mRNA_H-paniculata_contig10135.113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10135.113.1
Unique NamemRNA_H-paniculata_contig10135.113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: D7FQJ3_ECTSI (Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 3.380e-31
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            VNM+MSTM+ S+AEGM L D LGL +DSLIEILGQGAMA+PM ALK PLM KK+++ NFPLKHAQKDMRFALGLGD+ +
Sbjct:  226 VNMIMSTMLVSVAEGMCLGDSLGLSSDSLIEILGQGAMASPMVALKGPLMAKKDYSSNFPLKHAQKDMRFALGLGDKAA 304          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A835YH89_9STRA (2-hydroxy-3-oxopropionate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH89_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.590e-29
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    4 NMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            NM+M TM+ SLAEGMSLS+ LGL ++ LIEILG GAMANPMF LK PLM   ++APNFPLKHAQKDMRFALGLG+  +
Sbjct:  184 NMIMGTMLASLAEGMSLSESLGLKSEDLIEILGLGAMANPMFKLKGPLMESGSYAPNFPLKHAQKDMRFALGLGEATA 261          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A835YEH8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YEH8_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 2.400e-25
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            VNMVM +MMTS AEG++L+D++GL    LI+++G GA+A PMFALK P M K+ +AP FPLKH QKDMR AL LGDQV+
Sbjct:  163 VNMVMGSMMTSFAEGLALADKVGLRQSDLIDVIGLGAIAAPMFALKGPAMAKRAYAPAFPLKHQQKDMRLALALGDQVA 241          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: D8U8A6_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8A6_VOLCA)

HSP 1 Score: 100 bits (248), Expect = 8.690e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            VNMVM +MM +  EGM+L+D+ GL+  +L+EILG GAMANPMFALK P +  +N+ P FPLKH QKD+R AL LGD ++
Sbjct:  181 VNMVMGSMMGAFCEGMALADKAGLEQSALLEILGLGAMANPMFALKGPAIMSRNYPPAFPLKHQQKDLRLALALGDALN 259          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A7R9VUI8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUI8_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 1.270e-23
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            VNMVM +MM + AEG+SL++R GL+   L+E++G GA+A PM+ALK P M    +AP FPLKH QKDMR AL LGDQV+
Sbjct:   64 VNMVMGSMMVAFAEGLSLAERSGLNQKDLVEVVGLGAIAAPMYALKGPTMIDGKYAPAFPLKHQQKDMRLALALGDQVA 142          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: UPI0010AD2A3D (NAD(P)-dependent oxidoreductase n=1 Tax=Desulfosediminicola flagellatus TaxID=2569541 RepID=UPI0010AD2A3D)

HSP 1 Score: 99.4 bits (246), Expect = 1.440e-23
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            +NMVM TMMT+ AEG++L D++GL  + +I++L QGA+ NPMF LK PLM    FAP FPLKH QKDMR AL LGD+ S
Sbjct:  174 INMVMGTMMTAFAEGLALGDKIGLKMEDVIDVLAQGAINNPMFQLKGPLMADGKFAPAFPLKHMQKDMRLALQLGDKHS 252          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A835WD89_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WD89_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 1.580e-23
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQV 234
            VNMVM +MMTS AEG++L+D++GL    +IE++G GA+A PMFALK P M  +++AP FPLKH QKDMR AL LGD+V
Sbjct:  261 VNMVMGSMMTSFAEGLALADKVGLRQQDVIEVVGLGAIAAPMFALKGPAMAARSYAPAFPLKHQQKDMRLALALGDEV 338          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A150GKR8_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GKR8_GONPE)

HSP 1 Score: 99.4 bits (246), Expect = 1.740e-23
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQV 234
            VNMVM  MM +  EGM+L+D+ GL+  +L+EILG GAMANPMFALK P +  +N+ P FPLKH QKD+R AL LGD +
Sbjct:  181 VNMVMGAMMGAFCEGMALADKAGLEQSALLEILGLGAMANPMFALKGPAIMARNYPPAFPLKHQQKDLRLALALGDSL 258          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A2J8AB59_9CHLO (Putative oxidoreductase GLYR1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AB59_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 5.230e-23
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQVS 237
            VNMVM  MM S AEG++L+D++GL    +I+++G GA+A PMFALK P M K+ +AP FPLKH QKDMR AL LGD+V+
Sbjct:  256 VNMVMGAMMASFAEGLALADKVGLRQQDVIDVIGLGAIAAPMFALKGPAMAKRAYAPAFPLKHQQKDMRLALALGDEVA 334          
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Match: A0A7S2V669_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V669_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.260e-23
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 VNMVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHKKNFAPNFPLKHAQKDMRFALGLGDQV 234
            VNM+M TM+ SLAEGM+L  + GL  + L++IL  GAMANPMF LK P M K  +  NFPLKHAQKDMRFAL LGD++
Sbjct:  210 VNMIMGTMLASLAEGMNLVKKAGLKEEDLLDILDLGAMANPMFKLKGPTMIKGAYPANFPLKHAQKDMRFALKLGDEL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10135.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQJ3_ECTSI3.380e-3174.68Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectoca... [more]
A0A835YH89_9STRA1.590e-2971.792-hydroxy-3-oxopropionate reductase n=1 Tax=Tribon... [more]
A0A835YEH8_9CHLO2.400e-2563.29Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
D8U8A6_VOLCA8.690e-2459.49Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A7R9VUI8_9CHLO1.270e-2359.49Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
UPI0010AD2A3D1.440e-2360.76NAD(P)-dependent oxidoreductase n=1 Tax=Desulfosed... [more]
A0A835WD89_9CHLO1.580e-2361.54Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A150GKR8_GONPE1.740e-2360.26Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A2J8AB59_9CHLO5.230e-2359.49Putative oxidoreductase GLYR1 n=1 Tax=Tetrabaena s... [more]
A0A7S2V669_9STRA5.260e-2362.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10135contigH-paniculata_contig10135:4479..5307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue8.2e-24
Seed eggNOG ortholog2880.D7FQJ3
KEGG rclassRC00042,RC00087
KEGG koko:K18121
KEGG ReactionR00465,R09281
KEGG Pathwayko00630,ko00650,ko01100,ko01120,ko01200,map00630,map00650,map01100,map01120,map01200
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
EC1.1.1.79
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size237
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10135.113.1prot_H-paniculata_contig10135.113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10135 4485..5307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.1700306-UTR-H-paniculata_contig10135:4478..44841622928721.1700306-UTR-H-paniculata_contig10135:4478..4484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10135 4479..4484 +
1691480593.843162-UTR-H-paniculata_contig10135:4478..44841691480593.843162-UTR-H-paniculata_contig10135:4478..4484Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10135 4479..4484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.1905189-CDS-H-paniculata_contig10135:4484..45711622928721.1905189-CDS-H-paniculata_contig10135:4484..4571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10135 4485..4571 +
1691480593.8557694-CDS-H-paniculata_contig10135:4484..45711691480593.8557694-CDS-H-paniculata_contig10135:4484..4571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10135 4485..4571 +
1622928721.2043564-CDS-H-paniculata_contig10135:5163..53071622928721.2043564-CDS-H-paniculata_contig10135:5163..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10135 5164..5307 +
1691480593.8653183-CDS-H-paniculata_contig10135:5163..53071691480593.8653183-CDS-H-paniculata_contig10135:5163..5307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10135 5164..5307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10135.113.1

>prot_H-paniculata_contig10135.113.1 ID=prot_H-paniculata_contig10135.113.1|Name=mRNA_H-paniculata_contig10135.113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MVMSTMMTSLAEGMSLSDRLGLDNDSLIEILGQGAMANPMFALKAPLMHK
KNFAPNFPLKHAQKDMRFALGLGDQVS
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mRNA from alignment at H-paniculata_contig10135:4479..5307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10135.113.1 ID=mRNA_H-paniculata_contig10135.113.1|Name=mRNA_H-paniculata_contig10135.113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=829bp|location=Sequence derived from alignment at H-paniculata_contig10135:4479..5307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAACATGGTGATGTCCACCATGATGACCTCCTTGGCTGAGGGGATGAG TCTTTCCGACAGGCTGGGATTGGACAATGACTCACTGATCGAGGTACATT CGTGTAGCGTAGGGGACAATAACGTCAGGTGGTTGGGTGTAGCAGTAATT GTGACGGACACAACAGCTGTTGAGGCGGCGATATACTCAAACTACGTCGT GTACTGGATGTGTGGGGCATTTTTTTGAAGACTGTGTAAATACAACGCCT GTTCACCCTCATTGACTCCCAGAGTGGTTTTGACCAGAGCCACGTGACCT GAGTTGACAGTGGTTTGTTGGAGCTAATGGTACACTGTTGTGGCGTGAAA ATCTTTCACGCTGCTTGTGAAAGTTTATAACCGTTCAGTAGCAAGTTATT TCGGTTGAAGATGAGCTAGCGTTTTTGTCCTCCCCCCCCCCCCCCCCCCT CAAATATTTATGTCACAAAAGACGTTTCGTCTCGAGAATAAGGAGAACGA AAAACCAAGGTGTCGTCGGGAACGGGGAAGAGAGAAAATTGAATTCTCTT CTCAGCAAAGACGTCGAATTGTCTCCTAGTTTCTTCATGTCTTGTGACCG CTCTGCTACAGAGTGATGTCCCCCCTCTCCTCCTTCCCCTCCCCCCCTCT TCTCCGCCCTCCCTATTGGACTCACTGTTATTCAGATCCTTGGTCAGGGC GCGATGGCGAATCCGATGTTTGCCCTCAAGGCCCCCCTCATGCATAAGAA GAACTTCGCCCCCAACTTCCCCCTCAAGCATGCCCAGAAGGACATGCGCT TTGCTCTCGGGCTTGGTGACCAGGTGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig10135:4479..5307+

>mRNA_H-paniculata_contig10135.113.1 ID=mRNA_H-paniculata_contig10135.113.1|Name=mRNA_H-paniculata_contig10135.113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig10135:4479..5307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATGTCCACCATGATGACCTCCTTGGCTGAGGGGATGAGTCTTTC
CGACAGGCTGGGATTGGACAATGACTCACTGATCGAGATGGTGATGTCCA
CCATGATGACCTCCTTGGCTGAGGGGATGAGTCTTTCCGACAGGCTGGGA
TTGGACAATGACTCACTGATCGAGATCCTTGGTCAGGGCGCGATGGCGAA
TCCGATGTTTGCCCTCAAGGCCCCCCTCATGCATAAGAAGAACTTCGCCC
CCAACTTCCCCCTCAAGCATGCCCAGAAGGACATGCGCTTTGCTCTCGGG
CTTGGTGACCAGGTGAGCATCCTTGGTCAGGGCGCGATGGCGAATCCGAT
GTTTGCCCTCAAGGCCCCCCTCATGCATAAGAAGAACTTCGCCCCCAACT
TCCCCCTCAAGCATGCCCAGAAGGACATGCGCTTTGCTCTCGGGCTTGGT
GACCAGGTGAGC
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