mRNA_H-paniculata_contig10159.131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10159.131.1
Unique NamemRNA_H-paniculata_contig10159.131.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10159.131.1 vs. uniprot
Match: A0A6H5KCH7_9PHAE (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCH7_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.140e-67
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 1 
Query:   25 QLRAIDKSIALSVPPCADSSASTPLSTTSPSSPPKPFKKGLLLIGGFGDPPHVWEGLAERASLAGWYTLAPRTPGWGRTDFHEANHVSWTDWVLAARDGLAAVRGLCEEVTVVAHSTGAPVAAIVAESFPIETLVFTGPNFVSNPSDLW 471
            QLRA+DKSIALSVPP    +A+TP +  +     KPF+KGL+LIGGFGD P +WEGLAERAS AGWYTLAPRTPGWGRTDF EAN V WTDWVLA RDGLA  RGLC+EVTVVAHSTGAPVAA+VAE+ PI+ L+FTGPNF+S   D W
Sbjct:   59 QLRALDKSIALSVPPLPPPTAATPGAARAVLPRKKPFEKGLVLIGGFGDMPCMWEGLAERASKAGWYTLAPRTPGWGRTDFREANKVCWTDWVLACRDGLAVARGLCDEVTVVAHSTGAPVAALVAETQPIDRLIFTGPNFLSQAGDRW 207
[Close]
BLAST of mRNA_H-paniculata_contig10159.131.1 vs. uniprot
Match: UPI0019BD8CF5 (Alpha/beta fold hydrolase n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI0019BD8CF5)

HSP 1 Score: 55.5 bits (132), Expect = 4.390e-6
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:  145 LLLIGGFGDPPHVWEGLAERASLAGWYTLAPRTPGWGRTDFHEANHVSWTDWVLAARDGLAAVRGLCEEVTVVAHSTGAPVAAIVAESFP-IETLVFTGPNFVSNP 459
            +LL+ GFGD P   E +A   +  G+   AP  PG GRT     N     +W+ AAR+  AA+RG    V V+  S G  +  I+A   P +  LV   P +VS P
Sbjct:   73 VLLLHGFGDTPRTLEYIARALADTGYTVHAPLLPGHGRT-IASFNGTHGKEWISAAREAYAALRGTHPSVAVMGLSMGGALGIILAADEPDLPALVVVAP-YVSMP 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10159.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCH7_9PHAE1.140e-6772.48AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
UPI0019BD8CF54.390e-636.79Alpha/beta fold hydrolase n=1 Tax=Steroidobacterac... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10159contigH-paniculata_contig10159:362..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog1485543.JMME01000014_gene281
Preferred nameest
KEGG koko:K03928
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs1TQ7X@1239,4H3ZP@909932,COG1647@1,COG1647@2
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-12_005570.1
EC3.1.1.1
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size474
Cds size474
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928722.8062449-CDS-H-paniculata_contig10159:361..5391622928722.8062449-CDS-H-paniculata_contig10159:361..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10159 362..539 -
1691480594.6856904-CDS-H-paniculata_contig10159:361..5391691480594.6856904-CDS-H-paniculata_contig10159:361..539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10159 362..539 -
1622928722.8216357-CDS-H-paniculata_contig10159:1217..15131622928722.8216357-CDS-H-paniculata_contig10159:1217..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10159 1218..1513 -
1691480594.700413-CDS-H-paniculata_contig10159:1217..15131691480594.700413-CDS-H-paniculata_contig10159:1217..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10159 1218..1513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10159.131.1prot_H-paniculata_contig10159.131.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10159 362..1513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10159.131.1

>prot_H-paniculata_contig10159.131.1 ID=prot_H-paniculata_contig10159.131.1|Name=mRNA_H-paniculata_contig10159.131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MPNNNRNDQLRAIDKSIALSVPPCADSSASTPLSTTSPSSPPKPFKKGLL
LIGGFGDPPHVWEGLAERASLAGWYTLAPRTPGWGRTDFHEANHVSWTDW
VLAARDGLAAVRGLCEEVTVVAHSTGAPVAAIVAESFPIETLVFTGPNFV
SNPSDLW*
back to top

mRNA from alignment at H-paniculata_contig10159:362..1513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10159.131.1 ID=mRNA_H-paniculata_contig10159.131.1|Name=mRNA_H-paniculata_contig10159.131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig10159:362..1513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAATAATAACAGAAACGACCAGCTGCGCGCCATCGATAAATCGAT
TGCGCTGTCGGTACCCCCGTGTGCTGATTCGTCGGCATCTACTCCTCTGT
CGACAACCTCGCCTTCGTCACCTCCGAAACCATTCAAGAAAGGCCTGCTA
CTGATCGGGGGCTTCGGAGACCCCCCTCATGTCTGGGAAGGGTTGGCAGA
GCGAGCTAGCCTCGCAGGATGGTATACGCTGGCGCCCAGGACTCCCGGCT
GGGGGAGGACCGACTTCCACGAGGCGAACCACGTCTCCTGGACGGAGTGA
GTTGACTGGAGGCGTTTCTTGTTTGGGGCGGGGGCGGGGCCTAGGGGGGG
GGAGTCTTTTGAAAAAATGAAAACACAGGGACAATTTTTTTACCCTAGTG
AACTGATTGCTGGATTATCGGCAGTACTCAGAGCCTGCTGCGTGCTGCTG
TGTTGTATGTACAGTGATTATTTGGGCTGACTGTGTGAAGGAGGCTTGGG
AAGTTGAAGGTCGCAAGTCGTGCAACCATCAGCACAAATATGTCGTGTTA
TTATGGATTATTTAGTTTGGAGAAGGATTGTGTGACAACCTATATAGGTG
TTTTACATGTTTATTTGAGAATGCTTCTTTCCCGTGCTATTTAATGCCTG
GCATGCTGTTTGTTTTTTTACGTACGTACGTGTTGCGTTGTTCTATGTTG
TGTGGTATAGAATGAAGTTTTTTTAATTTCTGCTTCTCTATATTTCCATC
GCCGCACAGTCGTACTGCAGGTGTACTAGACCTATTCTCATTGCTTTTCG
GTAAAAGTACAAGAACAACTTTTTTCACCTCCCTCCTGCTAAGCTCCGTC
CTCCCGAAGACGCGTGGTCACCGGTCGAGCAACTGCTGCAAACACGACAT
AAATACCCCCTCACCCCCATGCGTTGCATTCAAACTGTTGCGTGTGTGTG
TGCGCGCGCGCTGGCGCGATGCAGTTGGGTCTTGGCGGCGCGCGACGGAC
TGGCAGCAGTTCGAGGATTGTGCGAGGAAGTGACCGTGGTCGCGCACAGC
ACCGGAGCGCCGGTGGCGGCGATCGTGGCGGAGTCGTTTCCTATAGAGAC
ACTTGTCTTCACGGGACCCAATTTCGTGTCCAACCCGAGTGATTTATGGT
GA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10159:362..1513-

>mRNA_H-paniculata_contig10159.131.1 ID=mRNA_H-paniculata_contig10159.131.1|Name=mRNA_H-paniculata_contig10159.131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig10159:362..1513- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAATAATAACAGAAACGACCAGCTGCGCGCCATCGATAAATCGAT
TGCGCTGTCGGTACCCCCGTGTGCTGATTCGTCGGCATCTACTCCTCTGT
CGACAACCTCGCCTTCGTCACCTCCGAAACCATTCAAGAAAGGCCTGCTA
CTGATCGGGGGCTTCGGAGACCCCCCTCATGTCTGGGAAGGGTTGGCAGA
GCGAGCTAGCCTCGCAGGATGGTATACGCTGGCGCCCAGGACTCCCGGCT
GGGGGAGGACCGACTTCCACGAGGCGAACCACGTCTCCTGGACGGAATGC
CAAATAATAACAGAAACGACCAGCTGCGCGCCATCGATAAATCGATTGCG
CTGTCGGTACCCCCGTGTGCTGATTCGTCGGCATCTACTCCTCTGTCGAC
AACCTCGCCTTCGTCACCTCCGAAACCATTCAAGAAAGGCCTGCTACTGA
TCGGGGGCTTCGGAGACCCCCCTCATGTCTGGGAAGGGTTGGCAGAGCGA
GCTAGCCTCGCAGGATGGTATACGCTGGCGCCCAGGACTCCCGGCTGGGG
GAGGACCGACTTCCACGAGGCGAACCACGTCTCCTGGACGGATTGGGTCT
TGGCGGCGCGCGACGGACTGGCAGCAGTTCGAGGATTGTGCGAGGAAGTG
ACCGTGGTCGCGCACAGCACCGGAGCGCCGGTGGCGGCGATCGTGGCGGA
GTCGTTTCCTATAGAGACACTTGTCTTCACGGGACCCAATTTCGTGTCCA
ACCCGAGTGATTTATGGTGATTGGGTCTTGGCGGCGCGCGACGGACTGGC
AGCAGTTCGAGGATTGTGCGAGGAAGTGACCGTGGTCGCGCACAGCACCG
GAGCGCCGGTGGCGGCGATCGTGGCGGAGTCGTTTCCTATAGAGACACTT
GTCTTCACGGGACCCAATTTCGTGTCCAACCCGAGTGATTTATGGTGA
back to top