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Homology
BLAST of mRNA_H-paniculata_contig10171.139.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 7.110e-9 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 88 TGKSLSVICSALQWLKDAEARDIDDKAIVSSSSDTAGTDVGDSGGGGNTTGENGNV-----------SSTLPSWLRNYSKDKAKKEKDTRAKRVSEKRKEL 357
TGKSLSVICSALQWLKDAEA+D+D K+ S G T EN + +S +PSWL++ ++ K+ EK+ RAKRV E+R++L
Sbjct: 58 TGKSLSVICSALQWLKDAEAKDVDGKSDGGGSPARXXXXXXXXXXGFGT--ENASCGXXXXXXXXXGASAMPSWLKDMTRQKSDNEKEARAKRVRERRRDL 156
BLAST of mRNA_H-paniculata_contig10171.139.1 vs. uniprot
Match: A0A6H5KJU5_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU5_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.370e-8 Identity = 44/107 (41.12%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 91 GKSLSVICSALQWLKDAEARDIDDKAIVSSSSDTAGTDVGDSGGGGNTTGENGNV------------------SSTLPSWLRNYSKDKAKKEKDTRAKRVSEKRKEL 357
GKSLSVICSALQWLKDAEA+D+D K S GGG+ G +S +PSWLR+ ++ K+ EK RAKRV E+R++L
Sbjct: 5 GKSLSVICSALQWLKDAEAKDVDGK----------------SDGGGSPAGXXXXXXXXXXXXXXXXXXXXXXGASAMPSWLRDMTRQKSDNEKGARAKRVRERRRDL 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 64.3 |
| Seed ortholog evalue | 4.3e-08 |
| Seed eggNOG ortholog | 2880.D8LPY7 |
| Preferred name | CHL1 |
| KEGG ko | ko:K11273 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047 |
| EggNOG free text desc. | ATP-dependent DNA helicase activity |
| EggNOG OGs | COG1199@1,KOG1133@2759 |
| EC | 3.6.4.13 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03036 |
| Exons | 4 |
| Model size | 362 |
| Cds size | 354 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10171.139.1 >prot_H-paniculata_contig10171.139.1 ID=prot_H-paniculata_contig10171.139.1|Name=mRNA_H-paniculata_contig10171.139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MNDCHSCRSSWIVYVLRTGICDQRGCFTGKSLSVICSALQWLKDAEARDI
DDKAIVSSSSDTAGTDVGDSGGGGNTTGENGNVSSTLPSWLRNYSKDKAK
KEKDTRAKRVSEKRKELE back to topmRNA from alignment at H-paniculata_contig10171:5318..8538- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10171.139.1 ID=mRNA_H-paniculata_contig10171.139.1|Name=mRNA_H-paniculata_contig10171.139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3221bp|location=Sequence derived from alignment at H-paniculata_contig10171:5318..8538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGATATGAACGATTGCCATTCCTGCAGATCATCTTGGATCGTGTATGT
GCTTCGTACTGGCATCTGTGACCAACGCGGGTGTTTCACTGTGAGCTACG
AAACATCATCCAGGAGAACACGCCTGTGTATGTCGTTGAAGTCTCTTTTC
TTTTTTTTTCGCGGGGGTCTCATCCCCCAGTAAAACAGTGCGTTTTTTTT
TTCTCGGCGAGCTATCGATCCTCCCCGATCATTAAATTCGTGTTAAAAAG
TTGGTCTTTTTGACCCCATAAAATGATAAATGAAAAATCTCCCGTAAAAA
AATGGAATTTTATGATTTTGATTGGAGTTTTTTTACACCGTAAGAGGTGG
CCTCAGGTCGTTCTTCGATCAACGGCGAACTGATGCTCCATATTCTCGAA
TATTTTTCGCCTCGATGTACTGTCCCCCTGCTAGCTTTCGTGCCAGGCAA
AACAAGAAGTGTGTTTTCTTTCTGTGAGCCAGTGAATCACGTAATTGCTG
CTAATCAGTTTTCGACTTGTTGTCAAATCTCATTGTTCCACAATCATATT
CGTAAATTTGACCAGGGTAAGTCGTTGAGCGTGATCTGCAGTGCCCTCCA
ATGGCTCAAGGACGCGGAAGCCAGAGACATAGACGACAAAGCAATCGTTT
CGTCCTCTTCCGACACAGGTGAGTGCTCAATGTCTTATGTTGCGTCATGT
TCATGAAATTTTGATGTGACTATGTCAACGTTCACCTTTGGATTTTGTGC
GGGTTATCGCTTTTAGCCTCATGTCTTGTGTCGGGACAAAAAAGGACCTG
ATGGTCCCCCCGCTAACGAGGGGCGGGAGGCGTTCATCGGGGCGGGGGGA
GGAGCGTTTGGACTCTTGGTCCAGAATAAGATTAAATTATTTCCCAACGA
AACGGTAGCTTCAGGCCAATAGATGCAAAGGTTGGGTAAATAAAAATCGT
TTTTCATCCCACACATGAGCCGATTTGTTGAGTGATGTCTGGTCTTTATT
CAGTTAGATCTAATACCTGCCGAGGGTAAGGCCATCTCCTACGGTGTCAA
AAAAACTTCCAGTCAACACCATGAAATCCCAATTTTTTTACTGAGAAATA
GAATGATTGGGAAAAATTGATAGCTCATGTTATGGGGTCGGGCCTGAGTC
AAGAACATGAAATGTCAGTCGTTATGGTCACGCGAGGACGTGATTGTTTG
ATTCCATGCTGAGGTGTGTGGCATCGTGTGGTATATGCGTTGCTGCACAG
TCAGTCAACTAACTCAGCATATGGAGACATCTCGGTTTGGCTGGTAGCAG
ACTCAAAAAACAATTGCAGAGCTGACTCGAAATCCGCTTTTCGAAACAGA
AGGAACTTAAATTGTTCGGCGCTTGATAAGGCATGGTGTCTAGTCTTTTG
AGCACCATGACGTGGTCATGTGTATGGCTGACAGCTGTTTGTGTATATCA
TTCAAATGAAAAAGTACTGTCGCTCTGGGAAAATTGATAAGTAGCGCCGA
AGGGGTTGAAAAAATAGCAATAGTACGGTTCATTTCAACTCTGGGAGTGA
CCTTCAATTTTCTCCAACTGAAATTGTATAATACGAACTCCTCTTGCCGA
AATTCATGCAGGCTGACAACAATAGTGCGATTAGCTTGCGACGCTGCGTG
AGTCGCGCGACAACTTTCCCAATATTCCTGTACCTCATACTTTGACGTAT
ATATCACCTCTTTGTGTTGTCGATTTCCATGTTGAATTGTATCTGCCGGT
CATTCATGCGTCGGTTGCTCTGCACGTCAAATACATTATTGTTCGATTTT
TACTCTCTCCTTTACTCTTGAGCTGTGACAAAATACAACATTTTGGGTCT
TCCGTCTCATCCCTTTCCCCTTTAGCTGGCACGGATGTCGGAGACAGCGG
AGGCGGCGGGAATACTACTGGCGAAAACGGAAATGTTAGCAGTACCTTGC
CAAGCTGGTTGCGCAACTACTCCAAAGACAAGGCAAAGAAAGAGAAAGAC
ACAAGGGCAAAGTGAGCTAAGGGAGGGGAGAACCCGGTTGCACATGGCGC
CTGCGAAGCGGTCCGTTGTATATTCTTTTCGTATTGCTGGAAAATTGGTA
GTTGGGCTACGGCTGCTCCGAGAAAGCAGCTATCAGGGAGAAAGTTGCCA
AGGTCGTCATAGTACAGCACGTATACCCGATGGATACTTGCAAGGTACTG
GCAGTGTCCAGTGGTGAGAGTGTGTACGTACTCAGTGCCATTCGATCCCT
TATTCAAAATATTGGATGTATGTCCAGTATCCCCTAGTTAGATACTAGGA
TGACCAAGAATGGCCAGAATAAACCAAATACTAAAAGCATCTCCGGAATC
CACCAGTATAAACTCCTAAAAACGACACCGCACATCTTCAGTATTTCCTA
GATAATTACTGGCGATATTGAATCATGCCACTATTTAGCCAGAAAATACC
GAGTACATGGCCAGTATCGTCAGTACATATCCCAAAACTACCGGCTAGCT
ACAGTATCTCCCAGTGCTAGAGTCAGTAAAAATTCCAAAATGACCCCGTA
CATCTCCAATACCACCAGTGTTTACTCCCAAAATACTGCCACTGCCACTG
CGAGTGCACTGTACTGTACTGTATGGCGACGACCTTCGGCAAGTTACGAC
AATACCGTTACATCCCGTATCCTTATTTATGAAGGTAATACCGTCGTGAT
GTCGATTTGGAACAGTTTCAAGTCTGTACGCAAGTAATTCTACGTACATG
ATCTTTTTCGCTTAGGCAACAAGCCGTTGTGCGTGAGCCGAGGACAAAGC
ACAGGATGGAGTATTACAATGAGTTAGCGTAGCCGTGGCTCTACCAGTAG
TTAATATGTATAGTAATACTTTTTTTCCTGAGGTGGAGAAAAGGAGTGGA
TTGAAGCTTGACACGTGCTTCTGTAGAATATCGTACGATACGCCAGAGAG
CATCACGTATGTGCTACTGCGTATTCTACCGTGAGCGCATAGTCAGGAAG
GGAAATTCGCCTTTCGCTATCGCCCTAATAGATTTTGTACAAGTTCCGAA
TACGCATATCCAACAGATATAGCACGTGTAATGCCCCTATAGCACGTGTA
ATGCCCCACCCCGCTCCTCTACCTTTTCACCCTTCCCCTGGTTCATTTAA
CACCTTCAACGTGTCGGGAATACGCTCCAACTCACGCCAGGCGTGTGAGC
GAGAAACGAAAGGAATTGGAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10171:5318..8538- >mRNA_H-paniculata_contig10171.139.1 ID=mRNA_H-paniculata_contig10171.139.1|Name=mRNA_H-paniculata_contig10171.139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig10171:5318..8538- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGATTGCCATTCCTGCAGATCATCTTGGATCGTGTATGTGCTTCG
TACTGGCATCTGTGACCAACGCGGGTGTTTCACTATGAACGATTGCCATT
CCTGCAGATCATCTTGGATCGTGTATGTGCTTCGTACTGGCATCTGTGAC
CAACGCGGGTGTTTCACTGGTAAGTCGTTGAGCGTGATCTGCAGTGCCCT
CCAATGGCTCAAGGACGCGGAAGCCAGAGACATAGACGACAAAGCAATCG
TTTCGTCCTCTTCCGACACAGGGTAAGTCGTTGAGCGTGATCTGCAGTGC
CCTCCAATGGCTCAAGGACGCGGAAGCCAGAGACATAGACGACAAAGCAA
TCGTTTCGTCCTCTTCCGACACAGCTGGCACGGATGTCGGAGACAGCGGA
GGCGGCGGGAATACTACTGGCGAAAACGGAAATGTTAGCAGTACCTTGCC
AAGCTGGTTGCGCAACTACTCCAAAGACAAGGCAAAGAAAGAGAAAGACA
CAAGGGCAAACTGGCACGGATGTCGGAGACAGCGGAGGCGGCGGGAATAC
TACTGGCGAAAACGGAAATGTTAGCAGTACCTTGCCAAGCTGGTTGCGCA
ACTACTCCAAAGACAAGGCAAAGAAAGAGAAAGACACAAGGGCAAAGCGT
GTGAGCGAGAAACGAAAGGAATTGGAAGCGTGTGAGCGAGAAACGAAAGG
AATTGGAA back to top
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