mRNA_H-paniculata_contig10143.119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10143.119.1
Unique NamemRNA_H-paniculata_contig10143.119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10143.119.1 vs. uniprot
Match: D7G2H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H7_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.930e-45
Identity = 99/128 (77.34%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 MAFKAFFVLVALCLVTLGSAFVAPSSFARNVAVKQAVQMSAQAPLPAAAVPXXXXXXXMSVCAPMATYAAEQSSSLVSQLPTELIADSGTATLAIVVGMFIPCSFLITLYFGTEQKKKGVAEGQAMNK 384
            MAFKAF VLVALCLV+L S FVAP++ ARNVA+KQAVQMSA++ LPAA   XXXXXXX +VC+P+A++AA+ SS+L +QLPTEL+AD+GTATLAIVVGMFIPCSFLITLYFGTEQKKKGV EGQ MNK
Sbjct:    1 MAFKAFAVLVALCLVSLASGFVAPTAVARNVAMKQAVQMSAKSSLPAAXXXXXXXXXXAAVCSPLASFAADPSSAL-AQLPTELLADNGTATLAIVVGMFIPCSFLITLYFGTEQKKKGVIEGQEMNK 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10143.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2H7_ECTSI2.930e-4577.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10143contigH-paniculata_contig10143:2984..6854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005530.1
Exons2
Model size1195
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10143.119.1prot_H-paniculata_contig10143.119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10143 2984..6046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.7375839-CDS-H-paniculata_contig10143:2983..30741622928721.7375839-CDS-H-paniculata_contig10143:2983..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10143 2984..3074 +
1691480594.0953667-CDS-H-paniculata_contig10143:2983..30741691480594.0953667-CDS-H-paniculata_contig10143:2983..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10143 2984..3074 +
1622928721.7592995-CDS-H-paniculata_contig10143:5750..60461622928721.7592995-CDS-H-paniculata_contig10143:5750..6046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10143 5751..6046 +
1691480594.1047318-CDS-H-paniculata_contig10143:5750..60461691480594.1047318-CDS-H-paniculata_contig10143:5750..6046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10143 5751..6046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.7696893-UTR-H-paniculata_contig10143:6046..68541622928721.7696893-UTR-H-paniculata_contig10143:6046..6854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10143 6047..6854 +
1691480594.1137438-UTR-H-paniculata_contig10143:6046..68541691480594.1137438-UTR-H-paniculata_contig10143:6046..6854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10143 6047..6854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10143.119.1

>prot_H-paniculata_contig10143.119.1 ID=prot_H-paniculata_contig10143.119.1|Name=mRNA_H-paniculata_contig10143.119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MAFKAFFVLVALCLVTLGSAFVAPSSFARNVAVKQAVQMSAQAPLPAAAV
PAAAMATAMSVCAPMATYAAEQSSSLVSQLPTELIADSGTATLAIVVGMF
IPCSFLITLYFGTEQKKKGVAEGQAMNK*
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mRNA from alignment at H-paniculata_contig10143:2984..6854+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10143.119.1 ID=mRNA_H-paniculata_contig10143.119.1|Name=mRNA_H-paniculata_contig10143.119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3871bp|location=Sequence derived from alignment at H-paniculata_contig10143:2984..6854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCAAGGCGTTCTTTGTGCTGGTGGCTCTGTGCCTGGTTACCTT
GGGGTCGGCTTTCGTGGCGCCGTCATCTTTCGCGAGAAATGGTAAGTGCC
AATGAACGCCTTTGCGCAAATGATGTGCTCATTCTTTACCTTGAAATATC
TGAGGTTTAACACGGGACTAGCCGATTGGGTTTTCTGGGATGTAGGGCGT
TCATGTGTGGGACAGTTCCTCGGTTACGTCGGTGGAAGGGCGACAGATCG
GGAGCTTGGAGGGGATCTTATGGCAGGATAGGCCTGCTGCTCATGTGCAC
TGATCCTCAGTTGAGGCGTGGCCTCCCTTTTGGGATGGTAAATATGATCG
CACGCATTATCTCGGACGCCCATAAATGTTGTCAAAGTAGGGACCAAGCT
TTTGAGGGGGCAGGACCTACTGACAAGTAAGTTTCTTTGAACACAATTAC
TGCAACTCGTCATCGTAGGTCCAATCGTTCAACGAAGTTCAAGTGTGGCG
AGCGTTCGGTTTGCACTTCATGTCCCTTGCCGGTTGGGGATGACTGGCGT
GTCCCAAGAAGTTGACGCAGAAATAAATAATCTTGAAATGGAATGCGTCC
GTGGAAATCAGTATCTGCCCATCGTCTATTTGACACGCATCTTGATCTTG
TCCAATGTGTCAGATTGATCACCTCTGTTGGGTACAAAGATGCGTCTATC
ACATGATACCACCAACCTATTTCCCGTCTAATTGTGAAAAAGTAGCCTAC
TGTTGCCCGGGATACTTCGGGCCTTCACTCCCCTTTTGTAATATCCGTGC
CGTTATGGATGGCCTTCAAGTTATCTTGTTTCGTTGTATTTTTCACTATC
AACGGTCGTCCTGTAGGTGCCAGCCGTGGGGAAGGCTGAACATGAGCGTC
AGTGTGCTCTGTACCGTCGTCTCTCGTAGCTTCTCGAAGAGCACAGGGTA
TCTGATGAGGACGTACCTAATCGCTTTGTTCAGCAGTTGTTTCTTACTTT
TCAATGCCACACTCGGTTTCTTTCCTCATGTACTGCATTTCGATTGGGCA
ATGTCTAATCGCTGCTGACGGAAGATATTTGTTGTCGATTCTCGAGATGA
ACTACCTTGTTGCTCAAGTCCGAAGTTGAACGGGAATACACCTTTGTATG
CACAAATATTTTATTCAGAAAAAAAGGTATACGTCATAGGGCTGCTTGAA
GGACATTCCATCGTTTGAACGCCGGCGAAGACGGCATGCATGCTGAGTGT
TAATTGTAAAACGAGGATGAGACCATCCGGCTGGTCCAACTAAACAGTGA
GGTTGTTCAATTGCCAACGTGCAGGATGTCCAAGCCGCGACTTGACTCCT
CCCTTACCCAGTGTAGTTTGGGGTAAAATAATCTTACTTATCCAGCGATT
GTTGACATTGAGGTCGGGCATGTCATACCTTCGAGCTACCGAAATGAGTT
GTGATCCACAGTACCTGTGTGGGACTTGACCTGTGAGATTCTGACGTCGA
ACCTACATTCACACGTTGATATAATAGTGCTCTCTAATGTCGGATTGAGG
CTTGGACGTCACCATGGTGAAGGGTTGGCGGAAGCACATGCGTGAAGACG
GACGTCCCCGCTGAACGGTACTTGAAGGGAATGAAGGCCTGTAATGAAAA
CGCTGGAAATGTCCGGGTACTTGAAACACATCGTCCGCCTCCCTACCGTG
TGTCCTCTTCAGTCCGCCTTGGCTGGTAGGTCCCTGTAGTGGTATGACAC
CCTTGAATGATGCGTTGTGTGCTACATGTATTATCTTACAGTGTTTTTAG
TAAGCATCTAATCTTGCAGTGACAATTGAACATCCGAAGAATCAGACGGT
TCAAGGAGTCATGTCCGTGCTTCTTGGAAAACGCCTTGAAATTATTCTCA
CCCTAGTGTCGAGCCTTGTGAGTGGTGATGTAGACATGAATGTCCATGAA
ATGTCTCCTCAGTAGGGAAGATGATGTTTCACAGTAAATTTACATGAACA
GGATCAAGTCTTCAGGTGGAGTATTCGATTTCAGGAAATTCGGCTGAGCA
TTTGATATCGTAAACACGGTAATAGCTACTACACTTTGGTACTCACCAAT
TGGCATGAACGGTTGGTGCAGGAGCCTCTCTTCCATTGGGCGTTCGCTGA
TTGACTTGTGAGGAATTCATGCCTTTGCTTGGTCCGGAATCTGTCGTAAT
GGGGCGGATCAGATCGATGGGAAAACAGTCTCCATTTATAGACTTGTGAA
TCTCAGTGGAAATTGCTAAATGGAGGTGCTACTTGCCTCGGCCGGAGATT
TGTGAAATCCGCGGAGCATATGGCTAAATGATGTAAATTGTTTCGCGTGT
CGTGGAAAACTTGGCCTGGAGTTGCGAAAGGTGATTTCCACAAATTGGGC
TTGTTTCATTTCGATTGACTCCTTTTTTCATTGAAATGATACAAAGCTCA
CATCCTACCTATAGAATTTGGATTTCCAAATACTTGCGGTGACATCGTCA
AATTGCGCAAGTTTCCACTTGGCATTTTAGTGTTACATCGAGCGAGGGGA
AATGAGGAATCACGCGGCATGAAGTAGTTTGGCGAATCAAAATGGCTCAT
TTGTGACATTTGTTCTTGTGACGCCGTGACACCCGATACGACATGGTTCA
AACATCAGCCCTCCGCGTCATCACCCGAAGATGGCGCTTGGCTGACTGCT
TCTCATACTCCCTTTCGCCCATCTCCCACTCTCATTTTCTCCTTGCCGTG
CCTTCGACTCCGAACAGTGGCCGTGAAGCAGGCGGTTCAGATGAGCGCAC
AGGCACCGTTGCCAGCGGCAGCAGTACCTGCGGCGGCGATGGCAACAGCG
ATGTCCGTATGCGCACCAATGGCGACGTACGCCGCGGAGCAGTCTAGCAG
CCTTGTGTCGCAGCTTCCCACAGAGCTTATCGCGGACAGTGGTACTGCCA
CTTTGGCCATCGTTGTGGGCATGTTCATTCCTTGCTCATTCCTCATCACT
CTCTACTTCGGTACTGAGCAAAAGAAGAAGGGTGTCGCGGAGGGACAGGC
AATGAACAAGTAGACGAGTTGAGACGACATGAAGACTTTTCGTTTCACTT
TCGGTTTTCGCCGTATTCGCCTTGTTGTGCACCTGCGCGAGGCATGTGGT
AGTGTTGCGTTGTTTTTATTGGGACTTGAGTCGTGTAGGTGGAGTCTATT
CGGGGCTAACAATATGGGCCTTGTGTGAAACAATATGACTCCGCATGCTG
AAAGGTTGGAAATACGAGTTGATCCGTTTGTGCTTTGTCCAAGTATTAGA
AACGTGAGCAAGGCGTAGATGTATGTATTACTTCAAATGGCGCCGTTACT
AGACCAGCAAATCAGTGCTCGAGGCAGGGGACGCGGGAAGTCAATCGTTC
CCCCTAAACGCAGTTTTTCCCCTTGTAGCCCTTAGGAAGGCAGATGCATT
GAGTGGAAGATTTTTGCAATAAGTCGAACGCATTAGAGGATTTGCTGTGC
TCGTCGCCAAGTTTTTACGTACTGGCAATCTAACGGCTTCCCGTACTGTG
TTTTTTCTCTGCAGAAGAAATGTACGATACACGTCGGGAACCGTCAAAAT
ACAGTTTTTGTTCATTTACACGCTGATGCGAAACACTCTATGTTTAATAT
CCTCGCTCTGGTGATTTACCATCTCCGATTGCCTTATCACATCGAAATGG
GCTGCAAGATGAACGGGAAATTGTGTCATGGGTTGAAACAAAATTATCGA
GGTTGGATTCCTCATAAGATTCTTGTAATTTACCGAGTTGATCACGTGAA
ACGATTCGATAGTGATGATAGGGAAGCATGTTCGTGGGTGTGCCAGAGCC
GTGATTTTATTTTTTTCTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig10143:2984..6854+

>mRNA_H-paniculata_contig10143.119.1 ID=mRNA_H-paniculata_contig10143.119.1|Name=mRNA_H-paniculata_contig10143.119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig10143:2984..6854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCAAGGCGTTCTTTGTGCTGGTGGCTCTGTGCCTGGTTACCTT
GGGGTCGGCTTTCGTGGCGCCGTCATCTTTCGCGAGAAATGATGGCTTTC
AAGGCGTTCTTTGTGCTGGTGGCTCTGTGCCTGGTTACCTTGGGGTCGGC
TTTCGTGGCGCCGTCATCTTTCGCGAGAAATGTGGCCGTGAAGCAGGCGG
TTCAGATGAGCGCACAGGCACCGTTGCCAGCGGCAGCAGTACCTGCGGCG
GCGATGGCAACAGCGATGTCCGTATGCGCACCAATGGCGACGTACGCCGC
GGAGCAGTCTAGCAGCCTTGTGTCGCAGCTTCCCACAGAGCTTATCGCGG
ACAGTGGTACTGCCACTTTGGCCATCGTTGTGGGCATGTTCATTCCTTGC
TCATTCCTCATCACTCTCTACTTCGGTACTGAGCAAAAGAAGAAGGGTGT
CGCGGAGGGACAGGCAATGAACAAGTAGTGGCCGTGAAGCAGGCGGTTCA
GATGAGCGCACAGGCACCGTTGCCAGCGGCAGCAGTACCTGCGGCGGCGA
TGGCAACAGCGATGTCCGTATGCGCACCAATGGCGACGTACGCCGCGGAG
CAGTCTAGCAGCCTTGTGTCGCAGCTTCCCACAGAGCTTATCGCGGACAG
TGGTACTGCCACTTTGGCCATCGTTGTGGGCATGTTCATTCCTTGCTCAT
TCCTCATCACTCTCTACTTCGGTACTGAGCAAAAGAAGAAGGGTGTCGCG
GAGGGACAGGCAATGAACAAGTAG
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