mRNA_H-paniculata_contig10188.147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10188.147.1
Unique NamemRNA_H-paniculata_contig10188.147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10188.147.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.320e-11
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = 3 
Query:   69 ATVDTSPTRHEPATVRELLQRLPQVLDAPEETQRALQTQNRASPEALEALAAARARFLRAAASFLRPCLQEAVVRNLTRDDPLAPPTFEHVIPDQT--EELASRQREVNAATSRVGAEMTTLDASVARVSEKERQLRQKLSELEHQVE 506
            ATVD++     P ++RELL+R+PQVL+A  ++  AL  Q+RAS +A+E+++ A AR L++A +F       +V+ NL R DP   P  E   PDQ   ++L + +R V+  T R  +E   L +S  RV E+   L++++  L  QVE
Sbjct:    3 ATVDSASRPTVPTSLRELLERVPQVLNA--QSPGALHMQSRASADAMESVSRAEARLLKSAETFHPHTFSVSVLENLGRRDPFIEPGDED-FPDQAADDDLEAERRRVDEITDRALSEQQPLRSSAERVEEQAMHLQERIKGLTLQVE 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10188.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE6.320e-1137.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10188contigH-paniculata_contig10188:2313..6644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Exons3
Model size516
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10188.147.1prot_H-paniculata_contig10188.147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10188 2378..6644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.6384547-UTR-H-paniculata_contig10188:2312..23771622928724.6384547-UTR-H-paniculata_contig10188:2312..2377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10188 2313..2377 +
1691480595.523013-UTR-H-paniculata_contig10188:2312..23771691480595.523013-UTR-H-paniculata_contig10188:2312..2377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10188 2313..2377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.648365-CDS-H-paniculata_contig10188:2377..24421622928724.648365-CDS-H-paniculata_contig10188:2377..2442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 2378..2442 +
1691480595.5404568-CDS-H-paniculata_contig10188:2377..24421691480595.5404568-CDS-H-paniculata_contig10188:2377..2442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 2378..2442 +
1622928724.6571853-CDS-H-paniculata_contig10188:5564..57701622928724.6571853-CDS-H-paniculata_contig10188:5564..5770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 5565..5770 +
1691480595.5519054-CDS-H-paniculata_contig10188:5564..57701691480595.5519054-CDS-H-paniculata_contig10188:5564..5770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 5565..5770 +
1622928724.6703472-CDS-H-paniculata_contig10188:6465..66441622928724.6703472-CDS-H-paniculata_contig10188:6465..6644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 6466..6644 +
1691480595.5617282-CDS-H-paniculata_contig10188:6465..66441691480595.5617282-CDS-H-paniculata_contig10188:6465..6644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10188 6466..6644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10188.147.1

>prot_H-paniculata_contig10188.147.1 ID=prot_H-paniculata_contig10188.147.1|Name=mRNA_H-paniculata_contig10188.147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MATVDTSPTRHEPATVRELLQRLPQVLDAPEETQRALQTQNRASPEALEA
LAAARARFLRAAASFLRPCLQEAVVRNLTRDDPLAPPTFEHVIPDQTEEL
ASRQREVNAATSRVGAEMTTLDASVARVSEKERQLRQKLSELEHQVEGAG
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mRNA from alignment at H-paniculata_contig10188:2313..6644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10188.147.1 ID=mRNA_H-paniculata_contig10188.147.1|Name=mRNA_H-paniculata_contig10188.147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4332bp|location=Sequence derived from alignment at H-paniculata_contig10188:2313..6644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGACACTTTAGTCGTCGAGCTGGTCCTAAAGGTAAAAGGTCCTCACGA
AACCCTGCGGAGCCTATGGCAACTGTAGACACCTCCCCGACAAGACATGA
ACCCGCAACAGTGCGAGAGCTCCTTCAACGGTGAGGAGGACTGACGGTGG
CGGTGGCGGTGATGTAAAGTTGATGGGATCGTGTTGATGTACGACTGAAC
TGTACTGTGCTATAAAGTACCATAGTAACTGTACTCCCTGTACCGTACTC
TATCTCACCCAGCTGAGACACAGATAGTACGGCAAGGCAGACCAAACTTC
TGGCAGGTATCAGTTGATTCCCGCAAGATAGATCCAGCAGCGATACGTTC
CTCTCTCTTTAACGACCTTGGAAGAAACTTACTTTGGAAAACTTGAATTT
TCAAAAATGTTCCGAAAAATCACCAACTTACGAACGTACTATCTGCAGGA
TGAATAGGATACATGGATCCTACACCGTTCACCTGTACTTTCGAGCTGTA
GAGCACTGCCGTGAACAGGGACCACCGAACAATCGATTATACCTCTCATG
CTGCTTGAAATTTTGCACCCAATTAATCGGGAAGGCAACTACAAGCATAG
TCAGGTTGGCTGTTTATCGCTGTGTACCAGCAGTTGCTCCTTTCTCTCCT
TTGCCCAGCTCATCGACACCGCTGCGCAATATTTCGAGAGCGGTCCTGCA
AAAAAAAATGACCAGGCCGAAGGCTGCTGCACCATACCTGCCCCCATAAC
CCCTCGGTCAATACACACATTTATCTAGTTTGGCGTGAGTATGGCCAGCA
GCAAAAGGCTGTAAAAAGTTGAAGGTGGAAGGCGTGAAAACACCCCATAC
CTGCGTCAGGCTGACTTCATCGCTGAAGAAATCAAGGCTTTTGACATGAC
CGGCAAAATCTGACAGAACCAACCGCCGACCTGCTTGAATCTGACAGAAC
CGACTGCCGACCGACTTGAATCACACAGAACTGACCGCCGACCAGGCTGG
AATCTGACAAAATCGACCGCGAACCGGTTGTACAAATGATAATGTTACAA
AACCCCACCGAGAACCGGTTCTGCTTCCGGTCACGCGTAAGACGCATGTA
TAATTTTCTGGTCATGTATAAACGTGCCGACCATGTGTAGTTTCTGCCCG
AATGTACACTTCCCGGTCGTGTAGTAAAAAGAAAAAACAAACGACCTGCG
CTTCAAATTAAGAATCCGACAGAATCCTACCACGCACCGGCTCTGGTTCT
GGTAGCGCGTTAAAGTAATACTAAACACAAAAATCAAGAAGCCATCTCTA
TTTTTTTCTTCAAATTCCAAGCGTTGCTGTCGCTGCTACCATGTTGGTCA
TTGCTGCGGAGCTCGACAAACCTCCGTCGCCACTCACTGTGAAATGCTGA
CTATGCGGTGATGTTTCGGTGGTTGGTTGGCTGTGCGTCCGCCTTGTGAT
CAGGGAGGGGCGTTGTGCATTGTGTGCTGTGCGGAGTGTTTTTTTACAGC
GGCGGGCAAGCCTCTACCTTGACTGGCGCTAAGCATTCAATACAACACAT
GAACCAAATGTCAAGTATCAAATTTCAAATCTCCCGAATTTCCAGATTCA
AAGATCAATGATCACGCCCTTGTTCACGTGACTACGTACTGTGTATGGTA
GTGAGCTGAGGTTGCTGAGAAAAGAGAAAGGATATGGGGCTGCTCGAGCG
AGGTGCCAACGCGCCAACAGAGTAGATATGTGCATATGTTCAGAAACATG
ATAACATAAAATATATATTTTTCAACATGTACAGTCCCAAAGATCTCCGA
CCACTTTCACTCGACTTATCGCACATAACATGAGGTTGTTCACGACCGAA
CCTGGTACACATGGATCATGACCGGCTCGATATACAAATATACAGTCGGT
GCCCCGGGATGGAAGAACACAGGGATTCTAGTGTGGCGTGATATCTCGAA
GAGATGCGCAGGGCCAATACGAAGTAGCAGTGAAGCACACTTGTTTGGAG
AAAAGAAGATCGTTCAAAAGCGGCGCTTATGTGGCCAAAAGAAAAAGGAG
TGAGAGGGGTGGGCGAGGACACCACTCTCTCTATCCGAATCATTGAACAG
TATTTTAGATTATCCTTCTGGAATAGTATTCTAAACTATGATCAAACCCG
AGAGATAAGTCGAATTCTCAGTAGAACTGACAAAATCCAATAGAACATTA
TGGACGATAATCGAAATAAGATCCCAACAGATGCTAAACGTATGTTGCTC
CAACACGGGACACATGTAACATGGCCGACTTGTTGTTCAAATTATACAAC
CGGTGTCCCGGTATACATGTACAAATCACGGGCTATGCCGAGAAGCATTT
TTCAGGACCGAACCCGGTCCACATGTATCATGGCCAGGTTGATGTTCAAA
CTATACGACCGATGCCCCGGTACACAAATACACATTACCGGCTTTGCCAA
AAACAGCCAGACAGAACAGACTGTGAACCGGTTGTAGAAATGAAAAACCG
CACAGAGCCGACCGCCGATCGACTTAAATAATACAGAACTGACCGCAAAC
CAGTTATAGAAATGAAAAATCTCACAGAATACTACCGAAAACCGGTTCCG
GTTCTGGTCACGCGTACAAGCCATGTGTAACACCGGTCATATGAAAAGCC
TTGGAGAAAATGTGTTGCATTCACCCCCCGGACCACTACGACTATTTGCG
ACCATATCGCCTGAGTTTCAGAATGTGCAGGATGGATGATGGCACATAGA
ATGGTGTGTTCACCCCTCTTTCTTTTTTTTTCGTTTTACTAGTATTCGGA
GCAGTCGTACATGGTCTGGGGCACACGAAAATACAAGTGCTTATTCTGAA
ACTCTCAGCCGGTTATTTTTTTTAATAGTCACAAACAGTCGAAGTCGTTC
CGGTGGGTGTTTGTTTCAAGAGAATGAGCGGGTAAGCGACGTAAATAGTA
CAGTACATTTGTGCTGCAATTGCCATATATGTAAAGTATGAGAATAAAAT
ATAATCAATTTTTGCAGAATTTGCCTTTCTTTTCGACGTCGAGGAGATTT
TGCGAGGCAAAAAGATAGACAGACAGTAGTACATGAATGAATTCTTACGA
TTCCGCCCATTCGTAGAGGTCGCTTTCCCCTGCTTTGATGTCGGGGTTAG
ATAGGGATTAGACAAGGACTAAGTAGATGGGACGTGCCGCTAAAATATTG
AATGCACACACACGAACATGCACACCCTCCACTCCACCCTAACGCAAATC
AGGCTGCCGCAGGTTCTGGATGCACCCGAGGAGACTCAGCGGGCTCTACA
GACGCAAAATCGGGCCTCTCCCGAGGCTCTGGAGGCGCTAGCCGCTGCCC
GTGCGCGATTTCTCCGTGCCGCGGCTTCGTTCCTTCGCCCCTGTCTGCAG
GAAGCGGTCGTGCGGAACCTCACGCGGGATGATCCATTGGCGCCGCCTAC
CTTTGAACGTAGGCATACGAGCTACCTCAATATGCTGTACTCACTGTACT
GTACCGTTACTATTTACCGATATATCTACTAGAGTTCAATACTGACAGAG
TAGTGCAGAAAAAGAAGCCAATATATAATACAGGTTAGGCTACTCTTTAC
AATTGTAGAGTCCGAAGCCGTCCAAAACAGACACAGCAAAAAATTGCACT
TCTTGTCAGAGTCCACTTTTATTCCCGCGACTGGATCAAATTCATAGCCA
TCAACGTCATGTGGCTATACCCACTTTCTCTTGATATTTTCCCCTTCAAA
CTTTAGCGGGAACATATTGTGCCCAATTCCATAGTTGATAGCTGCACCCC
TCGGATGGGCACGAACAATCCTAATACGACGAAACTGTAAACATATTCGT
CTGGATGGATCAGCATGAGTAAGCACGTTTATTGTTATTCTATGTGCTTC
GGAAGGACTGATTGTCTACTGTACGATTGCTTATTTTGCGTAACAGCGGA
ACAAATATCTAGGGGTCAACAATTATTTTTACTTTATATGCCCCGCGCAT
ATTCTGAGCCTTCAGGCGAACACTGAGGCAACATGCATCTCCTCGCCTAA
AGATCACTAGGCCTGCCCTACAAAACATAATCACCAACGACTGCCTGCGC
CGCTTTTCCGCTCCACTCCCCCTCGCCCCCTTGAAAAAAACAAACAAAAA
AAGATGTAATTCCGGACCAAACAGAAGAGCTGGCCAGCAGGCAGCGGGAG
GTCAACGCGGCCACGTCGCGCGTTGGGGCGGAGATGACGACTCTCGACGC
CAGCGTGGCACGTGTCAGCGAGAAAGAGAGGCAACTGCGCCAGAAACTGT
CGGAGCTGGAGCACCAGGTGGAGGGGGCCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10188:2313..6644+

>mRNA_H-paniculata_contig10188.147.1 ID=mRNA_H-paniculata_contig10188.147.1|Name=mRNA_H-paniculata_contig10188.147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig10188:2313..6644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAACTGTAGACACCTCCCCGACAAGACATGAACCCGCAACAGTGCG
AGAGCTCCTTCAACGATGGCAACTGTAGACACCTCCCCGACAAGACATGA
ACCCGCAACAGTGCGAGAGCTCCTTCAACGGCTGCCGCAGGTTCTGGATG
CACCCGAGGAGACTCAGCGGGCTCTACAGACGCAAAATCGGGCCTCTCCC
GAGGCTCTGGAGGCGCTAGCCGCTGCCCGTGCGCGATTTCTCCGTGCCGC
GGCTTCGTTCCTTCGCCCCTGTCTGCAGGAAGCGGTCGTGCGGAACCTCA
CGCGGGATGATCCATTGGCGCCGCCTACCTTTGAACGCTGCCGCAGGTTC
TGGATGCACCCGAGGAGACTCAGCGGGCTCTACAGACGCAAAATCGGGCC
TCTCCCGAGGCTCTGGAGGCGCTAGCCGCTGCCCGTGCGCGATTTCTCCG
TGCCGCGGCTTCGTTCCTTCGCCCCTGTCTGCAGGAAGCGGTCGTGCGGA
ACCTCACGCGGGATGATCCATTGGCGCCGCCTACCTTTGAACATGTAATT
CCGGACCAAACAGAAGAGCTGGCCAGCAGGCAGCGGGAGGTCAACGCGGC
CACGTCGCGCGTTGGGGCGGAGATGACGACTCTCGACGCCAGCGTGGCAC
GTGTCAGCGAGAAAGAGAGGCAACTGCGCCAGAAACTGTCGGAGCTGGAG
CACCAGGTGGAGGGGGCCGGGATGTAATTCCGGACCAAACAGAAGAGCTG
GCCAGCAGGCAGCGGGAGGTCAACGCGGCCACGTCGCGCGTTGGGGCGGA
GATGACGACTCTCGACGCCAGCGTGGCACGTGTCAGCGAGAAAGAGAGGC
AACTGCGCCAGAAACTGTCGGAGCTGGAGCACCAGGTGGAGGGGGCCGGG
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