mRNA_H-paniculata_contig10197.153.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10197.153.1
Unique NamemRNA_H-paniculata_contig10197.153.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10197.153.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.310e-12
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:  447 NPLADHRDVLQLTLDFAWKEGFLFVASVSKRWREAW-CERPTETSMKSAVQSASRLAWAKDGGCRWDVLTCARAAGELNL 683
            NPLAD   +L+  + FA + GFLFVA VS+ WR+AW  ERP ET + +AVQS SRL WA+  G  W    CARAA   +L
Sbjct:  726 NPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHL 804
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10197.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE3.310e-1252.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10197contigH-paniculata_contig10197:3297..4211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue7.5e-13
Seed eggNOG ortholog2880.D7FMP0
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size915
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10197.153.1prot_H-paniculata_contig10197.153.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10197 3443..4039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928725.190831-UTR-H-paniculata_contig10197:3296..34421622928725.190831-UTR-H-paniculata_contig10197:3296..3442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10197 3297..3442 +
1691480595.9126093-UTR-H-paniculata_contig10197:3296..34421691480595.9126093-UTR-H-paniculata_contig10197:3296..3442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10197 3297..3442 +
1622928725.2202897-UTR-H-paniculata_contig10197:4039..42111622928725.2202897-UTR-H-paniculata_contig10197:4039..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10197 4040..4211 +
1691480595.9510021-UTR-H-paniculata_contig10197:4039..42111691480595.9510021-UTR-H-paniculata_contig10197:4039..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10197 4040..4211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928725.2085354-CDS-H-paniculata_contig10197:3442..40391622928725.2085354-CDS-H-paniculata_contig10197:3442..4039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10197 3443..4039 +
1691480595.933688-CDS-H-paniculata_contig10197:3442..40391691480595.933688-CDS-H-paniculata_contig10197:3442..4039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10197 3443..4039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10197.153.1

>prot_H-paniculata_contig10197.153.1 ID=prot_H-paniculata_contig10197.153.1|Name=mRNA_H-paniculata_contig10197.153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MKSIFDRHRYHHDHATKPPSGDNNKLLSSNNSAQQQPTLPPLQQLQQHQP
PPVTMAMTHKLPRPANWCAADRMNAAKQRATRSSSLDIAPPELMRLEPAR
NPLADHRDVLQLTLDFAWKEGFLFVASVSKRWREAWCERPTETSMKSAVQ
SASRLAWAKDGGCRWDVLTCARAAGELNLCVPAPVLFEASFTTFILFG*
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mRNA from alignment at H-paniculata_contig10197:3297..4211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10197.153.1 ID=mRNA_H-paniculata_contig10197.153.1|Name=mRNA_H-paniculata_contig10197.153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at H-paniculata_contig10197:3297..4211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGCCCCCCTCACCCCGGTGCTGCCGGCGCACGTCCAAGCACCATCAG
AACAGTAACGGCGACAAAAACAGCAGCAATCCAAGACATCTCATTCCAAG
GCCCCTCTACCTAGTGAGAAATAGATACGAACGCACCCAGGTCATTATGA
AAAGCATTTTCGACAGGCATCGGTATCATCATGATCATGCTACTAAGCCA
CCTTCTGGGGATAACAACAAGCTGTTGTCTTCCAACAACTCCGCCCAACA
ACAACCAACACTACCACCACTGCAGCAGCTGCAGCAGCACCAACCACCTC
CAGTGACCATGGCAATGACACACAAATTGCCTCGGCCAGCAAACTGGTGC
GCCGCAGACCGCATGAACGCAGCCAAACAACGGGCGACGAGGTCTTCCTC
GCTCGACATCGCGCCCCCAGAGCTCATGCGCCTGGAACCCGCGCGCAACC
CGCTGGCTGACCATCGCGACGTGCTGCAGCTGACGTTGGACTTCGCATGG
AAAGAGGGGTTTTTGTTTGTAGCCAGTGTGTCCAAGCGATGGAGAGAGGC
ATGGTGCGAGAGGCCCACGGAGACCAGTATGAAAAGTGCGGTACAGTCGG
CTTCGAGGCTCGCCTGGGCTAAGGATGGCGGGTGTCGGTGGGACGTGCTG
ACGTGCGCACGAGCTGCAGGCGAGTTGAATTTGTGTGTGCCAGCTCCAGT
ACTATTCGAGGCTAGTTTTACCACTTTTATACTTTTCGGGTAGATATGGT
TGACAGCAAGCACACTTTACACTCCGTTGTTCCCCGATACCATCCGAGCA
GAACGAACAACCAACGCCAGTTTTTAGCGCAGTCTACCCCAAACCCTGAT
TCCCACCCTACTGGAAGACTCCACTTCACTATTCAATACTTACAAAGCAA
CTGCAGCCAATACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10197:3297..4211+

>mRNA_H-paniculata_contig10197.153.1 ID=mRNA_H-paniculata_contig10197.153.1|Name=mRNA_H-paniculata_contig10197.153.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig10197:3297..4211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGCATTTTCGACAGGCATCGGTATCATCATGATCATGCTACTAA
GCCACCTTCTGGGGATAACAACAAGCTGTTGTCTTCCAACAACTCCGCCC
AACAACAACCAACACTACCACCACTGCAGCAGCTGCAGCAGCACCAACCA
CCTCCAGTGACCATGGCAATGACACACAAATTGCCTCGGCCAGCAAACTG
GTGCGCCGCAGACCGCATGAACGCAGCCAAACAACGGGCGACGAGGTCTT
CCTCGCTCGACATCGCGCCCCCAGAGCTCATGCGCCTGGAACCCGCGCGC
AACCCGCTGGCTGACCATCGCGACGTGCTGCAGCTGACGTTGGACTTCGC
ATGGAAAGAGGGGTTTTTGTTTGTAGCCAGTGTGTCCAAGCGATGGAGAG
AGGCATGGTGCGAGAGGCCCACGGAGACCAGTATGAAAAGTGCGGTACAG
TCGGCTTCGAGGCTCGCCTGGGCTAAGGATGGCGGGTGTCGGTGGGACGT
GCTGACGTGCGCACGAGCTGCAGGCGAGTTGAATTTGTGTGTGCCAGCTC
CAGTACTATTCGAGGCTAGTTTTACCACTTTTATACTTTTCGGGTAGATG
AAAAGCATTTTCGACAGGCATCGGTATCATCATGATCATGCTACTAAGCC
ACCTTCTGGGGATAACAACAAGCTGTTGTCTTCCAACAACTCCGCCCAAC
AACAACCAACACTACCACCACTGCAGCAGCTGCAGCAGCACCAACCACCT
CCAGTGACCATGGCAATGACACACAAATTGCCTCGGCCAGCAAACTGGTG
CGCCGCAGACCGCATGAACGCAGCCAAACAACGGGCGACGAGGTCTTCCT
CGCTCGACATCGCGCCCCCAGAGCTCATGCGCCTGGAACCCGCGCGCAAC
CCGCTGGCTGACCATCGCGACGTGCTGCAGCTGACGTTGGACTTCGCATG
GAAAGAGGGGTTTTTGTTTGTAGCCAGTGTGTCCAAGCGATGGAGAGAGG
CATGGTGCGAGAGGCCCACGGAGACCAGTATGAAAAGTGCGGTACAGTCG
GCTTCGAGGCTCGCCTGGGCTAAGGATGGCGGGTGTCGGTGGGACGTGCT
GACGTGCGCACGAGCTGCAGGCGAGTTGAATTTGTGTGTGCCAGCTCCAG
TACTATTCGAGGCTAGTTTTACCACTTTTATACTTTTCGGGTAG
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