mRNA_H-paniculata_contig10175.143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10175.143.1
Unique NamemRNA_H-paniculata_contig10175.143.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10175.143.1 vs. uniprot
Match: D7G5K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K6_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.190e-26
Identity = 72/129 (55.81%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:  196 SCPSAELELLERRVSSAEREIAHLLLLSPAERLRKILWRFFDVYLPRAGLAQPHFHLDMGYPQSLPMDAYRQQLGLRMQRRLRDRIRMSFLARTSARDRYNGSNITIRPGSINILLSIAAGALLLACAD 582
            S  S   ELLE RV   ERE+A LL  SPAE LR+ L  FF  YLP AGLA+PHFHLDMGYPQSLPMD YR+QLGLR+QRR+R RIR   L          G  I +    ++  +++A GALLLAC D
Sbjct:  323 SVESLRQELLESRVRLEEREVAVLLRASPAEFLRETLEDFFSSYLPGAGLAEPHFHLDMGYPQSLPMDPYRRQLGLRIQRRVRQRIRSLLL----------GGGIDVE---VDFAMTLAGGALLLACKD 438
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BLAST of mRNA_H-paniculata_contig10175.143.1 vs. uniprot
Match: A0A6H5J5U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.250e-6
Identity = 77/209 (36.84%), Postives = 93/209 (44.50%), Query Frame = 1 
Query:  370 MGYPQSLPMDAYRQQLGLRMQRRLRDRIRMSFLARTSARDRYNGSNITIRPGSINILLSIAAGALLLACAD-----------------NSSTS-----EQNTQYFGDCRHGGSDVETTLTEAV----------------SYGSDDATAXXXXXXXXXXXXXXXXVSSGVGVVTVANEKEGGEGEEDGCFGGREASLLLGYLGALAEVAA 882
            MGYPQSLPMD YR  LGLR+QRR+R RIR   L+         G ++      +++ +++A GALLLAC D                 NSST      E+ T    D   GG  V     E V                  G D++      XXXXXXXXXXXX  SG G V                  G+EASLL+GYL A A  AA
Sbjct:    1 MGYPQSLPMDPYRWHLGLRIQRRVRQRIRFLLLS--------GGIDV-----EVDLAVTLAGGALLLACKDQQPVAATILGQNSTTGVNSSTKNGYKEEKQTNGSVDKTSGGGTVGKEAVENVLGRDAASAGSEKQTPGETGGDESRGKPHQXXXXXXXXXXXXXXSGGGAV----------------LSGQEASLLVGYLRAAALTAA 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10175.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K6_ECTSI3.190e-2655.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5U0_9PHAE5.250e-636.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10175contigH-paniculata_contig10175:763..5692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size972
Cds size969
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10175.143.1prot_H-paniculata_contig10175.143.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10175 763..5691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.1742883-CDS-H-paniculata_contig10175:762..10591622928724.1742883-CDS-H-paniculata_contig10175:762..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 763..1059 +
1691480595.2168467-CDS-H-paniculata_contig10175:762..10591691480595.2168467-CDS-H-paniculata_contig10175:762..1059Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 763..1059 +
1622928724.1879573-CDS-H-paniculata_contig10175:3164..32631622928724.1879573-CDS-H-paniculata_contig10175:3164..3263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 3165..3263 +
1691480595.2245078-CDS-H-paniculata_contig10175:3164..32631691480595.2245078-CDS-H-paniculata_contig10175:3164..3263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 3165..3263 +
1622928724.2045207-CDS-H-paniculata_contig10175:5118..56911622928724.2045207-CDS-H-paniculata_contig10175:5118..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 5119..5691 +
1691480595.232403-CDS-H-paniculata_contig10175:5118..56911691480595.232403-CDS-H-paniculata_contig10175:5118..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10175 5119..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10175.143.1

>prot_H-paniculata_contig10175.143.1 ID=prot_H-paniculata_contig10175.143.1|Name=mRNA_H-paniculata_contig10175.143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp
APTLRADPAALSADKDQDQYHQQEPEIDVPVDCSGGGGDDGGSGSSSNCE
SVENSPPASSVSLSSSCPSAELELLERRVSSAEREIAHLLLLSPAERLRK
ILWRFFDVYLPRAGLAQPHFHLDMGYPQSLPMDAYRQQLGLRMQRRLRDR
IRMSFLARTSARDRYNGSNITIRPGSINILLSIAAGALLLACADNSSTSE
QNTQYFGDCRHGGSDVETTLTEAVSYGSDDATATAVGVGVGVTAARGDGV
SSGVGVVTVANEKEGGEGEEDGCFGGREASLLLGYLGALAEVAAADAKGT
MAGGCPSVAAYRCGFAAAAAAAA
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mRNA from alignment at H-paniculata_contig10175:763..5692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10175.143.1 ID=mRNA_H-paniculata_contig10175.143.1|Name=mRNA_H-paniculata_contig10175.143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4930bp|location=Sequence derived from alignment at H-paniculata_contig10175:763..5692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACCGACGCTCAGAGCGGATCCAGCAGCGCTCTCTGCCGATAAAGATCA
AGACCAATATCATCAACAAGAACCTGAAATTGACGTGCCGGTAGACTGTA
GTGGGGGCGGCGGCGACGACGGCGGCAGTGGCAGCAGCAGCAACTGCGAG
AGTGTCGAAAATAGCCCACCTGCCTCTTCCGTGTCTCTTTCTTCCTCTTG
TCCTTCGGCGGAGTTGGAGTTGCTGGAGAGGCGCGTGAGCAGCGCTGAGC
GAGAGATTGCTCATCTACTTCTGCTGTCTCCTGCTGAACGTCTGAGGGTG
AGTAACTATTTGAATGAAGGTGGGGGGTTTCAATGAAGGAGGCCGACAAT
GACTTGAGACGTTTTTTTGTTGTTGTTTTTTAACCCCCGGAAGGCTGAGG
TACTAAAACCTTTCTCCGATGCTTCCATACTTGAGTAGTTCTACCGAAGT
ATTTCTACATTTCGTTTAACAGAACAGAGTTATTTATTCCTCTGCGGGAT
AGGCGCCATCCCGATTCGGCCGAACCAGGTAGGCAGTGTGGGGGTTGCAC
CCACTAAAAGACGTCTGAATAGACTTCTAGTCGTGGTAAGTTCACGAGCT
ACCCTACCCGTTCGGGCGTAGGTCCGTATGACTTGAGACTTTGGATGGAA
AAATTTCCCCTATGATACAAGTTTTGTCGTGTGCGTTCGTGCGTTCAGTT
TTTAGTGTATGAACTACCAAGATCGTGAAGGTAACTGTCGAACGCAAAAT
GGGAACACGATGGCCCTAAGAGGGAGTGAGTGGCTGGCTGTGGTGGGGGC
AGGACACCACCTGCTCTGGAGATTGGTTCGCTGAGTCTTGGGGGATAGGG
CGTACTTTTAAGCGTAATTCTAGTAGTGCTAAGCATGTTGTTGGGTTTGT
TTTGTCGTCGATGAATGAACTGACTGGTAATCGTCTAGGGGTTACTGTGT
AGGGGACTGTAGTTGAGGAAAGTATGGAACCATCGGATAAAGGTTTTTGC
CTCAGCCTTCCGGAGGTTAAAAAACCCAACAAAAAAAACCCTTGGAGCAT
CAAAAACGTTTCTGCTCTTTGGAGTTTCTTCGTATCCAATATCCTGTTAA
GGAAGACCGGTAAACAAAGACAAGAAAACGATACGGTATCAACGCTATCT
AGAGGTTGCGACATTCAATGCTCTCGTCCGTAGCTGTTTCGTAGTCCCGG
TAGCGGTAGTGCCATATTGATCTGAAGTATTCTCGACATTGACGGATACA
GCTGTAGAGTGGCTCGGAAGATTATCCAAAAGCATCAAAATACAATCAAT
ATCGTTTTGGGGGTGAGGGCGGTGGGAGAAAAAATAAGTTGACCAGGGGA
TGCCTGGATACTATAGATCCCTTGATTTTTGGCTCGGGTAAGGTCTTCCT
GGGGCAGTTTCCCCTCTAGAGAGCTCTGTTTGTTGCTGCGACGGGCGCGT
CTATGGGGGGTTTAACTGATAAATTTCTAAAATATTGGCTTAAGGGTTAT
GCGTGGAAACAGAGTTTGTCACTCAGTCAGGAGTTATGCGCCCGATATCT
CCATCGTCGACTATATTACAGACCACAAAAAGAGTGTCTATTCCGAAAAA
TGGGGTTCAGCTTTTAGATGAGGTTTGACCCCGAAACAGTACAGTACTTT
CCCTACAACCTGAAGTCATGAACAGAGCTACCTTTATTTGGAGGATCCGA
TGCCCCCTCGATCGCATTGTAACTATTTTCGGTTTGTAACTACCTCGGTG
CCCTCCATAGCGTTCTGCGAAAGCACTCTCTTTGCCACGATTTCGAATTG
GAAAATCCGACATTTTGAGCCCCTAGAAGAGTGTTTTTTTCACATAACGG
TGTGGTACCACGGAAGTGGTGTGTAAAAAAAAAAAAAAAGTTACAACGCG
ATCGAGGACCAATAAGTCCTCCTCCAAGTAAAGGTCGTTGGTTATGACTT
TTTAGGTTAGGGGGAAAACGCTGTTTTGGGGGTTGAACTTTGTCTTCATG
ACAAATTGTTCACAGCCATAGCTCGCGGCTACTCGCATCCGCATTTTTAT
TTTACTCTTTTTTGCCTTTTTGTCAACAACGGGTTGTCAGAGAGAGAAAA
CATCCTTGACCCTAACATCGAGGTAGGTGGTGGTTTGTACCATGGGGATT
CCCTTGACTTTTGTCGTAAGCTTCGCGTACGTACGTCGTCATCCTCGGCA
CGGACGTCGAACTGACTGAGAGCTCGCCAACGCTAAAATGGCTTGTCCCT
GCCCCCCTCCTGTGCTCTTCCTATTTCCACCATCACGTGATAACTTTCGA
TTTTTCTCTTCGAAACTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGC
CTCCATCCACTCGCGTCCGTGCCCCTTCTTTTTGTTCATGTTTTTTTTTT
AGAAAATCCTGTGGAGGTTTTTTGACGTGTATCTCCCCAGGGCGGGACTG
GCGCAACCACACTTTCATTTGGACATGGGGTACCCGCAGTCATTACCCAT
GGTAAGGAAGGAGTAAGAAGTTTGTATGTGATGTGTTTTTGATCTGTATA
TGTACTACTAATATTACATTTTTCATCTTCTTTACATATATAATATATAT
TTTTTAAATTATTATTTTGATTTTTATTCAATGCTTGAGCCGCATCACCG
AAACCCGCGGCTGGGTGATGCTTGTCGCTGGCTACAGGTACCGCACCGGT
GGTTACAGTGACGAGATCGGAGCGCCCACATCTTTGTACGTACTTAGGTT
AGTTCTCTCTGTTTCTAGCTGTCGCGAATGGATAACATTTGTCGCAGTGG
GTATACCCTATATAAGGTACCTTTTGTCTGTTGATACCATTGTTTCCGAT
ATACGGTATCTGATACCTTATACATTTCAATATGCCAATTAAGATATACA
CCTGAGGAACCTCACACGCAAATTGATGGTTTGTCAAAATGGCGAGGGCT
GGGAGAATGAACGAAATATGGATGGATAGATATTTCAATCAGCTGTCATG
CTAGCTTTGTAAAACCCAAAACGGATTAGAACTCATGGTGGAAGAGCCAG
CTGAATACGACACCTGTGACATGAAACCAAACACCCAAAATGATCCCTGA
TCAACTAAGATATAACTTACAAAACAGTCAAATGCACTCGACCTGGGACA
CGCTAGACCCTGTAGTTTGGCACAAACAGTGCTGATCGAGTGAGGGCATA
CCGTAAAATGATCATCAATGCATATCTCGGAATCGGGAAAACAATTAGTT
TACCACGGCGACATTTGACCGCGCCATACTCCATTAAAATACCTTGTTTT
GTCATGAAATGTTTTTTAAAGACATGCAAAAATTGAGATGAATCGGATCG
TTAGCCACGATGGTCCTCCAGTCGGTTTTCTAAAAAAACAGTCGATGGTT
TTCCCTGTTTTTACGCGTTGCCATGAAAACAAAGGCAACCGCTTTTGCAA
TAAAAAATCTGTAGTGAACCACGGGGGTGCTTGACCGACAGCGCTACACT
CTTAACAGGACAATTCGTTTTGCCGGAATTGTTTTTGGAGTGTAGTGTTG
GTGCAATTGAGTAACGGCTTGCGAAATTTGAGATGAATCCGACTTATTTT
CATGTTCCTCTGTACTAAAATTCAGTCAATTCTGTAGCCAAGAATCACTA
CCGCGTTATGTAGGACCTTGTCGTCTATGCCTACTGTTCCGTTGAGGCTC
TTCTGAATCGACCAAGCTAAGATACTAAGTGTGTGTGTGTGTGTGCAGTA
CTACGGTAGCTCCTGCACTTGCTGCGTGCCGCTGTAGCATCCTATTTCGC
CAGTTCCGCATCCATTCTGTTTATCTTCCGTCTTATTTTTAGGGTCGATT
TTTGCATGTATGTACCTAAAAACTATGAGATGTACGTTGTGTGTGGTGAC
TTTCCTCGGCAATGGTGAAACGCTTTAGCGCAGTCAGTAGCTCAAACGAT
GCGTCTTGCTCTTGCGAATCATTCGGTATCACCAATATGGAAAATGATCC
AAGTTTTCGCGGAGTTTATGGACTAAGCATGTTCACCTATATAGGGCCAC
ATACTGAATGTGTATATATATATATATATATATGGTGTCCTTCCTAAAAG
GGGCAATAAGCACCCAATGTCTGTCGAGGACGGTTACCCTCTTGTTTACA
TATCTTCATATTTCATGTACAACACCGCTACACAGAAGCAAAACTGACCG
TTCCTACTCGTCTCGATACCTTTTATTCATGGATCCCCAGTAAATTTATT
CCCGCAATTAAATCTAAACACCCCGCCACTTTCTCTCTATTTTATCTCTC
CAACTATTTTTTCCATGCCTGCGCTCCCGCCCTCCTTTCCTTCCCTCTTC
CTCAAGGACGCCTACCGTCAGCAGCTGGGTCTTCGCATGCAACGCCGCCT
GCGCGACCGAATCCGTATGTCCTTCCTCGCCCGCACCAGCGCCCGCGACC
GTTACAACGGCAGCAACATCACCATCCGCCCCGGCAGCATCAACATCCTC
CTATCAATCGCCGCGGGGGCTCTGCTACTTGCATGCGCCGACAATTCCAG
CACCAGCGAGCAAAATACACAGTATTTTGGGGACTGCAGACATGGCGGCA
GTGATGTAGAGACGACGTTGACCGAAGCAGTTTCTTACGGCAGTGATGAT
GCTACTGCTACTGCTGTTGGTGTTGGTGTTGGTGTTACTGCCGCCCGAGG
GGATGGCGTAAGCAGTGGGGTAGGAGTAGTGACAGTAGCAAATGAGAAGG
AGGGGGGAGAGGGAGAGGAGGATGGGTGCTTCGGGGGTAGAGAGGCATCT
CTGCTGTTGGGATATCTGGGTGCATTGGCTGAGGTGGCGGCGGCAGATGC
AAAGGGGACTATGGCGGGTGGCTGTCCAAGTGTTGCGGCTTATAGATGTG
GTTTTGCTGCTGCTGCTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10175:763..5692+

>mRNA_H-paniculata_contig10175.143.1 ID=mRNA_H-paniculata_contig10175.143.1|Name=mRNA_H-paniculata_contig10175.143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig10175:763..5692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACCGACGCTCAGAGCGGATCCAGCAGCGCTCTCTGCCGATAAAGATCA
AGACCAATATCATCAACAAGAACCTGAAATTGACGTGCCGGTAGACTGTA
GTGGGGGCGGCGGCGACGACGGCGGCAGTGGCAGCAGCAGCAACTGCGAG
AGTGTCGAAAATAGCCCACCTGCCTCTTCCGTGTCTCTTTCTTCCTCTTG
TCCTTCGGCGGAGTTGGAGTTGCTGGAGAGGCGCGTGAGCAGCGCTGAGC
GAGAGATTGCTCATCTACTTCTGCTGTCTCCTGCTGAACGTCTGAGGGCA
CCGACGCTCAGAGCGGATCCAGCAGCGCTCTCTGCCGATAAAGATCAAGA
CCAATATCATCAACAAGAACCTGAAATTGACGTGCCGGTAGACTGTAGTG
GGGGCGGCGGCGACGACGGCGGCAGTGGCAGCAGCAGCAACTGCGAGAGT
GTCGAAAATAGCCCACCTGCCTCTTCCGTGTCTCTTTCTTCCTCTTGTCC
TTCGGCGGAGTTGGAGTTGCTGGAGAGGCGCGTGAGCAGCGCTGAGCGAG
AGATTGCTCATCTACTTCTGCTGTCTCCTGCTGAACGTCTGAGGAAAATC
CTGTGGAGGTTTTTTGACGTGTATCTCCCCAGGGCGGGACTGGCGCAACC
ACACTTTCATTTGGACATGGGGTACCCGCAGTCATTACCCATGAAAATCC
TGTGGAGGTTTTTTGACGTGTATCTCCCCAGGGCGGGACTGGCGCAACCA
CACTTTCATTTGGACATGGGGTACCCGCAGTCATTACCCATGGACGCCTA
CCGTCAGCAGCTGGGTCTTCGCATGCAACGCCGCCTGCGCGACCGAATCC
GTATGTCCTTCCTCGCCCGCACCAGCGCCCGCGACCGTTACAACGGCAGC
AACATCACCATCCGCCCCGGCAGCATCAACATCCTCCTATCAATCGCCGC
GGGGGCTCTGCTACTTGCATGCGCCGACAATTCCAGCACCAGCGAGCAAA
ATACACAGTATTTTGGGGACTGCAGACATGGCGGCAGTGATGTAGAGACG
ACGTTGACCGAAGCAGTTTCTTACGGCAGTGATGATGCTACTGCTACTGC
TGTTGGTGTTGGTGTTGGTGTTACTGCCGCCCGAGGGGATGGCGTAAGCA
GTGGGGTAGGAGTAGTGACAGTAGCAAATGAGAAGGAGGGGGGAGAGGGA
GAGGAGGATGGGTGCTTCGGGGGTAGAGAGGCATCTCTGCTGTTGGGATA
TCTGGGTGCATTGGCTGAGGTGGCGGCGGCAGATGCAAAGGGGACTATGG
CGGGTGGCTGTCCAAGTGTTGCGGCTTATAGATGTGGTTTTGCTGCTGCT
GCTGCTGCTGCTGCTGACGCCTACCGTCAGCAGCTGGGTCTTCGCATGCA
ACGCCGCCTGCGCGACCGAATCCGTATGTCCTTCCTCGCCCGCACCAGCG
CCCGCGACCGTTACAACGGCAGCAACATCACCATCCGCCCCGGCAGCATC
AACATCCTCCTATCAATCGCCGCGGGGGCTCTGCTACTTGCATGCGCCGA
CAATTCCAGCACCAGCGAGCAAAATACACAGTATTTTGGGGACTGCAGAC
ATGGCGGCAGTGATGTAGAGACGACGTTGACCGAAGCAGTTTCTTACGGC
AGTGATGATGCTACTGCTACTGCTGTTGGTGTTGGTGTTGGTGTTACTGC
CGCCCGAGGGGATGGCGTAAGCAGTGGGGTAGGAGTAGTGACAGTAGCAA
ATGAGAAGGAGGGGGGAGAGGGAGAGGAGGATGGGTGCTTCGGGGGTAGA
GAGGCATCTCTGCTGTTGGGATATCTGGGTGCATTGGCTGAGGTGGCGGC
GGCAGATGCAAAGGGGACTATGGCGGGTGGCTGTCCAAGTGTTGCGGCTT
ATAGATGTGGTTTTGCTGCTGCTGCTGCTGCTGCTGCT
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