mRNA_H-paniculata_contig1016.133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1016.133.1
Unique NamemRNA_H-paniculata_contig1016.133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9)

HSP 1 Score: 79.0 bits (193), Expect = 2.160e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 TTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            T L  DNKSAI L      H RTK+IE R+H +RE V+DG +A+ Y+ TG+QLAD++TK + R+KFQ  R  L
Sbjct: 1352 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKALPRVKFQELREKL 1424          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: A0A453SJJ3_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SJJ3_AEGTS)

HSP 1 Score: 77.4 bits (189), Expect = 4.230e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    7 TTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            T L  DNKSAI L      H RTK+IE R+H +RE V+DG + + Y+ TG+QLAD++TK + R+KFQ  R  L
Sbjct:  251 TPLLIDNKSAIQLCKNPVFHDRTKHIETRFHFIRECVQDGRIVVDYIHTGEQLADIMTKALPRVKFQELREKL 323          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: A0A7H4LDI7_WHEAT (Genome assembly, chromosome: II n=2 Tax=Triticinae TaxID=1648030 RepID=A0A7H4LDI7_WHEAT)

HSP 1 Score: 76.3 bits (186), Expect = 1.910e-14
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 GSTTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRR 216
            G+TT+F DNKSAI L      H R+K+I+VR+H +R+ V +G + +K++ TGDQLAD+ TK + R +FQ+ R
Sbjct: 1216 GATTIFIDNKSAIQLCKNPVCHDRSKHIDVRFHFIRKCVEEGKIRVKHIATGDQLADIFTKSLGRTRFQQLR 1287          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: A0A4Y9YHS6_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YHS6_9AGAM)

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 GSTTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQ 207
            G T L  DN+SA+ ++     H RTK+I+VR H +RE V +GIL L+YV TG+Q+ADVLTKG+ R K +
Sbjct: 1348 GPTILLMDNQSAMAIARNPAFHARTKHIDVRHHFLREKVEEGILDLEYVPTGEQVADVLTKGLPREKHE 1416          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: UPI001ABC3E10 (secreted RxLR effector protein 161-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC3E10)

HSP 1 Score: 72.0 bits (175), Expect = 1.840e-13
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   13 LFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRR 216
            L  DNKSAI++S     H R+K+IE+ +H +RE V +G + +++VQ+GDQLADVLTK + R+K Q +R
Sbjct:  165 LNVDNKSAISVSKNPVYHDRSKHIEIWYHFIRECVENGKIQIEFVQSGDQLADVLTKALGRVKLQEQR 232          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C)

HSP 1 Score: 71.2 bits (173), Expect = 2.030e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   13 LFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            LF DN+SAI +     +H RTK+I+VR+H +RE    G++  KYV T +QLAD+LTK ++  +FQR R  L
Sbjct:  130 LFMDNQSAIRIIRNPELHQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLRQEL 200          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: UPI0020182CB6 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=UPI0020182CB6)

HSP 1 Score: 72.8 bits (177), Expect = 2.050e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 STTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            ST LF DN SAI+L+  +  H RTK++EV +H +RE V  G + ++Y +TGDQ+AD+ TKG+   KF   R  L
Sbjct:  241 STILFCDNLSAISLAENTVFHARTKHVEVHYHFLREKVLQGEIKMEYTKTGDQVADIFTKGLGAAKFDEFRTQL 314          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: A0A409WC63_9AGAR (Uncharacterized protein n=2 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WC63_9AGAR)

HSP 1 Score: 72.8 bits (177), Expect = 3.160e-13
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   10 TLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            TL+ DN+ AI LS     H RTK+I+V++H  R+ +R GI+ L+YVQT DQ+AD+ TK + R+K ++ R  L
Sbjct: 1196 TLWCDNQGAIQLSNNPVFHMRTKHIDVQFHYTRQVIRRGIVKLEYVQTEDQVADIFTKALGRVKLEKFRGML 1267          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: UPI001E1CA5CE (uncharacterized protein LOC120969904 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA5CE)

HSP 1 Score: 72.8 bits (177), Expect = 3.170e-13
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   13 LFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKF 204
            L  DNKSAI+LS     H R+K+IE+R+H +RE V +G + + YV T DQLADVLTK + R+KF
Sbjct: 1292 LLVDNKSAISLSKNPVFHDRSKHIEIRYHFIRECVEEGRIDINYVCTNDQLADVLTKALGRLKF 1355          
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Match: A0A4Y2H1X2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H1X2_ARAVE)

HSP 1 Score: 72.0 bits (175), Expect = 4.630e-13
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   10 TLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQTGDQLADVLTKGVSRIKFQRRRNYL 225
            TLF DN+SAI L      H RTK+I+VR+H +RE   DG + +KYV++ +QLAD+ TK + ++KF++ R  L
Sbjct:  279 TLFVDNQSAIKLIKNPVFHKRTKHIDVRYHFIREKCDDGSVNIKYVKSEEQLADIFTKALPKVKFEKLRELL 350          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1016.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1CA6F92.160e-1552.05LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A453SJJ3_AEGTS4.230e-1550.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7H4LDI7_WHEAT1.910e-1448.61Genome assembly, chromosome: II n=2 Tax=Triticinae... [more]
A0A4Y9YHS6_9AGAM1.700e-1352.17Integrase catalytic domain-containing protein n=1 ... [more]
UPI001ABC3E101.840e-1350.00secreted RxLR effector protein 161-like n=1 Tax=Ae... [more]
UPI001E1BA65C2.030e-1347.89secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI0020182CB62.050e-1347.30uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A409WC63_9AGAR3.160e-1347.22Uncharacterized protein n=2 Tax=Panaeolus cyanesce... [more]
UPI001E1CA5CE3.170e-1354.69uncharacterized protein LOC120969904 n=1 Tax=Aegil... [more]
A0A4Y2H1X2_ARAVE4.630e-1347.22Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1016contigH-paniculata_contig1016:18774..19004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.0
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog4513.MLOC_79484.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928722.8767521-CDS-H-paniculata_contig1016:18773..190041622928722.8767521-CDS-H-paniculata_contig1016:18773..19004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1016 18774..19004 +
1691480594.7109022-CDS-H-paniculata_contig1016:18773..190041691480594.7109022-CDS-H-paniculata_contig1016:18773..19004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1016 18774..19004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1016.133.1prot_H-paniculata_contig1016.133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1016 18774..19004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1016.133.1

>prot_H-paniculata_contig1016.133.1 ID=prot_H-paniculata_contig1016.133.1|Name=mRNA_H-paniculata_contig1016.133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
GSTTLFKDNKSAINLSTGSGVHCRTKYIEVRWHGVREWVRDGILALKYVQ
TGDQLADVLTKGVSRIKFQRRRNYLM*
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mRNA from alignment at H-paniculata_contig1016:18774..19004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1016.133.1 ID=mRNA_H-paniculata_contig1016.133.1|Name=mRNA_H-paniculata_contig1016.133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig1016:18774..19004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCACGACATTATTTAAGGACAACAAGTCAGCTATCAATCTCAGTAC GGGATCTGGCGTACACTGCAGGACAAAGTACATCGAGGTGCGCTGGCACG GAGTTCGAGAGTGGGTTCGGGACGGAATATTGGCGTTGAAATACGTGCAG ACCGGCGACCAACTTGCTGACGTTTTAACGAAAGGAGTGAGCAGAATAAA GTTTCAGAGACGGAGAAACTATCTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1016:18774..19004+

>mRNA_H-paniculata_contig1016.133.1 ID=mRNA_H-paniculata_contig1016.133.1|Name=mRNA_H-paniculata_contig1016.133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig1016:18774..19004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCACGACATTATTTAAGGACAACAAGTCAGCTATCAATCTCAGTAC
GGGATCTGGCGTACACTGCAGGACAAAGTACATCGAGGTGCGCTGGCACG
GAGTTCGAGAGTGGGTTCGGGACGGAATATTGGCGTTGAAATACGTGCAG
ACCGGCGACCAACTTGCTGACGTTTTAACGAAAGGAGTGAGCAGAATAAA
GTTTCAGAGACGGAGAAACTATCTCATGTGAGGGAGCACGACATTATTTA
AGGACAACAAGTCAGCTATCAATCTCAGTACGGGATCTGGCGTACACTGC
AGGACAAAGTACATCGAGGTGCGCTGGCACGGAGTTCGAGAGTGGGTTCG
GGACGGAATATTGGCGTTGAAATACGTGCAGACCGGCGACCAACTTGCTG
ACGTTTTAACGAAAGGAGTGAGCAGAATAAAGTTTCAGAGACGGAGAAAC
TATCTCATGTGA
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