCCGATATTCGGGTTCGTGTGTCA
GTTGCCCGAAGGTCCGACTAGACAACCTTGCGGCTGTCATGTGGGGAAGG
CACCCTGAGCGTTCGCCCGCCCTTTGCTCAGGGTAGTGTTGGACTCGCAC
CCCCTAAAACCCCCTCTGTTGTTCCCCTCAACTTGGCGCAGTACACGCGC
CGCCCTGCTCAGTGAGCTTCGGCCCTAGGATGACAAATGGTGTATTTATT
GCGTTCTCGCCTTGTCCAGCGATCTGAGAATTAACCAATTAACCCCTTGG
GGACGCGGTACTTTTTCGAAACAAAATGGCTGAACATTTACATCCGATTC
GTGTTGAAAAACCAATACTTTTGAGAGCGTTTCAAAGGAGTGCCCAAAAG
CAGATCCGCGATGGGTTGCGTCAGTGTTTTTTTGTTTTTTTTTCCCCATG
TAATTTATTCCACTTTTTTTTCTTTCTTTTTTTTCCGACACGGCTGTATC
ACGTAACTCTCAGCGCGACTTAGTCATGGTCGTTTGAACCTTATCCATGG
TTGAGACCTTTTACACATGCATTTAATTAATACGTACAATAGATCCTGAA
AAGATTTCAATGGTATTTAACTCCCCCCCCCCCTCCCCCCCCCTCCCATT
TTTTTTCAATTTTTTTTCCAACTTTTTTTGTTATGAATGTGGTTCATTCA
CTGCTGTATTATCCATGTTCCTGTAGGATATATTTTTTAATATATTATTG
ATCATTAGTACTAGTAGTAGTAGTGATTACATTTGCTTATTCTTTGCTCT
AATATTGACGAATTTACGCTGTATTATGTGACGTTGTTTTCGTTCTGAAA
CTGTGGTTTATCCACTAAATTGACATATTATTAATTCGACATGTTCAAAT
TTTTCAGACACTGGAGGAAGGCGACGGAAACGCAGACGTGTTCTCTGGAC
AAAAGACTCTAGGAGATCTGTCGGAGGCACGGAAAAAAGATGGCGAAGAA
CTCGACGACGAGCGACAGCTCATGATGCTGCAGAGGGAATTGCAGGGGGA
TCGTGGCAACGCCGCGCGTTGGGGTGTAGGCGAGGTAACTAAGCCCAACG
ACGGAGCAGTAGTGTTGGAGTTGAACCGTGAGGCATTGAGCTGACAGGGG
TGGTACGGGGGAGGAAGTGTAGTGTTCAAGTTGATGTTGGCACGAGTTTT
CGATATTTTGTTTCGCTGTTGATTTCTATTTCGTCTCCGCTTCTTGATTG
GAATTTTTTTTTTCGCTGTCTTGTCTCTTTTTTGTTTTTAAGGACAGCAT
GTCGGGATCCGCGCTCTTCAAACCAACGCCTACTGTCGCAGAGGTGCGGA
AAGCTCAGACTGACGAGCTGCTTGTGAAGCTGGGTGGACGGGCCGAACTG
CCTGCTCAGGCCGTCAGGCGCATCACGAGAACTATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10247:453..8438+

>mRNA_H-paniculata_contig10247.170.1 ID=mRNA_H-paniculata_contig10247.170.1|Name=mRNA_H-paniculata_contig10247.170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig10247:453..8438+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAAGCGGAGTCGGGGACCCATCGGGATGCGGAGAGGGCTTCAGCTT
CCTCTTGAGGCCAGCCGAGCAGAGGAAATCGCTGACGGCTTCCCTCACGC
CCAGCGAGAAGACGGTGGCGCAGCGGAGCGTTCAGAAGGTCACGGGCACC
AACGGAGATCTTCGATGCTAAGCGGAGTCGGGGACCCATCGGGATGCGGA
GAGGGCTTCAGCTTCCTCTTGAGGCCAGCCGAGCAGAGGAAATCGCTGAC
GGCTTCCCTCACGCCCAGCGAGAAGACGGTGGCGCAGCGGAGCGTTCAGA
AGGTCACGGGCACCAACGGAGATCTTCGGCGACTCACCATGATCCAGCTG
GCGTCCACCTGTGAGGCGATGGGCATTCCTAAGGATACGGTGAAGACGCT
CAAGCGCTGGGACCGCGTACACATGATCAAGGAGCTGGCGGGTGTTGCGG
CGACTCACCATGATCCAGCTGGCGTCCACCTGTGAGGCGATGGGCATTCC
TAAGGATACGGTGAAGACGCTCAAGCGCTGGGACCGCGTACACATGATCA
AGGAGCTGGCGGGTGTTGCGGTTGCCGAGAACGTTAAGGACCAAAATATC
TACGCGCGATTCGTCCGGAAAAAACGACCCAGCGCCACCGTGGATAAAGA
TCTATACAAAGCGTTGCCGAGAACGTTAAGGACCAAAATATCTACGCGCG
ATTCGTCCGGAAAAAACGACCCAGCGCCACCGTGGATAAAGATCTATACA
AAGCGACGTGCATCGAGATCTGGGACAGGCAAGCTGCAGCTCTGTCCGCG
ACGGCGGAGGACGTCCTCGACTTCGTCAGGACGTGCATCGAGATCTGGGA
CAGGCAAGCTGCAGCTCTGTCCGCGACGGCGGAGGACGTCCTCGACTTCG
TCAGTGAATCAAAAGGAAGCAGCGGCAGCGGCGGCGGAAGCTCCAAGAAA
GGCAAGGAAAAAGCCGCCGCAAACGCGGGATCGAGCGACGCGGACCCTAT
GGAGGAAGACGACAGCTCAGGTAAGGAAAAGGCTGCCGGTGACACCGACA
AGGACGCCAAGGGGAGCAACGACGACGACGACGACAACGATGATGAAGAG
GACGATGATGACGAACCCGCATTCGATGACGACGAGTTGAACTTGAGCGA
CCTGGAAGAGTGAATCAAAAGGAAGCAGCGGCAGCGGCGGCGGAAGCTCC
AAGAAAGGCAAGGAAAAAGCCGCCGCAAACGCGGGATCGAGCGACGCGGA
CCCTATGGAGGAAGACGACAGCTCAGGTAAGGAAAAGGCTGCCGGTGACA
CCGACAAGGACGCCAAGGGGAGCAACGACGACGACGACGACAACGATGAT
GAAGAGGACGATGATGACGAACCCGCATTCGATGACGACGAGTTGAACTT
GAGCGACCTGGAAGAGACACTGGAGGAAGGCGACGGAAACGCAGACGTGT
TCTCTGGACAAAAGACTCTAGGAGATCTGTCGGAGGCACGGAAAAAAGAT
GGCGAAGAACTCGACGACGAGCGACAGCTCATGATGCTGCAGAGGGAATT
GCAGGGGGATCGTGGCAACGCCGCGCGTTGGGGTGTAGGCGAGACACTGG
AGGAAGGCGACGGAAACGCAGACGTGTTCTCTGGACAAAAGACTCTAGGA
GATCTGTCGGAGGCACGGAAAAAAGATGGCGAAGAACTCGACGACGAGCG
ACAGCTCATGATGCTGCAGAGGGAATTGCAGGGGGATCGTGGCAACGCCG
CGCGTTGGGGTGTAGGCGAGGACAGCATGTCGGGATCCGCGCTCTTCAAA
CCAACGCCTACTGTCGCAGAGGTGCGGAAAGCTCAGACTGACGAGCTGCT
TGTGAAGCTGGGTGGACGGGCCGAACTGCCTGCTCAGGCCGTCAGGCGCA
TCACGAGAACTATCGACAGCATGTCGGGATCCGCGCTCTTCAAACCAACG
CCTACTGTCGCAGAGGTGCGGAAAGCTCAGACTGACGAGCTGCTTGTGAA
GCTGGGTGGACGGGCCGAACTGCCTGCTCAGGCCGTCAGGCGCATCACGA
GAACTATC
back to top