mRNA_H-paniculata_contig1022.161.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1022.161.1
Unique NamemRNA_H-paniculata_contig1022.161.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1022.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1022contigH-paniculata_contig1022:8856..9813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size200
Cds size129
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1022.161.1prot_H-paniculata_contig1022.161.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1022 8856..9743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.3083801-CDS-H-paniculata_contig1022:8855..89481622928728.3083801-CDS-H-paniculata_contig1022:8855..8948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1022 8856..8948 -
1691480596.815163-CDS-H-paniculata_contig1022:8855..89481691480596.815163-CDS-H-paniculata_contig1022:8855..8948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1022 8856..8948 -
1622928728.3272817-CDS-H-paniculata_contig1022:9707..97431622928728.3272817-CDS-H-paniculata_contig1022:9707..9743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1022 9708..9743 -
1691480596.8248985-CDS-H-paniculata_contig1022:9707..97431691480596.8248985-CDS-H-paniculata_contig1022:9707..9743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1022 9708..9743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.3394463-UTR-H-paniculata_contig1022:9743..98131622928728.3394463-UTR-H-paniculata_contig1022:9743..9813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1022 9744..9813 -
1691480596.8319805-UTR-H-paniculata_contig1022:9743..98131691480596.8319805-UTR-H-paniculata_contig1022:9743..9813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1022 9744..9813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1022.161.1

>prot_H-paniculata_contig1022.161.1 ID=prot_H-paniculata_contig1022.161.1|Name=mRNA_H-paniculata_contig1022.161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MRIRMGMKPRLSHMDQSTQDDAPNSAAEDRHHCVLEEETAVID
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mRNA from alignment at H-paniculata_contig1022:8856..9813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1022.161.1 ID=mRNA_H-paniculata_contig1022.161.1|Name=mRNA_H-paniculata_contig1022.161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at H-paniculata_contig1022:8856..9813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAACCACTACAGGAAGCAGCACCGCAAGCAGTAGGTGACCTTGATGCA
GCAACTTGGGACTGAGTCCGATGAGGATAAGGATGGGGATGAAGCCGCGG
TTATCGGTGAGTGTCGATCTTCTCTGATTGCAGTGCCAGTGTGTATTTGT
AGTCAGCACAGCTGGCGAGTACAACTGTACAGTACTGTACTGTACTGTAT
TAACGGCACTATTTTAGAGTCCGATTGAGATATTTAAAATTTATTAGGTG
CAAATTATACTCGTAGGCTAGCCCAAAGCTGCTGGAATGACACGAGGTAG
GACGAGGTTTGTTACTTGTATATTGATAAATTACAGATTCCTGTTCCTTG
ATAAGATGTATTGAATATAAAAGGTGAAAAACGCCGCAAAAGAAAATGTG
GTTCGTGTAGCGTTGCCAGCTAACTTCACAGTATTGTTCTCAGTCGAGTC
ACCTATTGTGTTGCAAGGCGTAGACCTCCAGTTTGATGGGGGCTTTGTTG
GATCCTTGCTGAGTGAACATTTCACGTTCATACGGTATGGCAGGGTCAGT
GTTTCAGTGCATTTTCCAATATATGTAGTGCAGTATAGTATGTTCAGACT
ACTATATTCACTGATATGTGAATATATATATATATATATATCATGGGTGT
CTCGACTTTCAAGTTTTTGCTTTGCGGTAAGCCTTATAAACAGAGGTGTA
CGGTATTGGTTAATTTAGCCATTTGATGCAACACGAGAGCAGTAACGTAG
TAGCCCTTACATATCAATACAAACAAGAACATGAACGACAGTTGTTCGTG
ACTCTTGTGTCCTCCTGCATCTCCCCTTTGTTTTGTGTTTTACCCCTAAC
CCGTACTATGTCAAGCACATGGACCAGTCAACACAAGATGATGCTCCGAA
TTCTGCAGCTGAAGATCGCCATCATTGCGTACTTGAAGAAGAGACAGCGG
TGATTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1022:8856..9813-

>mRNA_H-paniculata_contig1022.161.1 ID=mRNA_H-paniculata_contig1022.161.1|Name=mRNA_H-paniculata_contig1022.161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig1022:8856..9813- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGATAAGGATGGGGATGAAGCCGCGGTTATCGATGAGGATAAGGAT
GGGGATGAAGCCGCGGTTATCGCACATGGACCAGTCAACACAAGATGATG
CTCCGAATTCTGCAGCTGAAGATCGCCATCATTGCGTACTTGAAGAAGAG
ACAGCGGTGATTGACCACATGGACCAGTCAACACAAGATGATGCTCCGAA
TTCTGCAGCTGAAGATCGCCATCATTGCGTACTTGAAGAAGAGACAGCGG
TGATTGAC
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