mRNA_H-paniculata_contig1024.165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1024.165.1
Unique NamemRNA_H-paniculata_contig1024.165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.310e-27
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240
            YGVLSTYVQ++  +    S   EV+HLCEV F     PRN+QARAIH MTEPK+TTTWGAGYSFSKCHAER VPYDP LD+
Sbjct:  206 YGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQARAIHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDR 286          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: D7FQK5_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.570e-25
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240
            YGVLSTYVQ++  +    S   EV+HLCEV F     PRN+QA  IH MTEPK+TTTWGAGYSFSKCHAER VPYDP LD+
Sbjct:  248 YGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQA--IHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDR 326          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A836CB83_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB83_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.180e-19
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240
            + VLSTYVQ+  D+        E SHLCE+  +     RNE A+A+ LMT+PK+TTTW AG SFSKCH+ R+VPYDPYL Q
Sbjct:  170 HAVLSTYVQDVEDLGVNVGGHFETSHLCEI--LWEEQVRNEGAKALRLMTQPKLTTTWAAGLSFSKCHSMRAVPYDPYLPQ 248          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: I2CPM0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPM0_NANGC)

HSP 1 Score: 83.2 bits (204), Expect = 2.700e-17
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMDKPSPDR-EVSHLCEVKFI-GPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYL 234
            + VLSTYV    +      +R EV H+C V F  G  + RNEQA+++ ++T PKMT+TW AG++F+KCHA++  PYDP+L
Sbjct:   16 HAVLSTYVPRVEERGLNVNERWEVPHICRVFFTPGEHMVRNEQAKSVMMLTRPKMTSTWAAGFAFNKCHADKRTPYDPHL 95          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A8J2SM54_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM54_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.070e-17
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMDKPSPDR------EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPY 231
            Y VLSTYV ++ +++     R      EV HLC +++   G  RN QA+A  L+ +PK+TT W AG SFS+CHAER+VPYDPY
Sbjct:  202 YAVLSTYVADSTNLNDDGSMRNVNGVWEVPHLCSIQWEN-GHVRNMQAKAARLLKKPKLTTLWAAGLSFSRCHAERTVPYDPY 283          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: R1ERS5_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ERS5_EMIHU)

HSP 1 Score: 80.5 bits (197), Expect = 6.860e-16
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMDKPSPDR-EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYL 234
            Y +L+ Y  N   + K      E+ H C  + + PG+ RNEQA A   +T P MT  WGAG SFS+CHAER VP DP+L
Sbjct:  182 YAILTAYPPNAMQLGKNVNGHWEMPHFCRARVVSPGIVRNEQASAAAGLTRPLMTALWGAGLSFSRCHAERRVPADPHL 260          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: F0Y7S9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7S9_AURAN)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-15
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMDKPSPDR------EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPY 231
            Y VLSTYV +   +++   ++      EV HLC + +   G  RN QA+A  L+ +PK+TT W AG SFS+CHAER+VPYDP+
Sbjct:  192 YAVLSTYVADANQINEDGSEKNINNVWEVPHLCSILWQD-GHVRNMQAKAARLLEKPKLTTLWAAGLSFSRCHAERAVPYDPH 273          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S3LZG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZG3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-15
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 YGVLSTYVQNTADMDKPSPDR-------EVSHLCEVKFIGP-GLPRNEQARAIHLMTEPKMTT-TWGAGYSFSKCHAERSVPYDPY 231
            Y VLSTYV ++A +++  P         EV HLC V F G  G+ RN   + +  M +PK+T   WGAG SFSKCHAER  PYDP+
Sbjct:   46 YAVLSTYVADSATLNENMPGHKGTNGIYEVPHLCMVTFSGSYGMVRNWGTKCLRNMNKPKITNMVWGAGLSFSKCHAERKAPYDPH 131          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S2TJQ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJQ0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 YGVLSTYVQNTA-DMDKPS------PDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLD 237
            YGVLSTYV N   D+ K        P  E+  +C+    G G+ RN QA A + +  P ++ TW AG+SF+KCH ER VP DPYL+
Sbjct:   38 YGVLSTYVGNVKQDLSKSGHVLIGHPHYEIPFICKTIVGGHGVVRNSQATAAYCLPRPHLSFTWAAGWSFAKCHFERVVPNDPYLE 123          
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S0H294_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H294_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 1.260e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 YGVLSTYVQNTA-DMDKPS------PDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLD 237
            YGVLSTYV N   D+ +        P+ E+  +C+    G G+ RN QA   + + +P ++ TW AG+SF+KCH ER++P DPYL+
Sbjct:  202 YGVLSTYVGNVKQDLSRKGEVLIGHPNYEIPFICKTIVGGHGVVRNSQATGAYCLPKPHLSYTWAAGWSFAKCHFERNIPNDPYLE 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6U7_9PHAE1.310e-2769.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQK5_ECTSI6.570e-2566.67[Skp1-protein]-hydroxyproline N-acetylglucosaminyl... [more]
A0A836CB83_9STRA3.180e-1955.56GlcNAc-domain-containing protein n=1 Tax=Tribonema... [more]
I2CPM0_NANGC2.700e-1747.50Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A8J2SM54_9STRA7.070e-1749.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
R1ERS5_EMIHU6.860e-1646.84Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
F0Y7S9_AURAN1.610e-1546.99Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3LZG3_9STRA2.930e-1547.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2TJQ0_9EUKA1.090e-1445.35Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0H294_9EUKA1.260e-1441.86Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1024contigH-paniculata_contig1024:410..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D7FQK5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase (GlcNAc)
EggNOG OGs2CXJN@1,2RY14@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.7825873-CDS-H-paniculata_contig1024:409..5381622928728.7825873-CDS-H-paniculata_contig1024:409..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 410..538 +
1691480596.9954858-CDS-H-paniculata_contig1024:409..5381691480596.9954858-CDS-H-paniculata_contig1024:409..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 410..538 +
1622928728.794166-CDS-H-paniculata_contig1024:1046..11751622928728.794166-CDS-H-paniculata_contig1024:1046..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 1047..1175 +
1691480597.0073102-CDS-H-paniculata_contig1024:1046..11751691480597.0073102-CDS-H-paniculata_contig1024:1046..1175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1024 1047..1175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1024.165.1prot_H-paniculata_contig1024.165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1024 410..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1024.165.1

>prot_H-paniculata_contig1024.165.1 ID=prot_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
YGVLSTYVQNTADMDKPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTE
PKMTTTWGAGYSFSKCHAERSVPYDPYLDQASLDA*
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mRNA from alignment at H-paniculata_contig1024:410..1175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1024.165.1 ID=mRNA_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at H-paniculata_contig1024:410..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGAGTTCTGAGTACGTACGTGCAAAATACAGCAGATATGGATAAACC GTCCCCAGATCGGGAGGTTTCTCACCTTTGCGAGGTGAAGTTCATCGGCC CGGGCCTACCGAGGAACGAACAAGCCAGGGTGCGTGTCGTTGACGAGTCA GGTTCACGCCTCGAAGTTCATCAGAAATGCGGGCTTGGGTAACCTCCCTT GAGAATGCCGTCTAAGATTATTCGGTTTGTGGATAAAACATAGTAAGTAA TTCAGCAAGTTGAAGATGCTGGGCGTAGCTGCATGTTGTTTTACGGTTTA TTGTCATGTTTTTTACAGTAATTTTTTATGCATATCTGGTTCTGCTTAAG AGTTGCTCTTTACGGGTATTCATTCCCCTTAACGTCTTCTCACCCCCTCG TCCCCTCGTCCCCTGTCCCCTGTCCCCTGTCCCGACTCGAGGAAAAGGAC AGTCGCAATTTGATTGCACTTGTCATCGGATATATTGTTTTCCGGAACAT CACACATAGGCACACGATAGATGAAAGCCAATTTATAGAGTTGTACTTGA AAAAATAATATATATATATATTGTTTTTGTCCCGTCTTGGGGGATTTTTT TTTAGTAATAGTGGCAACTCTTTGATTTGATTCGCAGGCGATCCATTTGA TGACGGAGCCCAAGATGACGACAACGTGGGGGGCCGGGTATTCCTTCTCC AAGTGTCACGCCGAGCGCTCTGTGCCGTACGACCCTTACCTCGACCAGGC GAGTCTTGATGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1024:410..1175+

>mRNA_H-paniculata_contig1024.165.1 ID=mRNA_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig1024:410..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGGAGTTCTGAGTACGTACGTGCAAAATACAGCAGATATGGATAAACC
GTCCCCAGATCGGGAGGTTTCTCACCTTTGCGAGGTGAAGTTCATCGGCC
CGGGCCTACCGAGGAACGAACAAGCCAGGTACGGAGTTCTGAGTACGTAC
GTGCAAAATACAGCAGATATGGATAAACCGTCCCCAGATCGGGAGGTTTC
TCACCTTTGCGAGGTGAAGTTCATCGGCCCGGGCCTACCGAGGAACGAAC
AAGCCAGGGCGATCCATTTGATGACGGAGCCCAAGATGACGACAACGTGG
GGGGCCGGGTATTCCTTCTCCAAGTGTCACGCCGAGCGCTCTGTGCCGTA
CGACCCTTACCTCGACCAGGCGAGTCTTGATGCTTGAGCGATCCATTTGA
TGACGGAGCCCAAGATGACGACAACGTGGGGGGCCGGGTATTCCTTCTCC
AAGTGTCACGCCGAGCGCTCTGTGCCGTACGACCCTTACCTCGACCAGGC
GAGTCTTGATGCTTGA
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