mRNA_H-paniculata_contig10147.121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10147.121.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI) HSP 1 Score: 256 bits (655), Expect = 5.550e-76 Identity = 132/217 (60.83%), Postives = 165/217 (76.04%), Query Frame = 1 Query: 196 MARRQTFIDPQGFVRISVRIEDVQEAFFRVAVDANLSRSITGGGSGGDFAEWAHCNTAGSFKHDNLLHVIEKISELAKVPLVSCRPWLCMPR-----PGGAIRPVAALLPVHLKMTVGEVLAAHARGANAAGELTLN------PAEEAEFMFIGKAMAHKSDRGSELVPIARNLARLPDNVPLDVFEQLGPDEVRRFSPDTTVGQLGLSHGSVLLFR 813 MA+R FIDPQGFVRISV+I DV+EA+FRVA D +L+RS+TG G GGDFA+W C A SFKHD LL+VI+K+SEL VPLVSCRPWLCMPR P G +RP AALLP HL+M++ E+LAAHA L+++ + E EF+F+GKAMAH++DRG ELVPIA +LA LP+ + L+VFEQ+ P+EVRRF+ D TV + GLSHGS+LLFR Sbjct: 1 MAQRNIFIDPQGFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFNGDKTVAEAGLSHGSILLFR 217
BLAST of mRNA_H-paniculata_contig10147.121.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.960e-16 Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 631 MAHKSDRGSELVPIARNLARLPDNVPLDVFEQLGPDEVRRFSPDTTVGQLGLSHGSVLLFRGVHAQT 831 MAH++DRG ELVPIA +LA LP+ + L+VFEQ+ P+EVRRFS D TV + GLSHGSVLLFR +T Sbjct: 1 MAHRTDRGCELVPIALSLAHLPEGLKLEVFEQITPEEVRRFSGDKTVAEAGLSHGSVLLFRSAQQET 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10147.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10147.121.1 >prot_H-paniculata_contig10147.121.1 ID=prot_H-paniculata_contig10147.121.1|Name=mRNA_H-paniculata_contig10147.121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp VASCQSFRCTSRRPVMTIPHAASPAPITGIPRGEMEPVKTRFLLHKFSAHback to top mRNA from alignment at H-paniculata_contig10147:423..5765- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10147.121.1 ID=mRNA_H-paniculata_contig10147.121.1|Name=mRNA_H-paniculata_contig10147.121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5343bp|location=Sequence derived from alignment at H-paniculata_contig10147:423..5765- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10147:423..5765- >mRNA_H-paniculata_contig10147.121.1 ID=mRNA_H-paniculata_contig10147.121.1|Name=mRNA_H-paniculata_contig10147.121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig10147:423..5765- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |