mRNA_H-paniculata_contig10151.126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig10151.126.1
Unique Name	mRNA_H-paniculata_contig10151.126.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig10151.126.1 vs. uniprot
Match: D8LFX7_ECTSI (Phosducin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFX7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.590e-33
Identity = 66/79 (83.54%), Postives = 74/79 (93.67%), Query Frame = 1

Query:    1 QDILIKKGIVEKDDVLRGKGIDPDEQRLEKAISKAREEEVDRINSRTIEDDMRDASLEELDDLEDDLADDGMLEKYREQ 237
            +DILIKKGIVEKDDVLRGKG DPDEQRLE+AI KARE EV+R+N+RTIEDDM +ASLEELD+LED+LADDGMLEKYR Q
Sbjct:   19 EDILIKKGIVEKDDVLRGKGFDPDEQRLEEAIGKAREAEVERLNARTIEDDMAEASLEELDELEDELADDGMLEKYRAQ 97

[Close]

BLAST of mRNA_H-paniculata_contig10151.126.1 vs. uniprot
Match: A0A835YNU3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.290e-14
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 1

Query:    4 DILIKKGIVEKDDVLRGKGIDPDEQRLEKAISKAREEEVDRINSRTIEDDMRDASLEELDDLEDDLADDGMLEKYREQVR 243
            DILI+KGI+ +D+VLR KG+DPDE RL++A+++AREE   R  S T+ D + + SL+ELD LEDD ADD   E+  +++R
Sbjct:   20 DILIRKGILTRDEVLRNKGVDPDELRLQEAVAEAREELAQRNASMTLTDKLAEKSLDELDALEDDFADDDGEEEILQRLR 99

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig10151.126.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig10151.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFX7_ECTSI	6.590e-33	83.54	Phosducin domain-containing protein n=2 Tax=Ectoca...	[more]
A0A835YNU3_9STRA	4.290e-14	52.50	Thioredoxin-like protein n=1 Tax=Tribonema minus T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig10151	contig	H-paniculata_contig10151:6738..9033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	125.2
Seed ortholog evalue	1.6e-26
Seed eggNOG ortholog	2880.D8LFX7
Preferred name	PDCL3
Hectar predicted targeting category	other localisation
GOs	GO:0001932,GO:0001936,GO:0001938,GO:0003674,GO:0003779,GO:0005102,GO:0005126,GO:0005172,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006457,GO:0006725,GO:0006807,GO:0007329,GO:0008092,GO:0008150,GO:0008152,GO:0008284,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009371,GO:0009373,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010941,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019236,GO:0019438,GO:0022603,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031683,GO:0032268,GO:0032269,GO:0034404,GO:0034641,GO:0034654,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042455,GO:0042981,GO:0043067,GO:0043184,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0044183,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045765,GO:0045766,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0046019,GO:0046116,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050679,GO:0050730,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0080090,GO:1901135,GO:1901137,GO:1901342,GO:1901360,GO:1901362,GO:1901522,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1904018,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000116,GO:2001141
EggNOG free text desc.	queuosine biosynthetic process
EggNOG OGs	KOG3170@1,KOG3170@2759
Ec32 ortholog description	Phosducin, thioredoxin-like domain
Ec32 ortholog	Ec-05_005120.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	267
Cds size	267
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928722.4083378-CDS-H-paniculata_contig10151:6737..6833	1622928722.4083378-CDS-H-paniculata_contig10151:6737..6833	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10151 6738..6833 +
1691480594.4970036-CDS-H-paniculata_contig10151:6737..6833	1691480594.4970036-CDS-H-paniculata_contig10151:6737..6833	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10151 6738..6833 +
1622928722.4231465-CDS-H-paniculata_contig10151:8862..9033	1622928722.4231465-CDS-H-paniculata_contig10151:8862..9033	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10151 8863..9033 +
1691480594.5090551-CDS-H-paniculata_contig10151:8862..9033	1691480594.5090551-CDS-H-paniculata_contig10151:8862..9033	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10151 8863..9033 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10151.126.1	prot_H-paniculata_contig10151.126.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10151 6738..9033 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10151:6738..9033+
coding sequence from alignment at H-paniculata_contig10151:6738..9033+

protein sequence of mRNA_H-paniculata_contig10151.126.1

>prot_H-paniculata_contig10151.126.1 ID=prot_H-paniculata_contig10151.126.1|Name=mRNA_H-paniculata_contig10151.126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
QDILIKKGIVEKDDVLRGKGIDPDEQRLEKAISKAREEEVDRINSRTIED
DMRDASLEELDDLEDDLADDGMLEKYREQVRYFFSFFF*

mRNA from alignment at H-paniculata_contig10151:6738..9033+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10151.126.1 ID=mRNA_H-paniculata_contig10151.126.1|Name=mRNA_H-paniculata_contig10151.126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2296bp|location=Sequence derived from alignment at H-paniculata_contig10151:6738..9033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCTTGATCAAGAAAGGCATTGTCGAGAAGGATGATGTGTTGAG
GGGGAAGGGCATCGATCCGGACGAACAGCGGCTAGAGAAGGCAATCGTGA
GTTGCCACAAGAAAGAGAATATATATATATATATATTTATATATTCGCCA
AGTTGTGAAAATGAGGATAGCTGACTGTTCTTGACAAACGTTGGGCCTTC
AAGGTGTTCTAGGTGGCCACCACGAAGTAGGATGTTTGCGCATAATGACT
ACCACTAAAAAAAAAAGTGCTCGTAAGCATTTTGTCCTGCAGTGGCTTCG
CGGTCAGATGTGAACAAGAAATATAACTTGCGAGTGTAGCTGAAAATTAC
GTTTTTTTTCGTCTTATTTTAGTATGGGACCTTGTCTAAACTTTGACCTG
TAGGTTTTCCTTTGAAGCGGTCACTTTGTGCATGTGTCCGGAGTGTGACG
AATAAAGCTGCGAGGTCCGTTATCAGGTACGTGTGGACCGAACGTGGACC
TACGCTCGTTTCCGGTACGTCCAATTGAGCCCACGAACGACTGCTGAGTC
CGTCCCCTGTATTGGAAGGACTCCAAACCACTATTTTAGGTGGACGTATG
TAAGGTACACACCTACCTGAGGTATTGCAGTGAGTGAGGTCCTTTACCTT
GAAGTTGCTCAATGCCTCTTTCCCTGGCATTTTGATTCATAGCAGTATAG
GGACCCATAGTTGGGTGAGGTATAACGTACTTATCGTGAACAAATATGTG
TCGGTGAAGTATAAGACATGCCCCCCCCCCCCCTGATACCGTGTATGGTC
CGCTATATAGGGCCACCTACTGACTGTTGCGCGCTACGGGGTGCTGCAAT
GTATCTACCCGTTAGACGCAGCGACACGTTTTGGAACATGACGAGATTGC
AGAATTTGTCACGAAATCTAATAAAAATAGTAGCCATGATTACCTCCGTG
ACCCTCTCAAGGCCAAGGGGGTATCGGGTGAAAATCAGGATTCTACATCT
GTCCAGTAGTGGCTCGCTGATCTAGCCGGTCTTGCAGGCTGCAAAATCCC
CAACGGTGGCAAAATTCCTTGCGGGCCAACCTGCCACTGGCAAAATTCCC
ACAGGACCAACCAGGCACCATGGTGGCTGCTGACCTGTCATTGGCCATGG
ACAGGTGTGCCTGACAGGCTCAACTATCGGACAGGATGTAGAGTCCTGGT
GAAAACTAAGGCTTTTCACAAGAGTACGGGACGCTCTCGGAGATCGACAG
GAGGAGATCCTGCGCCGCCTCGTCATGTTTGTGGAGAACTACAGTAGGAC
TAGAACTCGCCCCACCTTGTCCCTATTTCCCATGAGAACGTTCCGTCCCG
TAGATCCTGTCCTGTCTTGTTCGGTCAAAATATATGTTGCTCTTTCCCAT
CTTATCCCACCCCATGTCGTAGGTCACGGGACCCGTTCATGTATGAAGTA
AGGGTCCAGTCTCGTAGGTCACGGGACGCATCCATTTATCAAGTCAAGGT
CCTGTCCCATCTCGTTCGGTTAAAATACATGTTGCCCTTCCCTGTCTCGT
CCAGTCCCGTAGGTCACGGGCTCCACCCATTTATCAAGTAAAGGCTCTGT
CCCGTCCCGTTCTCTCGATAAAAAACCTTGTAAAAAAGACAATACAGGAG
GTACAACAGGATGCGTAAAAGCTTAAAATTTGTCCGGGCGGCCTAGATTC
AACACCACGGAGTTGCTTACAAATGCTGCATGCACTCAAAAGAAGAATTT
GATGTATGAATTTTACTCGTGTTTCAATATTTAGTACCTGGTACCTGGTC
GCTATTTTTGGCGTGTTTTTTTAATGTAAAACCTACTGTAGTAGGCAAGG
CCACAGCTGAAATAGGCCGGTGGTGAGCGTGACACTTTTTTGTTTTTTTT
AACGTTTTCATATTTGAAGAGTGGAAAACTGAAGTCCTACTAAAACAATC
TGGATCATGACATCATTATCATGAGTAAAAAAAAAAAAAACAGGATTTGA
AAAAGTCTGTTGCCGCCTCTGTTGCAGCTATATCTGCTGATTTCAGCTGA
TTTATTTCGCCGTCGTCTTTTTTTTCTTTCAACTCCCCTCCCTGAAACCC
GCTCCCTCTCCCTGCTCCCCCGCAGAGCAAGGCGAGAGAGGAAGAAGTGG
ACAGGATAAACTCGAGGACGATCGAGGATGACATGCGGGATGCCTCTCTG
GAAGAGTTGGATGATCTGGAGGATGACCTTGCAGACGACGGTATGCTCGA
GAAGTACAGGGAGCAGGTACGGTACTTTTTTTCTTTCTTTTTTTAA

Coding sequence (CDS) from alignment at H-paniculata_contig10151:6738..9033+

>mRNA_H-paniculata_contig10151.126.1 ID=mRNA_H-paniculata_contig10151.126.1|Name=mRNA_H-paniculata_contig10151.126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig10151:6738..9033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCTTGATCAAGAAAGGCATTGTCGAGAAGGATGATGTGTTGAG
GGGGAAGGGCATCGATCCGGACGAACAGCGGCTAGAGAAGGCAATCCAGG
ACATCTTGATCAAGAAAGGCATTGTCGAGAAGGATGATGTGTTGAGGGGG
AAGGGCATCGATCCGGACGAACAGCGGCTAGAGAAGGCAATCAGCAAGGC
GAGAGAGGAAGAAGTGGACAGGATAAACTCGAGGACGATCGAGGATGACA
TGCGGGATGCCTCTCTGGAAGAGTTGGATGATCTGGAGGATGACCTTGCA
GACGACGGTATGCTCGAGAAGTACAGGGAGCAGGTACGGTACTTTTTTTC
TTTCTTTTTTTAAAGCAAGGCGAGAGAGGAAGAAGTGGACAGGATAAACT
CGAGGACGATCGAGGATGACATGCGGGATGCCTCTCTGGAAGAGTTGGAT
GATCTGGAGGATGACCTTGCAGACGACGGTATGCTCGAGAAGTACAGGGA
GCAGGTACGGTACTTTTTTTCTTTCTTTTTTTAA