mRNA_H-paniculata_contig10178.144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10178.144.1
Unique NamemRNA_H-paniculata_contig10178.144.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A7S1HA72_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA72_HEMAN)

HSP 1 Score: 64.3 bits (155), Expect = 2.410e-12
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            +  DCEV  +HPFGCFV   PG EGLVH+SELD+GRV
Sbjct:   19 IYEDCEVMGVHPFGCFVALYPGKEGLVHVSELDIGRV 55
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.080e-11
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    7 RDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            RDCEV SI PFG FVEF PGLEGLVH+SELD+ RV
Sbjct:  689 RDCEVVSIQPFGAFVEFAPGLEGLVHVSELDVNRV 723
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A096P7H3_OSTTA (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P7H3_OSTTA)

HSP 1 Score: 64.7 bits (156), Expect = 3.880e-11
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            + R+C+VK I  FGCFVEFLPG+EGLVHISELD+ RV
Sbjct:  698 IYRNCQVKKIVEFGCFVEFLPGMEGLVHISELDVSRV 734
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A4RTW2_OSTLU (Polyribonucleotide nucleotidyltransferase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RTW2_OSTLU)

HSP 1 Score: 61.6 bits (148), Expect = 4.730e-10
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            + R C VK +  FGCFVE+LPGLEGLVHISELD+ RV
Sbjct:  697 IYRGCVVKKVVEFGCFVEYLPGLEGLVHISELDVSRV 733
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.650e-9
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            R+C VK +H FGCFVE   GLEGLVH+SELDM R+
Sbjct:  616 RECVVKGVHNFGCFVEIATGLEGLVHVSELDMQRI 650
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: K8F698_9CHLO (Polynucleotide phosphorylase/polyadenylase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F698_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 2.940e-9
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            + R+CEVK I  FGCFVE  PG++GL HISEL++GRV
Sbjct:  215 IYRNCEVKKILEFGCFVEIFPGVDGLCHISELEVGRV 251
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A8J9RF41_9CHLO (Probable polyribonucleotide nucleotidyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RF41_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 3.080e-9
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGR 108
            + RDCEV SI PFG FVE LP + GLVH+SELD+GR
Sbjct:  783 IYRDCEVISIAPFGVFVEVLPNISGLVHVSELDIGR 818
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A3C0PJ12_9BACT (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Fibrobacteres bacterium TaxID=2052160 RepID=A0A3C0PJ12_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 6.650e-9
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 IRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            I D +VKSI  FG FVEFLPG EGLVHISELD  RV
Sbjct:   63 IYDAKVKSIVDFGAFVEFLPGKEGLVHISELDTKRV 98
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A1M3MDI6_9BACT (Polyribonucleotide nucleotidyltransferase n=2 Tax=root TaxID=1 RepID=A0A1M3MDI6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-8
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 IRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            I   +VKSI P+GCFVEFLPG EGL+HISE+D  R+
Sbjct:  630 IYPAKVKSIMPYGCFVEFLPGKEGLLHISEIDWKRI 665
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BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Match: A0A7X8F6R2_9BACT (Polyribonucleotide nucleotidyltransferase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A7X8F6R2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.020e-8
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   10 DCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV 111
            + +VKSI P+GCFVEFLPG EGL+HISE+D  R+
Sbjct:  632 EAKVKSIMPYGCFVEFLPGKEGLLHISEIDWKRI 665
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10178.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1HA72_HEMAN2.410e-1267.57Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
D8LGU0_ECTSI2.080e-1180.00Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A096P7H3_OSTTA3.880e-1172.97Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A4RTW2_OSTLU4.730e-1070.27Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A835ZC49_9STRA1.650e-968.57Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
K8F698_9CHLO2.940e-964.86Polynucleotide phosphorylase/polyadenylase n=1 Tax... [more]
A0A8J9RF41_9CHLO3.080e-969.44Probable polyribonucleotide nucleotidyltransferase... [more]
A0A3C0PJ12_9BACT6.650e-975.00Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A1M3MDI6_9BACT2.020e-866.67Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7X8F6R2_9BACT2.020e-867.65Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10178contigH-paniculata_contig10178:8731..8841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D8LGU0
Preferred namePNP1
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006139,GO:0006396,GO:0006401,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008299,GO:0008408,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010322,GO:0010323,GO:0010467,GO:0010563,GO:0010565,GO:0010675,GO:0010677,GO:0015994,GO:0015995,GO:0016036,GO:0016070,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016122,GO:0016123,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019747,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031425,GO:0031667,GO:0031668,GO:0031669,GO:0033013,GO:0033014,GO:0033554,GO:0034641,GO:0034655,GO:0042214,GO:0042440,GO:0042594,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045827,GO:0045833,GO:0045912,GO:0045936,GO:0046148,GO:0046246,GO:0046483,GO:0046700,GO:0046890,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051186,GO:0051188,GO:0051716,GO:0062012,GO:0062014,GO:0065007,GO:0071071,GO:0071072,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903725,GO:1903726
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
Ec32 ortholog descriptionPolyribonucleotide nucleotidyltransferase, RNA-binding domain
Ec32 orthologEc-28_001180.1
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.2425892-CDS-H-paniculata_contig10178:8730..88411622928724.2425892-CDS-H-paniculata_contig10178:8730..8841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10178 8731..8841 -
1691480595.2435832-CDS-H-paniculata_contig10178:8730..88411691480595.2435832-CDS-H-paniculata_contig10178:8730..8841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10178 8731..8841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10178.144.1prot_H-paniculata_contig10178.144.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10178 8731..8841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10178.144.1

>prot_H-paniculata_contig10178.144.1 ID=prot_H-paniculata_contig10178.144.1|Name=mRNA_H-paniculata_contig10178.144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
LIRDCEVKSIHPFGCFVEFLPGLEGLVHISELDMGRV
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mRNA from alignment at H-paniculata_contig10178:8731..8841-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10178.144.1 ID=mRNA_H-paniculata_contig10178.144.1|Name=mRNA_H-paniculata_contig10178.144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig10178:8731..8841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATCAGGGATTGCGAGGTCAAATCGATTCATCCGTTCGGGTGTTTCGT
TGAGTTTTTGCCGGGATTGGAGGGCCTGGTGCACATCAGCGAGCTGGACA
TGGGGCGAGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig10178:8731..8841-

>mRNA_H-paniculata_contig10178.144.1 ID=mRNA_H-paniculata_contig10178.144.1|Name=mRNA_H-paniculata_contig10178.144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig10178:8731..8841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATCAGGGATTGCGAGGTCAAATCGATTCATCCGTTCGGGTGTTTCGT
TGAGTTTTTGCCGGGATTGGAGGGCCTGGTGCACATCAGCGAGCTGGACA
TGGGGCGAGTCTTGATCAGGGATTGCGAGGTCAAATCGATTCATCCGTTC
GGGTGTTTCGTTGAGTTTTTGCCGGGATTGGAGGGCCTGGTGCACATCAG
CGAGCTGGACATGGGGCGAGTC
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