mRNA_H-paniculata_contig10130.111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TZN7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TZN7_CAJCA) HSP 1 Score: 94.0 bits (232), Expect = 6.050e-21 Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C AC GK S+ + E + E+LGL+HTD+ GPI SF G+ + I F+DD++R VY L+ KS+ A K+F+ + K QI+ LR D+GG FT F +C E GI Sbjct: 157 FCEACVLGKHSRASFPRSSEYKAKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYLLQEKSKTFKAFKKFKVMVEKETNKQIKALRLDRGGEFTSAEFMEYCEEQGI 271
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TD17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TD17_CAJCA) HSP 1 Score: 95.5 bits (236), Expect = 1.460e-20 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C AC GK ++ E + E+LGL+HTD+ GPI SF G+ + I F+DD++R VY L+ KS+A A K+F+ + K QI+ LRSD+GG FT F +C E GI Sbjct: 459 FCEACVLGKHTRTSFPNSSEYKVKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGI 573
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151RD25_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RD25_CAJCA) HSP 1 Score: 91.3 bits (225), Expect = 2.620e-20 Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 1 ICSACERGKTSKR--PVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C AC GK ++ P ++Y+ + E+LGL+HTD+ GPI SF G+ + I F+DD++R VY L+ KS+A A K+F+ + K QI+ LRSD+GG FT F +C + GI Sbjct: 53 FCEACVLGKHTRTSFPSSEYKVK---EQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTCVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEDQGI 166
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TQU9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TQU9_CAJCA) HSP 1 Score: 94.7 bits (234), Expect = 2.700e-20 Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1 Query: 1 ICSACERGKTSKRPV---NKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C AC GK S+ +KY+E+ E+LGL+HTD+ GPI SF G+ + I F+DD++R VY L+ KS+A A K+F+ + K QI+ LRSD+GG FT F +C E GI Sbjct: 166 FCEACVLGKHSRTSFPSSSKYKEK---EQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGI 280
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151RAK8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAK8_CAJCA) HSP 1 Score: 92.0 bits (227), Expect = 2.450e-19 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C C GK + K +T E+LGL+HTD+ GPI SF G+ + I F+DD +R VY L+ KSEA K+F + K G QI+ +RSD+GG F SF +C ++GI Sbjct: 466 FCEECVLGKHHRVGFPKSALYRTEEKLGLIHTDLCGPISPSSFSGKKYFISFIDDLSRKTWVYLLQEKSEAFEVFKRFRLMVEKETGRQIKGIRSDRGGEFISSSFMEYCEDHGI 580
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 90.5 bits (223), Expect = 8.470e-19 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 +C C+ GK K P K + TE+L LVHTD+ GP+ S G + + F+DDY RM V+ L+ KS+ +F+ + GLQ++RLRSD G +T F+ FC + GI Sbjct: 429 LCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGI 543
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA) HSP 1 Score: 90.1 bits (222), Expect = 1.160e-18 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 4 CSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C AC +GK S+ P K + TE+LGL+H+D+ GP+ SF G + + F+DDY RM Y +R+KSE L K F++ + L+I+ LR+D G + + F+ F E+GI Sbjct: 462 CVACLKGKQSRLPFPKQSYTRATEKLGLIHSDLCGPMSVNSFSGAKYLLTFIDDYTRMTFGYFIRNKSEVLPVFKIFKKFVENQTNLKIKMLRTDNGREYVNKDFQLFLQEHGI 575
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151SME6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SME6_CAJCA) HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18 Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C C GK ++ + E + E+LGL+HTD+ GPI ESF G+ + + F+DD++R VY L+ K E K+F+ + K I+ +RSD+ G FT F +C E+GI Sbjct: 36 FCEECVIGKQARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVGKETSKVIKAVRSDRRGEFTSVEFNKYCEEHGI 150
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: UPI0019D143F0 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0019D143F0) HSP 1 Score: 87.4 bits (215), Expect = 5.300e-18 Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGESFEGR-SFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 +C +C GK K+P K + E+ TE LGL+HTD+ GP+ G + I F DD +R VY ++HKSEA K+F + + K G I+ LRSD+GG + F+ ENGI Sbjct: 258 VCPSCLLGKMPKKPF-KGKGERATEVLGLIHTDVCGPMSTHARGGYEYFITFTDDKSRYGYVYLMKHKSEAFERFKEFRQEVEKQTGKSIKILRSDRGGEYLSAEFQDHLKENGI 371
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151QZW7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QZW7_CAJCA) HSP 1 Score: 87.8 bits (216), Expect = 6.730e-18 Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342 C C GK ++ + E + E+LGL+HTD+ GPI ESF G+ + + F+DD++R VY L+ K E K+F+ + K I+ +RSD+GG FT F +C E+GI Sbjct: 36 FCEECVIGKHARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVEKETSKFIKAIRSDRGGEFTSFEFNKYCEEHGI 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10130.111.1 >prot_H-paniculata_contig10130.111.1 ID=prot_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGESFEGRSFAIFback to top mRNA from alignment at H-paniculata_contig10130:8264..8608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10130.111.1 ID=mRNA_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig10130:8264..8608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10130:8264..8608+ >mRNA_H-paniculata_contig10130.111.1 ID=mRNA_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig10130:8264..8608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |