mRNA_H-paniculata_contig1024.166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1024.166.1
Unique NamemRNA_H-paniculata_contig1024.166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1024.166.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.780e-32
Identity = 73/173 (42.20%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:  508 HS*RHSWRGNRGSVDNSVSKTKAASV-QRLQDLLEMAGYTEDGKRHVQAGPWGLGDRRSLDQFFEFTGVNLREMSHIGITGDRCGSGVEWVPTKAPPKAKEPAVPAGIEPGNASLRGEGGGGNLQHKQERGEKSGEFESWKTHGGTDPILEGPKWAEVTKRLEELGLEVWWGP 1023
            H    SWR N+  VD    K +     QRL +L+EM   +E+G+R VQ  PWGLGDRR+LD+F EFTGV+LR   HIG+TGDRCGSGVEWVP                              +L      GE++  F SW+   G DP+  GP+W+E+  +LE  G++VWW P
Sbjct:  323 HEQTTSWRSNK-KVDGDDGKDRQRLANQRLWNLMEMPLSSEEGRREVQGDPWGLGDRRTLDEFIEFTGVDLRNKEHIGVTGDRCGSGVEWVPY-----------------------------SLDDDSRDGEET--FVSWRRRKGLDPVAAGPRWSEIKGKLEASGVDVWWDP 463
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BLAST of mRNA_H-paniculata_contig1024.166.1 vs. uniprot
Match: D7FQK5_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.550e-7
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  508 HS*RHSWRGNRGSVDNSVSKTKAASVQRLQDLLEMAGYTEDGKRHVQAGPWGLGDRRSLDQFFEFTGV 711
            H+   SWR N+    +     +  + QRL +L+EM   +++G + VQ  PWGLGDRR+LD+F EFTG 
Sbjct:  363 HAQTTSWRSNKKVEGDGGKDRQRLANQRLWNLMEMPRSSKEGSKEVQGDPWGLGDRRTLDEFIEFTGT 430
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BLAST of mRNA_H-paniculata_contig1024.166.1 vs. uniprot
Match: A0A7S1BNJ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNJ0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.350e-5
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:  520 HSWRGNRGSVDNSVSKTKAASVQRLQDLLEMA-----GYTEDGKRHVQAGPWGLGDRRSLDQFFEFTGVNLREMSHIGITGDRCGSGVEWVPTKAPPK 798
            H+WR          S   A S  RL  L+++       YT++ K+ ++   +GLGDRRSLDQ  +F+G+NLR   ++G   ++CG+ ++WVP    P+
Sbjct:  394 HTWR----------SIGSAGSEWRLNSLIDLGIKEDRNYTKETKK-LKKSKYGLGDRRSLDQLIDFSGINLRYRRNLGT--NKCGN-LQWVPFSEHPR 477
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1024.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6U7_9PHAE1.780e-3242.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQK5_ECTSI1.550e-742.65[Skp1-protein]-hydroxyproline N-acetylglucosaminyl... [more]
A0A7S1BNJ0_9STRA4.350e-534.69Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1024contigH-paniculata_contig1024:3125..6191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1234
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1024.166.1prot_H-paniculata_contig1024.166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1024 3734..6191 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.7182581-UTR-H-paniculata_contig1024:3124..37331622928728.7182581-UTR-H-paniculata_contig1024:3124..3733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1024 3125..3733 +
1691480596.968277-UTR-H-paniculata_contig1024:3124..37331691480596.968277-UTR-H-paniculata_contig1024:3124..3733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1024 3125..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.7328236-CDS-H-paniculata_contig1024:3733..38321622928728.7328236-CDS-H-paniculata_contig1024:3733..3832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 3734..3832 +
1691480596.9783757-CDS-H-paniculata_contig1024:3733..38321691480596.9783757-CDS-H-paniculata_contig1024:3733..3832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 3734..3832 +
1622928728.7463117-CDS-H-paniculata_contig1024:5666..61911622928728.7463117-CDS-H-paniculata_contig1024:5666..6191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 5667..6191 +
1691480596.986342-CDS-H-paniculata_contig1024:5666..61911691480596.986342-CDS-H-paniculata_contig1024:5666..6191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 5667..6191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1024.166.1

>prot_H-paniculata_contig1024.166.1 ID=prot_H-paniculata_contig1024.166.1|Name=mRNA_H-paniculata_contig1024.166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MAGYTEDGKRHVQAGPWGLGDRRSLDQFFEFTGVNLREMSHIGITGDRCG
SGVEWVPTKAPPKAKEPAVPAGIEPGNASLRGEGGGGNLQHKQERGEKSG
EFESWKTHGGTDPILEGPKWAEVTKRLEELGLEVWWGPFYKKEREVLPVR
DPPHLNEVELALKKYAADANEEAGVGMPLVEVQVSVGDEEAGLGDEEMML
GGGGGRAG
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mRNA from alignment at H-paniculata_contig1024:3125..6191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1024.166.1 ID=mRNA_H-paniculata_contig1024.166.1|Name=mRNA_H-paniculata_contig1024.166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3067bp|location=Sequence derived from alignment at H-paniculata_contig1024:3125..6191+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCTATCTATCTGGATGCGGTACTATTTACCGAAACATGGTGGAAGATC
GAGATCAACATGAGATTTGTGTTGAAAGTTCCAAAGGGTTGCCCAAAAGC
ATTATCTGGGTCCCCAAAAACCGATGTACGATGAGTTGCCCCCCCTGATC
TGCTATAACCTATTTCCTATAATATAAAGAAGAAGTACCCCAAAACAGAT
CTCAGAGAGCTGCGCCTCGAAAGGGTTGAAATCGTAACTCCTTTTTGTTT
GATAGTATGGGAATAAATGTGATGGTCGTGGTGGTCGTCCCCGTTGTTTC
GGAACATATTTTCAATTCTATATTCAACTAACTAACTCCTGAAAGAATAA
TCTTCAATCTTCATGCGAACGCAGCGAGCTTGAAGGATAATAACAAAGAA
GGCACCTAACAGTAATGTTTTTAACCGCGCCTGTCATGCATCTGTCGATC
TTATCTATTCTCACCTATTTTGGACTCACTTCTGTGTGTTTTGGCAACCA
ACATGTGCACTCATAGAGGCATTCGTGGAGAGGGAATAGGGGAAGCGTGG
ATAACAGCGTTTCGAAGACAAAAGCCGCCTCGGTGCAGCGGCTGCAGGAT
CTATTGGAGATGGCCGGTTATACGGAGGACGGGAAGCGGCATGTCCAGGC
GGGGCCGTGGGGCTTGGGCGACCGACGCAGTCTGGACCAGTTCTTCGAGT
TCACAGGGGTATGTTTACTACTAGAGAGATTGAGTATGAAGTAAAAGTCT
CTGCATGTTTGTGTGTGTGTGTGTTAGTGTTTTTTTCCCCGATGCGAGCT
TTTTTTTTCAAGTTTTTGTGTTTTGTTTTGAATTACAAGCAGAGTTAAAG
AGAGCTCTATTTTGCGGAGATCGGAAATCGGGGCTTGATACTTGATATCT
TGCCGTGGGCTTAAGCTCCTCCTGTCACAACGCTTCCGAGTGGTGCATAC
AGAGGGTGTACACTCTGGGGTGGAAAGGAAAGAGAGATCTAAATTGAGAG
CGAAAGCAGGAATCGGTTACCGAAAATTCGATTTGGCGCTGTATGACTCA
CATACAGCTGTAGTGACCTGTTAGCTCCAGGGTCCCGGATGTCCCCCTTC
GAAATGGGTTCATTTTAAAAACCCAGTCACGTTTCGTAAAACTTTCGACT
TTTAATAGTAAAAGGAATAATTTCCTCTGTGCCGTGAGCATGGTCGGTTG
AGTTTATAGAGGCATGTAACTATGTCCAATTTTGTTTGTTTGTGGGGTTT
ATTGAAGATGTTTCACAGAAATTGGCGTAATCCATCGGGAGCGCGCGCGG
CGCAAAAAAACATTTCGGTCGAAAAAAGGCCGTATTTTTTGCCCCTTGAT
AAAGATGACGATGTTGGCGGCGATCTCAACTGCTTTTTCCCTGGGCAATC
TACGTTAGCCCGAGAGAGACGCTATCGCGTAACGGCAACCTGGGGGAAGC
TCTCCCCCTTTGCCACGTGGAGGAGCTGCTGTAGTGGTTCGGCGACAAAC
CGGCCAAAAATGACCAAAAACGGGTAATCTTTGACCCAGAATTCTGTCGG
AATCAATTATCGGAATCAGAACTCGGCGTGTTCTTTGAGAATCGTCTTCT
TTGTTCTAGCTTTCCAACGATTCCATCCGTAGCCTTCGTAAAGTTCCAGA
GCTGGAGACATAATCCGCCAAACTCAACCGAAGTTACTTTTGGCATAGAG
GAGGTATACTTTAATCTCGAGAACTCGGTACAGGTGGACTGGGATTCGGG
ACCTGGAGCTAGCTCACTGTTCGCCGTACAGGACAAGATCGAAATTTTAC
AGACAGTCGTTTTCGCAAAATACTTGAATTCATGATTAACCTTTAGTTCA
TGTCTCTCAACGGTACTAGACTTGCTTGGTAGCCTGCAAGTCGTTGTCTA
ACTGTTTACTATTGCTTTTTTTTTTAGTGGATGTTCGGGGAGGGGGGAGG
AGTACAGATCTGGTACATAGTAGTGTATTTTTTTCACAAGCGACGGCGAA
ACACGTTACACACGTTACCAACGCTGGCTCGCGTTACGTCTGTTTTCTTG
TTTGGTGAGGTCGGTCGTGTCATCATCTTGTCCCGTTTTTTTGCGAAGCT
CGTGCTTGTCCGGCAATGATCAAAATAGGTGAAACGGTATGGATGCAGGA
GTAGGTACAGTCATTCAATGAACATGGTTGGACAGTGAAATGATTTTCTA
TCTCCCACACAAAGGTCCCCTCTTCGTCCGGAGGGGGAAAGGAGGGGGCT
GTTGAGCTGAACGAACTATCCAACCCAGCATCGACCTTTTCGTGCGTCAC
CACCTACTTCTGCACCTATATCATTGGTCATTTTCCAAACAAATATCAGC
AAGCGCCGCTACCGCTGCCGCCGCGTAAATCTCTCTTGACTAAAAGTTAA
TCATCAATATGAAGGAGGGGAAAATTATGTACTTTGGATTGTGTTCAACT
CATTTTGAAAGAGTTTTTTTTTATTTTTATGTGTTGATTTTGATGCCATC
ACTTGAACGTGATTGATTGGCTTTTGATCTTGGGACTTTCAGGTGAATCT
CCGAGAAATGTCGCACATAGGGATAACGGGAGACCGGTGTGGGAGCGGGG
TAGAATGGGTGCCAACGAAGGCGCCCCCCAAGGCGAAAGAACCCGCCGTC
CCCGCCGGTATAGAACCGGGCAACGCGAGTCTCCGTGGCGAGGGCGGGGG
CGGAAACCTCCAACATAAGCAAGAAAGAGGAGAAAAGAGCGGCGAGTTCG
AGTCGTGGAAAACGCACGGAGGCACTGATCCCATTTTGGAAGGGCCGAAG
TGGGCGGAAGTAACAAAGCGCCTCGAAGAGTTGGGTCTTGAGGTCTGGTG
GGGTCCCTTCTACAAGAAAGAGAGGGAGGTGTTGCCCGTCCGGGACCCTC
CGCACCTGAACGAGGTGGAGCTGGCGCTCAAAAAGTACGCTGCGGATGCC
AATGAGGAGGCCGGGGTCGGCATGCCATTGGTAGAAGTTCAGGTTTCTGT
GGGCGATGAAGAAGCAGGGCTGGGCGATGAAGAGATGATGTTGGGGGGTG
GTGGTGGTCGTGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1024:3125..6191+

>mRNA_H-paniculata_contig1024.166.1 ID=mRNA_H-paniculata_contig1024.166.1|Name=mRNA_H-paniculata_contig1024.166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig1024:3125..6191+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGGTTATACGGAGGACGGGAAGCGGCATGTCCAGGCGGGGCCGTG
GGGCTTGGGCGACCGACGCAGTCTGGACCAGTTCTTCGAGTTCACAGGGA
TGGCCGGTTATACGGAGGACGGGAAGCGGCATGTCCAGGCGGGGCCGTGG
GGCTTGGGCGACCGACGCAGTCTGGACCAGTTCTTCGAGTTCACAGGGGT
GAATCTCCGAGAAATGTCGCACATAGGGATAACGGGAGACCGGTGTGGGA
GCGGGGTAGAATGGGTGCCAACGAAGGCGCCCCCCAAGGCGAAAGAACCC
GCCGTCCCCGCCGGTATAGAACCGGGCAACGCGAGTCTCCGTGGCGAGGG
CGGGGGCGGAAACCTCCAACATAAGCAAGAAAGAGGAGAAAAGAGCGGCG
AGTTCGAGTCGTGGAAAACGCACGGAGGCACTGATCCCATTTTGGAAGGG
CCGAAGTGGGCGGAAGTAACAAAGCGCCTCGAAGAGTTGGGTCTTGAGGT
CTGGTGGGGTCCCTTCTACAAGAAAGAGAGGGAGGTGTTGCCCGTCCGGG
ACCCTCCGCACCTGAACGAGGTGGAGCTGGCGCTCAAAAAGTACGCTGCG
GATGCCAATGAGGAGGCCGGGGTCGGCATGCCATTGGTAGAAGTTCAGGT
TTCTGTGGGCGATGAAGAAGCAGGGCTGGGCGATGAAGAGATGATGTTGG
GGGGTGGTGGTGGTCGTGCGGGAGTGAATCTCCGAGAAATGTCGCACATA
GGGATAACGGGAGACCGGTGTGGGAGCGGGGTAGAATGGGTGCCAACGAA
GGCGCCCCCCAAGGCGAAAGAACCCGCCGTCCCCGCCGGTATAGAACCGG
GCAACGCGAGTCTCCGTGGCGAGGGCGGGGGCGGAAACCTCCAACATAAG
CAAGAAAGAGGAGAAAAGAGCGGCGAGTTCGAGTCGTGGAAAACGCACGG
AGGCACTGATCCCATTTTGGAAGGGCCGAAGTGGGCGGAAGTAACAAAGC
GCCTCGAAGAGTTGGGTCTTGAGGTCTGGTGGGGTCCCTTCTACAAGAAA
GAGAGGGAGGTGTTGCCCGTCCGGGACCCTCCGCACCTGAACGAGGTGGA
GCTGGCGCTCAAAAAGTACGCTGCGGATGCCAATGAGGAGGCCGGGGTCG
GCATGCCATTGGTAGAAGTTCAGGTTTCTGTGGGCGATGAAGAAGCAGGG
CTGGGCGATGAAGAGATGATGTTGGGGGGTGGTGGTGGTCGTGCGGGA
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