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Homology
BLAST of mRNA_H-paniculata_contig10173.141.1 vs. uniprot
Match: D8LD44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD44_ECTSI) HSP 1 Score: 175 bits (444), Expect = 1.440e-47 Identity = 92/164 (56.10%), Postives = 119/164 (72.56%), Query Frame = 2
Query: 44 GFGGTKRTPNPKETPPSLTTGEAVARTMLKEYNILRKAGGEVARVYARLKGTERWYPVGHVCTEAGKIAEGLQGQKRLVLEHADTIYPPLRSGSGRKLELEVGYSNEE--DEEVILCKA-KYSREKVGIALDPLPNGPFFRDVDQAGMGKLVDKTSASSVKGLK 526
GFGG R P + +LTTGEAVAR ML EYN ++ GG+VAR+YARLK + WYPVG+VCTEAG A+G QGQKRL+L+HA +Y LRSG+G+KL LE GY + E D E+ +CK KY+ E+VG+ALDPLP+GPFF+ V + G G DK+SA+++ K
Sbjct: 156 GFGG-GRAKKPPQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARLYARLKDADDWYPVGNVCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGSVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFG--ADKSSAATLMDKK 316
BLAST of mRNA_H-paniculata_contig10173.141.1 vs. uniprot
Match: A0A6H5JWG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG2_9PHAE) HSP 1 Score: 171 bits (434), Expect = 3.910e-47 Identity = 90/164 (54.88%), Postives = 117/164 (71.34%), Query Frame = 2
Query: 44 GFGGTKRTPNPKETPPSLTTGEAVARTMLKEYNILRKAGGEVARVYARLKGTERWYPVGHVCTEAGKIAEGLQGQKRLVLEHADTIYPPLRSGSGRKLELEVGYSNEE--DEEVILCKA-KYSREKVGIALDPLPNGPFFRDVDQAGMGKLVDKTSASSVKGLK 526
GFGG R P + +LTTGEAVAR ML EYN ++ GG+VAR+YARLK + WYPVG+VCTEAG A+G QGQKRL+L+HA +Y LRSG+G+ L LE GY E D E+ +CK KY+ E+VG+ALDPLP+GPFF+ V + G G D++SA+++ K
Sbjct: 71 GFGG-GRAKKPPQQGKTLTTGEAVARHMLSEYNAIKAEGGKVARLYARLKDADDWYPVGNVCTEAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKMLVLEAGYGPVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFG--ADRSSAATLMDKK 231
BLAST of mRNA_H-paniculata_contig10173.141.1 vs. uniprot
Match: A0A836C865_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C865_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 5.650e-19 Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 2
Query: 101 TGEAVARTMLKEYNILRKAGGEVARVYARLKGTERWYPVGHVCTEAGKIAEGLQGQKRLVLEHADTIYPPLRSGSGRKLELEVGYSNEEDEEV-ILCKAKYSREKVGIALDPLPNGPFFRDVDQAGMGKLVDKTSAS--SVKGLK 526
+G A AR K + L +A VA YAR KG+E W+ + V + G A +QGQKRL+L+HA ++P L K LEVG++ EE EV ++ K Y+ E VG+ LD GPF++ DQ G+ +D SA+ S +G K
Sbjct: 18 SGLAAARKQQKLFLELVEAKEPVAFAYARAKGSETWHRIAEVAAKGGNFAAAVQGQKRLMLDHAVQLHPVLLVS---KATLEVGFATEEGGEVTVVAKDAYAGETVGVRLDAGNAGPFYKVTDQFGLSGRIDTKSAAGKSTQGGK 159
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-11_000390.1 |
Exons | 4 |
Model size | 1358 |
Cds size | 411 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10173.141.1 >prot_H-paniculata_contig10173.141.1 ID=prot_H-paniculata_contig10173.141.1|Name=mRNA_H-paniculata_contig10173.141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MLKEYNILRKAGGEVARVYARLKGTERWYPVGHVCTEAGKIAEGLQGQKR LVLEHADTIYPPLRSGSGRKLELEVGYSNEEDEEVILCKAKYSREKVGIA LDPLPNGPFFRDVDQAGMGKLVDKTSASSVKGLKSR* back to topmRNA from alignment at H-paniculata_contig10173:2596..8741- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10173.141.1 ID=mRNA_H-paniculata_contig10173.141.1|Name=mRNA_H-paniculata_contig10173.141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6146bp|location=Sequence derived from alignment at H-paniculata_contig10173:2596..8741- (Halopteris paniculata Hal_grac_a_UBK monoicous) GCAGCAGCGGGAACGCTCGACAGCAGCAGGAGCAGTAGCAGCGGGGTTCG
GTGGGACGAAGAGGACGCCTAATCCCAAAGAAACGCCTCCGTCTCTGACC
ACGGGGGAGGCAGTGGCGAGAACTATGCTCAAGGAGTACAACATTCTCAG
GAAGGCCGGGGGTGAGGTGGCGCGAGTGTACGCCAGGCTAAAGGGCACAG
AACGCTGGTACCCCGTCGGACACGTGAGAATATTTTCGCTTGACTTACAG
GGGCTAGTAGAGTTGCAGTAGGGAAACACCAAACCGTAGCCACGTGAGCA
GCTTCCTCGTCCCGTGTTTTGGACATAATATACAGTACCCGGAACACCTT
TGGATAATAACCTAGTTCGCAAGTAGCACAAAGTCTGTCCTTTGTACAGC
TTGGGGGGGGGGCATTGTATCCACGCCTATGTACAACAAAATGAAGCCAA
CTCAGGCACGTCGGGTGTTTGCCAGTATAGCATGTGGGCGGCTGGAGGAA
GTGCTGGAACTTTCCTCCCCGGAGGTGACATTCGATGTGACGTGTACTCA
GCCTGTACATGTGCTGGCGCACATCAAATCTAATGACGTTAAACGTAGCA
TGCTGCAAAAAGGCCTCTCTCCACCAGATTTCTGTCACCTTACACTCCAA
TTCCAGGTTGCAGCGACAACCCGAGAACGAACTGTACTAAGAGTATCACC
CGTTGACACCTTCAACGCCAGCGCACACTTTTATACAGCTCTACCAGCTT
TACCCTCGTCTTGGTATCCCGCCTGAGCCGCTAATCTCTTGTTCGAAAGC
TACGCCTACGTATGGTCATCGTCTATTGGTCCAAGGGTTTCAAGTGTTTA
CGAACCCTGGATCGAGTGGGACTGGTGCCTGTTCCCATCTCTCGATAATA
CAAGGCTTGAAGCGAGGGACCACGCTTCCAGCCTTACGACGAACGTGTCT
GATCAAATCTTAGCGCTGGTGTTGGGGCAATTCAATGCCACGGGTGAACG
GTATGAAGGTGGCATGGGGGAAAAGAAAGCACGATGCCAACCCCTGATGC
TGTCTGCTCCGGGTATTGAACCATCGTCATTGATGCTATGTTGTCCATGC
AGGTGTGTACGGAAGCGGGCAAGATAGCGGAAGGGCTTCAGGGGCAGAAA
CGCCTCGTTTTGGAGCATGCTGATACTATATACCCCCCACTGAGGTCTGG
TTCTGGGCGAAAATTGGAGTTGGAGGTGGGGTACTCGAACGAAGAAGATG
AAGAAGTGATCCTTTGTAAGGTGAGGCGATAAAAGCGAAGCCTGCTCTGT
GCCACAAGTTAAAGCGGTTGAATTTATAGAGGCACGTAGCCATATCCGGT
TGAAAAAATGGAAATGTAATCCTAGACGTTATTGGGGTTGATCCCCAAAT
TTTTACGAGAGACTGGCAAATCTCATCGCATGCACGTGCGCTGCTAAAAG
AAAGGACGGCTGAAAAAATTACCCTTTTTGCATCCTTTTGGTGCTTTTCC
AACGGAAAAACGTGGTAATGTAATGTATTATATCGCCTAAGAATACGGAA
TATAGCATATGTTACAACATAGTATACTTGAATATTAGTCATTACTCTGA
TATTCCCAAAAAACATGCCCCCGAACCAATGAACTTTGCCATGTAATATA
TATATATATATCTTTACTATGCGATAAAATTTGCAACCCTGCGCAGCTGT
TGCTAAGGAAAAATACATTCGCTGTTGCAGATCGCACCATGGCACACAGC
ATAGTGAGGTTGCGATCTATGCAACAATAGGGCTGCGGTGACGAACCGGG
TGCGAATAGCAAAAATGACGTGTTTGCTAGCAGCAGTCACCAGCCCCGAG
TCACGGGAGGATCCGATGGCAACGATGTGCGAACACGAAGAGATATGTTC
CATGTCATTGAAGAACCAGTGAATACAGCATATAGTCATTACATCGTGAA
TGCAGCACCGCTCGCTTCTTGTACTAGTGCAGTCAGTACACCGTATTCTA
TTGTACCGTACACACAGCAACTGCAGGTACGCCGGTAGAGCGTAGCCCAT
GGTCATTCAGCCCATCGGGAAAAGCTGTCTCTCAAATTGGCCTTGCAATG
GCGTGTTCGAGGTCGCATCGGTGCGTTCTCACCAAAACTCAGCCTGCCAG
AACGCACCCGGTATGTTTACAACGGGGAGAGGCGGGGCAATACAAAAAAA
AACTCGCTGTTGCAGATCGCACCCATTACCGTAGATGCTCGCACGTCGAG
CTTTGGCTATTTGGAGGGAGGGGGGGGGACTTCTTGCGCCTCTTCGATTA
CGCACGACAGGAACCACAGTAATCTTCTACCCCCCCGGACAAATACGAAT
ACTTGCGAATAGTTTTCATAAAAAACTGAAGGTATTCGCCTGAGTTCTAG
AATGAGCGGACACATAGAATGAAGTACCCACCCCTGTTTATTCGATTTAC
GAGTATTATTAGCAGTCATGGATGGTCCGGGGCACATAGAACACACGAGC
TTATTCGGAAACTCAGGCGAATTCTTTTCACTTTTTTTTTTATGAAAACC
ATTTGCAAATATTCGTATTTGTCCGGGGGGTGAAATCTTCACAAGGGAGT
AGACCTCATATGAATGACTAATCACAGACCTACGCCCGAACGGGTGGGGT
AGCTGGTGAACTGAGCATGACTGGAAGTGTAGTGAGAGGTCTTTTAGTGG
GTGCAACCCCTACCACTGCCTACTTGGTTCGGCCGAACCGGCGTGGCCTA
CGCCTACCCCGCAGAGGAATAAATAACTCTGTTCTGTTAAAGGAAATGTA
GAAATACTTCGGTAGAAATACTCAAGTATGGAAGCATCGGTAAAGGTTTT
TGCCTCAGCCTTCCGGGAGCTAAACAAAATGAACGACTAATACCATGAAA
TTGGAAACAACTCATTTTACTAACTGAAATGATTATTATTGTAGTAAATT
TTTTTTGACAAAGTCAGTTGAACTAAAACTGTGAACCTCGTATGATAACT
CTATTATACCTATGTTAGGGTAATGCGACCGATTTCAATCTGCAGTTGTA
GTATACATACTTATCGGCAAAATTTGATAATGACCAATAACCGGGGGAGA
GGGAACAGGTCGATGTTATTGTCCAATCCTAATGTAGGACCTCGTGTACT
CGTATAGGCCTGTTCGTTGATCTCGACCGCCTCACCAAGGCAACTCCGAA
AACATTTGGCATTCTGGTATCCTGGAGTATGACACTGGTTTGGGGAAATG
CCCAGCACTGGTGAATTGTCATGTAATGTTGACTGTTTGACTACCGGGAT
CTGTCGGCGATCTGATGGGTGCCTAAAACTGGGTGATAATGCAACGGTTA
TGAGTTTATTATGGTTGGATGATCATACGCTCTTTCGGTATGGAAGCATC
GGATAGATGTTTTTGCCTTAGCCTTCCGGGGGTTAAAAAATAAAATAAAT
GATCATACGCTGGTTATGATTCATGTATGTACAATTATCATGCTAACATG
GCGACATGATCGGCGACAGCTATATTTGTTTATTGATTGATTTTGCATCT
TTCAGACCCGGACAGACTTGGTCGGATTCGACCGACTGAGTTTCTAGTGT
CGAAGGGGATTTCTTATGAAGCTAGCTTTGCAAGAAGGGCTTTCGTATCT
CAAATCTTGCCCGCGCCGTCGTGTGCGTATAATAATGGAGAAGCACCGTT
CGCCCCTCTATTCCTAGGGCTGGCTTGATTTTTTTCAGTCCCTTGAGTAG
TCCCCTCTCGTTTGTTTTTCGTCAACTCGACCAAAGTCTCTTACACGCAA
TGCTTTATGTGAGAAGTGAATACGATGTGCACCAGATCCTTTTTGTTTGA
TAGCAACGAGGAGAAGATTGTCGCCGCAATCATCCATGCCCCCCCCCCCC
CTGTATGCATTTATTGGACGGAACCGGACATAAACGACACATGATACGTG
ACAGGCCAAATACTCGCGAGAAAAGGTGGGGATAGCCCTGGACCCTCTGC
CGAACGGGCCTTTCTTCCGAGACGTGGACCAGGCCGGCATGGGGAAGCTC
GTCGACAAGACAAGCGCCTCCAGCGTCAAGGGTCTCAAGTCGTGAGTTTG
GCTTTCTTTTATGGCATTTTTCTCCAACACAGTAGTTGCACTTGCTCAGA
TCCGCAGTTGGAGGATACAAATTCGAACAGGAAAAGCCGTTAAACACTAC
GAATGCAGTATTCACGGTTGGTTTCTCGTACTTATTCGTGTCAATTATTC
GTATTTGTTCGGGAGCGTTCGCAACTATCTCCAACTATCTATATTTGGGT
AAACATGTACTTATTCGTTTACAAGTCTACGAATGATCACTGTACAGATA
GTCACCAGGTGGTCGTATACCTGACGAACAGTCTCACATGCAGGTCCTGT
TTATTTTCCCGATGGTACTATACAGATTGAATATTTTGCCTGCCCGAGCT
TTACGATGCTCCATGGTATATCGAGTACACTGCATGCTATTTGCGCCTAT
GGGCATCTTCCCCAACTTAAACAAATACAGTATTCATTGCAGATTTCTCG
TAATTAGTCTTGTCTTGTTGTTCGTCCCGGAGGAGAAACATTTGCTGGTT
CTCCAACGCAGCCCCTGAACGAGAGCTCGAGTGCCTCTCGCGATGACTCT
GCACAATCTTCGTGTGCCACCTGCAGTGAGCCAAGCTCGGGGCTAAGTCA
CATTCCGACCAACTAGATGACCAACCACGGACCTACGCCCGAACGGGTAG
GGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGCCTTTTAG
TGGATGCAACCCCTACACTGCTCCTAGCCGAGCCGGGGTGGCGCCTACCC
TGCAGAGGAAACTCTGTTCTGTTAAAGGAAATGTAGACATGTTTGGGCGA
ATGCCTGGATGTGGAAGCAGCGGAAATGGTTTTTACCTCAGCCTTCCAGG
GGTTAAAAAACAAACAAAAACAAACTACACTGCCTACTTGGATCGGCCGA
ACCGGGGTTGCGCCTACCCCGCAGAGGAACAAATAACTCTGTTCTGTTAA
AGGAAATGTAGAAATACTTCGGTATGGAAACATCGGATAAAGGTTTTGCC
TTAGCCTTCGGGGGGTTAAAAAAACAAAGAAACGATGGCCAAAGACAAAA
TGGAGAATTTTCGCAGTGGAGCATTAGTTCATACTCATCTCTTGTTTTGT
CTCACCTTGGAACATCTCATGCCCAAAGCTGTTCTGTCTGTCGTCTGTGG
GCACTGCTCGACAGCGTTGACTGACCCAGCCATTGTACTTTCGGTCGTCT
GTTGAACCCGTTGCAGAAGGTAATGCCCAACATGAACGCCGGCCGCTGGA
TAGTCGTGACGTCATGGAAGCGGCATGCCGACATCTTGAATGGAACCTTC
TCATGGCGTGGTGTTCCGTGACTGATTTGACCTGGGGCATTATGATAGAG
GCACCTTGTACATTTTTATTTAGCGCGGCGCGAGACGATAGACATATAGT
TACGTCATGATATAGACCGTCTCGGACCGGACGGAGTTAGTCAGTGCAGG
TAAAGATGAAAATTCGTGTAGACAGGGACATGGGGCGGATGCAGGGCAAG
GGGAAGGAAGTGGCTAGCCATTGGCGAGTGACGGTAGCATGGTGACCAGA
CTCTTGCGTGTGGGCGCGTTGGCCAGCTTGAGAAGCAGTCGCTGCTGCGA
GTTCGCTGTGCGTAGAGACAGCTACTGCATACTCTCCGACAATGTCATTC
AGCACGCAATTGGTGTGGTGAGTTGTGGAGTGTGTGCAAGCACGTCAAGA
AGAGCAGGTGTTTCGTGACTTTTTGTAAGCGTCGGTACGTCCCAATGCAC
ATCGATACCTTCTCGGAGGATAAGGACGATACGTCGTATGCATCAATCAA
TCATGAAACGTTCGTAGTACCAGATAACTTGAAATGGACCATTCGGCGTG
TGCGGGCTTAGGAAGATGTCCCGTTTTCTTGTCGGCAGGTGGTTATCATC
CGGATGGTCGTTATTGAGGGAAAACTATGTGTAAGGTTCCAAGAATGTTT
CGCGTAGGGCATTGTAGAGCACACGCCGTCGCCCCTGCTTGTGCTTGGAA
CAAATCAAGGGTTTTGGATATGAATCACATGGCAACGACAAAGTGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig10173:2596..8741- >mRNA_H-paniculata_contig10173.141.1 ID=mRNA_H-paniculata_contig10173.141.1|Name=mRNA_H-paniculata_contig10173.141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig10173:2596..8741- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCTCAAGGAGTACAACATTCTCAGGAAGGCCGGGGGTGAGGTGGCGCG AGTGTACGCCAGGCTAAAGGGCACAGAACGCTGGTACCCCGTCGGACACA TGCTCAAGGAGTACAACATTCTCAGGAAGGCCGGGGGTGAGGTGGCGCGA GTGTACGCCAGGCTAAAGGGCACAGAACGCTGGTACCCCGTCGGACACGT GTGTACGGAAGCGGGCAAGATAGCGGAAGGGCTTCAGGGGCAGAAACGCC TCGTTTTGGAGCATGCTGATACTATATACCCCCCACTGAGGTCTGGTTCT GGGCGAAAATTGGAGTTGGAGGTGGGGTACTCGAACGAAGAAGATGAAGA AGTGATCCTTTGTAAGGTGTGTACGGAAGCGGGCAAGATAGCGGAAGGGC TTCAGGGGCAGAAACGCCTCGTTTTGGAGCATGCTGATACTATATACCCC CCACTGAGGTCTGGTTCTGGGCGAAAATTGGAGTTGGAGGTGGGGTACTC GAACGAAGAAGATGAAGAAGTGATCCTTTGTAAGGCCAAATACTCGCGAG AAAAGGTGGGGATAGCCCTGGACCCTCTGCCGAACGGGCCTTTCTTCCGA GACGTGGACCAGGCCGGCATGGGGAAGCTCGTCGACAAGACAAGCGCCTC CAGCGTCAAGGGTCTCAAGTCGCCAAATACTCGCGAGAAAAGGTGGGGAT AGCCCTGGACCCTCTGCCGAACGGGCCTTTCTTCCGAGACGTGGACCAGG CCGGCATGGGGAAGCTCGTCGACAAGACAAGCGCCTCCAGCGTCAAGGGT CTCAAGTCAAGGTAAAAGGTAA back to top
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