mRNA_H-paniculata_contig1024.165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A6H5L6U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U7_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.310e-27 Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240 YGVLSTYVQ++ + S EV+HLCEV F PRN+QARAIH MTEPK+TTTWGAGYSFSKCHAER VPYDP LD+ Sbjct: 206 YGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQARAIHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDR 286
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: D7FQK5_ECTSI ([Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 6.570e-25 Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240 YGVLSTYVQ++ + S EV+HLCEV F PRN+QA IH MTEPK+TTTWGAGYSFSKCHAER VPYDP LD+ Sbjct: 248 YGVLSTYVQDSRVLGVNVSKKWEVAHLCEVYFSPSQQPRNQQA--IHEMTEPKLTTTWGAGYSFSKCHAERRVPYDPNLDR 326
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A836CB83_9STRA (GlcNAc-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB83_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.180e-19 Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMD-KPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLDQ 240 + VLSTYVQ+ D+ E SHLCE+ + RNE A+A+ LMT+PK+TTTW AG SFSKCH+ R+VPYDPYL Q Sbjct: 170 HAVLSTYVQDVEDLGVNVGGHFETSHLCEI--LWEEQVRNEGAKALRLMTQPKLTTTWAAGLSFSKCHSMRAVPYDPYLPQ 248
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: I2CPM0_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPM0_NANGC) HSP 1 Score: 83.2 bits (204), Expect = 2.700e-17 Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMDKPSPDR-EVSHLCEVKFI-GPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYL 234 + VLSTYV + +R EV H+C V F G + RNEQA+++ ++T PKMT+TW AG++F+KCHA++ PYDP+L Sbjct: 16 HAVLSTYVPRVEERGLNVNERWEVPHICRVFFTPGEHMVRNEQAKSVMMLTRPKMTSTWAAGFAFNKCHADKRTPYDPHL 95
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A8J2SM54_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM54_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.070e-17 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMDKPSPDR------EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPY 231 Y VLSTYV ++ +++ R EV HLC +++ G RN QA+A L+ +PK+TT W AG SFS+CHAER+VPYDPY Sbjct: 202 YAVLSTYVADSTNLNDDGSMRNVNGVWEVPHLCSIQWEN-GHVRNMQAKAARLLKKPKLTTLWAAGLSFSRCHAERTVPYDPY 283
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: R1ERS5_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ERS5_EMIHU) HSP 1 Score: 80.5 bits (197), Expect = 6.860e-16 Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMDKPSPDR-EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYL 234 Y +L+ Y N + K E+ H C + + PG+ RNEQA A +T P MT WGAG SFS+CHAER VP DP+L Sbjct: 182 YAILTAYPPNAMQLGKNVNGHWEMPHFCRARVVSPGIVRNEQASAAAGLTRPLMTALWGAGLSFSRCHAERRVPADPHL 260
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: F0Y7S9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7S9_AURAN) HSP 1 Score: 79.7 bits (195), Expect = 1.610e-15 Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMDKPSPDR------EVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPY 231 Y VLSTYV + +++ ++ EV HLC + + G RN QA+A L+ +PK+TT W AG SFS+CHAER+VPYDP+ Sbjct: 192 YAVLSTYVADANQINEDGSEKNINNVWEVPHLCSILWQD-GHVRNMQAKAARLLEKPKLTTLWAAGLSFSRCHAERAVPYDPH 273
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S3LZG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZG3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.930e-15 Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 1 YGVLSTYVQNTADMDKPSPDR-------EVSHLCEVKFIGP-GLPRNEQARAIHLMTEPKMTT-TWGAGYSFSKCHAERSVPYDPY 231 Y VLSTYV ++A +++ P EV HLC V F G G+ RN + + M +PK+T WGAG SFSKCHAER PYDP+ Sbjct: 46 YAVLSTYVADSATLNENMPGHKGTNGIYEVPHLCMVTFSGSYGMVRNWGTKCLRNMNKPKITNMVWGAGLSFSKCHAERKAPYDPH 131
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S2TJQ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJQ0_9EUKA) HSP 1 Score: 77.0 bits (188), Expect = 1.090e-14 Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 1 YGVLSTYVQNTA-DMDKPS------PDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLD 237 YGVLSTYV N D+ K P E+ +C+ G G+ RN QA A + + P ++ TW AG+SF+KCH ER VP DPYL+ Sbjct: 38 YGVLSTYVGNVKQDLSKSGHVLIGHPHYEIPFICKTIVGGHGVVRNSQATAAYCLPRPHLSFTWAAGWSFAKCHFERVVPNDPYLE 123
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Match: A0A7S0H294_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H294_9EUKA) HSP 1 Score: 76.3 bits (186), Expect = 1.260e-14 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 1 YGVLSTYVQNTA-DMDKPS------PDREVSHLCEVKFIGPGLPRNEQARAIHLMTEPKMTTTWGAGYSFSKCHAERSVPYDPYLD 237 YGVLSTYV N D+ + P+ E+ +C+ G G+ RN QA + + +P ++ TW AG+SF+KCH ER++P DPYL+ Sbjct: 202 YGVLSTYVGNVKQDLSRKGEVLIGHPNYEIPFICKTIVGGHGVVRNSQATGAYCLPKPHLSYTWAAGWSFAKCHFERNIPNDPYLE 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1024.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1024.165.1 >prot_H-paniculata_contig1024.165.1 ID=prot_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp YGVLSTYVQNTADMDKPSPDREVSHLCEVKFIGPGLPRNEQARAIHLMTEback to top mRNA from alignment at H-paniculata_contig1024:410..1175+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1024.165.1 ID=mRNA_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=766bp|location=Sequence derived from alignment at H-paniculata_contig1024:410..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1024:410..1175+ >mRNA_H-paniculata_contig1024.165.1 ID=mRNA_H-paniculata_contig1024.165.1|Name=mRNA_H-paniculata_contig1024.165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig1024:410..1175+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |