mRNA_H-paniculata_contig10219.160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig10219.160.1 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI) HSP 1 Score: 569 bits (1467), Expect = 4.910e-189 Identity = 373/563 (66.25%), Postives = 418/563 (74.25%), Query Frame = 1
Query: 1 VFSGLVPVASRQDQREPACTYMLECCVRPDVEAVRMLHVVSLIASEHGLELVRKRGAQVLYGVAPPPADSGGSCTACQNRRRSSPQASSANFPLPGAIPHAKHNRNQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSFWPTXXXXXXXXXXXXXXXXXXXXXKTRG------------AEKAEETD---------SPELDVWRGAGGAGWGPWSHVDMQLVIGQASKHRVLLIRFVTARPASCREALRVAATAAEIGQPLAIAPAAKGFVSSVKSSLRERGMLLECLEVNLPAVGMGGWKGRVDLDPQFLEQVEGMCQWDMVASLKEAGLALDEHARSEELRGVVVTRLLEGMFEICDLPMLPPPPQLVLAVPRPTDILPTRVESMPELSREDEYELADHLFASEASRVMATVLARCIRFTERCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRTRMAAAFHRHVGKRAELGIDPFVELPLYFCSIISNRRPGHLYLTYWHLCVVTRYPGFSPNVVVMALEDVDAVELVKFFVGHGIQVSVCVKG 1626
VFSGLVPVAS Q Q EP CTYMLECCVRPDV+AV +LHV SLIA+ HGLELVRKRG QVLYGVAPP +++ SP S FP P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX RG A K T + EL W GAGGAGWG WSHVDMQLV+GQASKHRVLL+RFVT+R A+ RE R+AA AAE G+PLAIAPAAKGFVSSV+ +LR+RG LLE LE LP K +V++D QFL QVEGMCQ+DMVASL+EAG++LDEHAR+EELRGVVVTRLLE MF + LPMLPPPPQLVLA+PRP DILP+ V+ MP+L ED EL+ H F SEASRVMA VLARCIR+TE+CDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGH+AVRR+RM AAF R + R E GIDP VE P+YFCSII NRRPG+LYLTYWH+CVVT+ PGF+ V VM LED+DAVE+VK FVG+GIQV ++G
Sbjct: 465 VFSGLVPVASNQGQGEPVCTYMLECCVRPDVQAVTILHVASLIAANHGLELVRKRGGQVLYGVAPPASNA-----------PPSPHDSIL-FPHSPRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPENEVEGAAERGTADSSAAAGGXSASKGAATGKLWGGAVGGATELRGWWGAGGAGWGAWSHVDMQLVVGQASKHRVLLVRFVTSRTATSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLE-ELPVQ-----KTKVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEELRGVVVTRLLEEMFNLVGLPMLPPPPQLVLAMPRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAVRRSRMTAAFSRVMQSRPEAGIDPNVEAPVYFCSIICNRRPGYLYLTYWHVCVVTKVPGFASTVTVMNLEDIDAVEIVKLFVGYGIQVRKGLRG 1009
BLAST of mRNA_H-paniculata_contig10219.160.1 vs. uniprot
Match: A0A836CAL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL5_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.630e-44 Identity = 122/356 (34.27%), Postives = 176/356 (49.44%), Query Frame = 1
Query: 580 GWGPWSHVDMQLVIGQASKHRVLLIRFVTARPASCREALRVAATAAEIGQPLAIA---------------PAAKGFVSSVKSSLRERGMLLECLEVNLPAVGMGGWKGRVDLDPQFLEQVEGMCQWDMVASLKEAGLALDEHARSEELRGVVVTRLLEGMFEICDLPMLPPPPQLVLAVPRPTDILPTRVESMPELSREDEYELADHLFASEASRVMATVLARCIRFTERCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRTRMAAAFHRH-VGKRAELGIDPFVELPLYFCSIISNRRPGHLYLTYWHLCVVTRYPGFSPNVVVMALEDVDAVELVKFFVGHG 1599
GWG + VD QLV+ + +KHRVLL+R + A A AA G A A P A F+ V++ L +G+L L P GG LD F+ Q+E C+ D+ +L L+E +E R +L+ MF++ +P P + +PRP P ++ LS + EL+ H+F +EA RV+A VLAR + +CDE+M+ + N Q + R+ ++Y EL QALRD H + + FHR V E +DP VE P++FCS+++ PG +YLTYWHLC+VT GF PNVV + L V VE + + G G
Sbjct: 364 GWGDIAVVDAQLVVSRPTKHRVLLVRLLEETAEG--RAPHTAPAAAAAGDAAAAAEGDGRTPRDALADALPVAAVFLDRVRAELLHQGLLNSALAAAPPRPRAGGQAAEPPLDADFVAQLEEACRTDLSTALGAFARQLEEFLEEQERRAERAAAMLKPMFDLYRMPF---PGRAAEELPRPFGKAPVAA-ALRGLSAGEVRELSRHVFKNEADRVLAFVLARWRSYVGQCDEEMSRAVDTLNHQALDRLLELRMYLCELMQALRDEHASAAAECITKPFHRAIVASGIETSVDPDVEGPIFFCSVLAGSWPGTMYLTYWHLCLVTSLTGFRPNVVEIPLRHVSQVEAHRMWWGRG 713
BLAST of mRNA_H-paniculata_contig10219.160.1 vs. uniprot
Match: W7TN29_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN29_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 5.680e-6 Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 1
Query: 1225 CDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRTRMAAAFHR---HVGKRAELGIDPFVELPLYFCSIISNRRPGHLYLTYWHLCVVTRYPGF 1524
CD +MTA MQRKN Q++ R+ R YQ L + LRD R T FH +G + D VE PLY+C I RP L++T+ + V++ GF
Sbjct: 275 CDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDN--PFRTT--VPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGF 373
BLAST of mRNA_H-paniculata_contig10219.160.1 vs. uniprot
Match: A0A7S3PV51_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV51_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 7.460e-6 Identity = 63/275 (22.91%), Postives = 116/275 (42.18%), Query Frame = 1
Query: 844 GGWKGRVDLDPQFLEQVEGMCQWDMVASLKEAGLALDEHARSEELRGVVVTRLLEGMFEICDLPMLPPPPQLVLAVP---RPTDILPTRVES----------------------------MPELSREDEYE--------LADHLFASEASRVMATVLARCIRFTERCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGH-VAVRRTRMAAAFHRHVGKR------------AELGIDPFVELPLYFCSIISNRRPGHLYLTYWHLCVVTR 1512
G + LD + Q++ +C+ +M++SL ++ L+ +AR E + + +++ F + PPP + A+P P D P V S +P DEY+ ADH+ S+ + V F ++ DE+++AR+ RKN QVM R+++ Q ++RE A+ + + + T+ A H ++ + ++PL C +I + PG +Y+TY L +VT+
Sbjct: 704 GAFPALPTLDVHYCSQIKDICKENMLSSLIKSASELEVYAREAETKCHRLLQIIHPTFASYEYA---PPPSIPDAIPVSSYPLDFTPPEVASPPWGQKVVEALNLIAAKSPSINSGFHDILPIKQHSDEYDNVGAALALSADHV-KSDFDKAKGAVSMVLTAFQKQEDEELSARLGRKNCQVMDRLAKMQAFKREAVMAIAGLYGLNLEATKAANKVHEYIKENLNETQEATDSMNTRRSFSASDQVPLLHCRVICHGSPGVIYVTYNELLLVTQ 974 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10219.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10219.160.1 >prot_H-paniculata_contig10219.160.1 ID=prot_H-paniculata_contig10219.160.1|Name=mRNA_H-paniculata_contig10219.160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=542bp VFSGLVPVASRQDQREPACTYMLECCVRPDVEAVRMLHVVSLIASEHGLEback to top mRNA from alignment at H-paniculata_contig10219:1062..8590- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10219.160.1 ID=mRNA_H-paniculata_contig10219.160.1|Name=mRNA_H-paniculata_contig10219.160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7529bp|location=Sequence derived from alignment at H-paniculata_contig10219:1062..8590- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10219:1062..8590- >mRNA_H-paniculata_contig10219.160.1 ID=mRNA_H-paniculata_contig10219.160.1|Name=mRNA_H-paniculata_contig10219.160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3252bp|location=Sequence derived from alignment at H-paniculata_contig10219:1062..8590- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |