mRNA_H-paniculata_contig10243.169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10243.169.1
Unique NamemRNA_H-paniculata_contig10243.169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10243.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10243contigH-paniculata_contig10243:6690..7197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size508
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.1477404-CDS-H-paniculata_contig10243:6689..69951622928729.1477404-CDS-H-paniculata_contig10243:6689..6995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10243 6690..6995 +
1691480597.174905-CDS-H-paniculata_contig10243:6689..69951691480597.174905-CDS-H-paniculata_contig10243:6689..6995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10243 6690..6995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928729.162064-UTR-H-paniculata_contig10243:6995..71971622928729.162064-UTR-H-paniculata_contig10243:6995..7197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10243 6996..7197 +
1691480597.1828463-UTR-H-paniculata_contig10243:6995..71971691480597.1828463-UTR-H-paniculata_contig10243:6995..7197Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10243 6996..7197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10243.169.1prot_H-paniculata_contig10243.169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10243 6690..6995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10243.169.1

>prot_H-paniculata_contig10243.169.1 ID=prot_H-paniculata_contig10243.169.1|Name=mRNA_H-paniculata_contig10243.169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
LSFRLRCTFLLPTCTAQVSNVTAQHSSTVHPQTLFIAQSRPFLHRQRISG
CFHQYRSESKATFHKTCKGLPSCSPPALLSTIGPRQTVSPKLPIIAHTAC
P*
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mRNA from alignment at H-paniculata_contig10243:6690..7197+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10243.169.1 ID=mRNA_H-paniculata_contig10243.169.1|Name=mRNA_H-paniculata_contig10243.169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=508bp|location=Sequence derived from alignment at H-paniculata_contig10243:6690..7197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCTTTTCGTTTGCGATGTACATTCTTACTGCCGACATGTACAGCACA
AGTGAGCAATGTAACAGCACAGCACAGTAGTACAGTACACCCACAAACCC
TCTTCATCGCACAATCACGGCCTTTCCTGCATCGTCAACGCATCTCAGGG
TGCTTCCATCAATACCGTTCTGAATCAAAAGCGACATTCCACAAAACATG
CAAGGGACTGCCATCCTGCTCTCCACCCGCTCTGCTATCCACCATTGGTC
CACGCCAAACCGTTTCACCCAAACTGCCTATTATTGCCCATACAGCATGT
CCTTGAAACTACATAACCAACCGAGCCTGAAATGCCGACAACTATGATGC
TGGCATGTGTCCTGTTTTTTTTTTACCCCCCGAAGGCTGAGGCAAAAACC
TTTTCCGCTGCTTCCACATTCAGGTGTCCTCCCAAACATGTCTACATTTC
CTTTAACAGAACAGAGTTATTTATTCCTCTGCGGGGATGTGTCCTGGTTC
TTGTCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig10243:6690..7197+

>mRNA_H-paniculata_contig10243.169.1 ID=mRNA_H-paniculata_contig10243.169.1|Name=mRNA_H-paniculata_contig10243.169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig10243:6690..7197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCTTTTCGTTTGCGATGTACATTCTTACTGCCGACATGTACAGCACA
AGTGAGCAATGTAACAGCACAGCACAGTAGTACAGTACACCCACAAACCC
TCTTCATCGCACAATCACGGCCTTTCCTGCATCGTCAACGCATCTCAGGG
TGCTTCCATCAATACCGTTCTGAATCAAAAGCGACATTCCACAAAACATG
CAAGGGACTGCCATCCTGCTCTCCACCCGCTCTGCTATCCACCATTGGTC
CACGCCAAACCGTTTCACCCAAACTGCCTATTATTGCCCATACAGCATGT
CCTTGACTTTCTTTTCGTTTGCGATGTACATTCTTACTGCCGACATGTAC
AGCACAAGTGAGCAATGTAACAGCACAGCACAGTAGTACAGTACACCCAC
AAACCCTCTTCATCGCACAATCACGGCCTTTCCTGCATCGTCAACGCATC
TCAGGGTGCTTCCATCAATACCGTTCTGAATCAAAAGCGACATTCCACAA
AACATGCAAGGGACTGCCATCCTGCTCTCCACCCGCTCTGCTATCCACCA
TTGGTCCACGCCAAACCGTTTCACCCAAACTGCCTATTATTGCCCATACA
GCATGTCCTTGA
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