mRNA_H-paniculata_contig10220.163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10220.163.1
Unique NamemRNA_H-paniculata_contig10220.163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10220.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10220contigH-paniculata_contig10220:4127..4697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10220.163.1prot_H-paniculata_contig10220.163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10220 4167..4490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.5178719-UTR-H-paniculata_contig10220:4126..41661622928728.5178719-UTR-H-paniculata_contig10220:4126..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10220 4127..4166 -
1691480596.8793435-UTR-H-paniculata_contig10220:4126..41661691480596.8793435-UTR-H-paniculata_contig10220:4126..4166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10220 4127..4166 -
1622928728.5698655-UTR-H-paniculata_contig10220:4490..46971622928728.5698655-UTR-H-paniculata_contig10220:4490..4697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10220 4491..4697 -
1691480596.8962739-UTR-H-paniculata_contig10220:4490..46971691480596.8962739-UTR-H-paniculata_contig10220:4490..4697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10220 4491..4697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.5507243-CDS-H-paniculata_contig10220:4166..44901622928728.5507243-CDS-H-paniculata_contig10220:4166..4490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10220 4167..4490 -
1691480596.8890111-CDS-H-paniculata_contig10220:4166..44901691480596.8890111-CDS-H-paniculata_contig10220:4166..4490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10220 4167..4490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10220.163.1

>prot_H-paniculata_contig10220.163.1 ID=prot_H-paniculata_contig10220.163.1|Name=mRNA_H-paniculata_contig10220.163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MEIDSRVHHSREAGSARVPRATTRGNARGRNGVLGGILLATRRRRASTGS
IAGQGAQADTESNGNRGETSDEQGVGTPAALAIDRTGSAQGSAIPPSADR
RVQTIDR*
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mRNA from alignment at H-paniculata_contig10220:4127..4697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10220.163.1 ID=mRNA_H-paniculata_contig10220.163.1|Name=mRNA_H-paniculata_contig10220.163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=571bp|location=Sequence derived from alignment at H-paniculata_contig10220:4127..4697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCGGTCGACATCTCCATTGTCACCCTGCCTGAGGTTTCGTAACATCC
GTCAAGTTTCTTTCCAGGAAGATCAGGTTACCCCGTCTCGCAAGCCGCCG
CCGATCGTGGACGCGGCAGGAAGAACAAGGTTGGGCAATGACGTGGTGGC
GATGGACGTGGAGAGGCGATTCGCACGACGTCCCTGCCGAGGACGGCGCC
AACGCCGATGGAGATAGACAGTCGAGTCCATCACTCCCGGGAGGCGGGGT
CGGCGAGGGTACCGCGGGCCACAACGAGGGGTAATGCTCGAGGGAGAAAT
GGGGTACTTGGGGGTATTCTCCTGGCGACGCGGAGGAGGAGGGCGAGCAC
AGGGAGCATAGCCGGCCAAGGGGCCCAGGCAGACACGGAGAGTAACGGGA
ACCGTGGCGAGACAAGTGACGAACAGGGAGTCGGCACACCCGCAGCGCTG
GCGATAGATCGTACCGGAAGTGCCCAAGGATCGGCCATACCACCATCGGC
GGATAGGAGGGTACAGACTATAGATCGGTGACGGCCATGGGTGTTGACCG
TATAGTTACGGCTGAACGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10220:4127..4697-

>mRNA_H-paniculata_contig10220.163.1 ID=mRNA_H-paniculata_contig10220.163.1|Name=mRNA_H-paniculata_contig10220.163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig10220:4127..4697- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATAGACAGTCGAGTCCATCACTCCCGGGAGGCGGGGTCGGCGAG
GGTACCGCGGGCCACAACGAGGGGTAATGCTCGAGGGAGAAATGGGGTAC
TTGGGGGTATTCTCCTGGCGACGCGGAGGAGGAGGGCGAGCACAGGGAGC
ATAGCCGGCCAAGGGGCCCAGGCAGACACGGAGAGTAACGGGAACCGTGG
CGAGACAAGTGACGAACAGGGAGTCGGCACACCCGCAGCGCTGGCGATAG
ATCGTACCGGAAGTGCCCAAGGATCGGCCATACCACCATCGGCGGATAGG
AGGGTACAGACTATAGATCGGTGAATGGAGATAGACAGTCGAGTCCATCA
CTCCCGGGAGGCGGGGTCGGCGAGGGTACCGCGGGCCACAACGAGGGGTA
ATGCTCGAGGGAGAAATGGGGTACTTGGGGGTATTCTCCTGGCGACGCGG
AGGAGGAGGGCGAGCACAGGGAGCATAGCCGGCCAAGGGGCCCAGGCAGA
CACGGAGAGTAACGGGAACCGTGGCGAGACAAGTGACGAACAGGGAGTCG
GCACACCCGCAGCGCTGGCGATAGATCGTACCGGAAGTGCCCAAGGATCG
GCCATACCACCATCGGCGGATAGGAGGGTACAGACTATAGATCGGTGA
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