mRNA_H-paniculata_contig10149.123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10149.123.1 vs. uniprot
Match: D7FNN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN6_ECTSI) HSP 1 Score: 271 bits (693), Expect = 1.370e-82 Identity = 181/370 (48.92%), Postives = 228/370 (61.62%), Query Frame = 3 Query: 291 RTVSEYAPAPPSPNDLKAPLPEKFSVGKNNKLKAILFEYDILARSGRR----TIADVPKCTSNRVKSPAAAVKASSAAQQPIAEHQETLVNQISDLLDKAKDSNEEHGLPTMGRTLIANLKGKMGIAEGXXXXXXXXXXXXXXXXXXXXXXXXXRKLQPVDSGKAKDPKAKYMNKIREKMAMRGASSPSPVSASTNSQPGGDADLLFVARERVGGSQ-----SAWLLREGVGDLLLYLAARSVRLGVIASPETTPVEFDNFVEQLQIQSTDVRSAISPEVFSAEGGDGLRAGLAKAGRDLGV-EGNSPA--VLVVGFSEAILRAATTAEMFTARYHPPNSVREGVVQNFTVRQVDEVRTVVEQLNGISFR 1364 RT SEYAPA PSPNDLKAPLPEKFSVGKN KLKA+LF+YD+LA S T + P P A S++ P+ E LV++I+ +L K + L +GR LIA+LK KMG + R+ +P S + DPKAKYM K+R+K G+ S SP A+ SQPGGDADL F AR V ++ SAW+LR+G GDLL YLAARS+RLGVIA P+T+P EF++FV QL+ QS V +A+SPE DG+ AG+ +A R+LG+ EG VL+VG S +L AAT A MFTARY+PPNS REGV+Q F VR +DEVRTVVEQ+NG+S+R Sbjct: 24 RTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSXXXXXXXXPGAPASPSTSF-DPLTPSGENLVDEITGVLGKGRGDR----LQELGRALIADLKDKMGAS-------------VTSSSAPTPPAKQQREQRPRVSQDS-DPKAKYMEKLRKKTGA-GSISASPA-ATAGSQPGGDADL-FAARNLVSSTEAANLHSAWMLRQGAGDLLTYLAARSLRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLEL---DGVEAGVVRASRELGMGEGRRGGADVLLVGSSNPLLSAATEANMFTARYYPPNSRREGVIQTFVVRDIDEVRTVVEQVNGVSYR 368
BLAST of mRNA_H-paniculata_contig10149.123.1 vs. uniprot
Match: A0A482S443_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S443_9ARCH) HSP 1 Score: 70.9 bits (172), Expect = 9.480e-10 Identity = 61/199 (30.65%), Postives = 86/199 (43.22%), Query Frame = 3 Query: 777 DPKAKYMNKIREKMAMRGASSPSPVSASTNSQPGGDADLLFVARERVGGSQSAWLLREGVGDLLLYLAARSVRLGVIASPETTPVEFDNFVEQLQIQSTDVRSAISPEVFSAEGGDGLRAGLAKAG---RDLGVEGNSPAVLVVGFSEAILRAATTAEMFTARYHPPNSVREGVVQNFTVRQVDEVRTVVEQLNGISFR 1364 DPK +Y +KI+ K+A + SA G A LL GS S WLL EG+G+LL YL RS+RL ++ S T D +QL S S + P+ + E A + + + VL+V E L A FT RY PP + V +F + E+R + +L GI+ R Sbjct: 111 DPKLRYADKIKMKLAKHNMDTARGSSA-------GAASLL--------GSDSRWLLAEGMGELLDYLHNRSIRLAIVGSSHLTQSTTDQLAQQL---SATKLSFVRPDFDAEEKTPATLAAWTERSLLDMEQSLHVRKSEVLLVSGQEDTLVAGKHQGYFTCRYRPPGGLYGQVSTDFIAQDHLEIRDAINELTGIALR 291
BLAST of mRNA_H-paniculata_contig10149.123.1 vs. uniprot
Match: A0A7S2L1U8_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L1U8_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.390e-9 Identity = 90/357 (25.21%), Postives = 149/357 (41.74%), Query Frame = 3 Query: 336 LKAPLPEKFSVGKNNKLKAILFEYDILARS---GRRTIADVPKCTSNRVKSPAAAVKASSAAQQPIAEHQETLVNQISDLLD-------KAKDSNEEHGLPTMGRTLIANLKGKMGIAEGXXXXXXXXXXXXXXXXXXXXXXXXXRKLQPVDSGKAKDPKAKYMNKIREKMAMRGASSPSPVSASTNSQPGGDADLL----FVARERVGGSQSAWLLREGVGDLLLYLAARSVRLGVIASPETTPVEFDNFVEQLQIQSTDVRSAISPEVFSAEGGDGLRAGLAKAGRDLGVEGNSPAVLVVGFSEAILRAATTAEMFTARYHPPNSVREGVVQNFTVRQVDEVRTVVEQLNGISFR 1364 +KA + +GKNNK+++I ++D++AR+ ++ A P +S+ + + ++ +V I++LL+ K KD E L + ++ G M A +PV D + KY KI++K+ G+ + + S+ GDA + A E V S S WL G G+LL YL RS+R+ ++ P T + + ++ L Q +VR + + + L L+KA G+ S LVV + L+AA MFT R N R ++TV + EV+ +V +NGISFR Sbjct: 25 IKADTNSRMDMGKNNKVRSIALDFDLIARNIAHDKKEDATAPPTSSSAGGTMTGRLSQEASTVTRKITPDVGMVQSIANLLNVKLGSDGKKKDDFAEDDLSALESPSVS---GTMHDAR----------------------TSSRSSAKPVKFPPMSDVRDKYAEKIKQKLD-GGSLAGVDRAKLEKSEKKGDAFHIQARTIAAAEPVMKSGSKWLANTGTGNLLAYLTNRSMRIALVPKPNTKDDDVGDDMDSLSRQLPNVRIHSMIKDGERQPDEILNEVLSKAN---GIPEIS--TLVVSDQDDYLKAARDMGMFTCRVQLKNVRRGSCTTDYTVSSIAEVQDIVNDINGISFR 350
BLAST of mRNA_H-paniculata_contig10149.123.1 vs. uniprot
Match: A0A7S3V6T9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6T9_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.420e-7 Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 3 Query: 879 GDADLLFVARE-----RVGGSQSAWLLREGVGDLLLYLAARSVRLGVIASPETTPVEFDNFVEQLQIQSTDVRSAISPEVFSAEGGDGLRAGLAKAGRDLG----------VEGNSPAVLVVGFSEAILRAATTAEMFTARYHPPNSVREGVVQNFTVRQVDEVRTVVEQLNGISF 1361 GDA+ F AR+ V + S W+ G G LL +L ARS+ + +I +P+ E ++ + T S + ++ S +G+ +G + D+G +E + LVV + LR+ MFT R N R + NF V V +V+ V+ +LNGISF Sbjct: 221 GDAEGHFAARKLAAANTVAKAGSKWMASTGSGTLLQFLDARSMIIALIPTPKILNAEEKGMNKKAMNELTKQLSNLKFDILS----EGVDSG---SDSDVGTRILTDVANEIEAGPKSTLVVSDKDEYLRSGRDLGMFTCRVRRKNQPRGNITTNFNVEDVTDVQDVINELNGISF 389 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10149.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10149.123.1 >prot_H-paniculata_contig10149.123.1 ID=prot_H-paniculata_contig10149.123.1|Name=mRNA_H-paniculata_contig10149.123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp MRRCLHTSQLSSRPHQLLQRLHLQPRRTVSEYAPAPPSPNDLKAPLPEKFback to top mRNA from alignment at H-paniculata_contig10149:5912..8744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10149.123.1 ID=mRNA_H-paniculata_contig10149.123.1|Name=mRNA_H-paniculata_contig10149.123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2833bp|location=Sequence derived from alignment at H-paniculata_contig10149:5912..8744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10149:5912..8744+ >mRNA_H-paniculata_contig10149.123.1 ID=mRNA_H-paniculata_contig10149.123.1|Name=mRNA_H-paniculata_contig10149.123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig10149:5912..8744+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |