mRNA_H-paniculata_contig10130.111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10130.111.1
Unique NamemRNA_H-paniculata_contig10130.111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TZN7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TZN7_CAJCA)

HSP 1 Score: 94.0 bits (232), Expect = 6.050e-21
Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C AC  GK S+    +  E +  E+LGL+HTD+ GPI   SF G+ + I F+DD++R   VY L+ KS+   A K+F+  + K    QI+ LR D+GG FT   F  +C E GI
Sbjct:  157 FCEACVLGKHSRASFPRSSEYKAKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYLLQEKSKTFKAFKKFKVMVEKETNKQIKALRLDRGGEFTSAEFMEYCEEQGI 271          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TD17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TD17_CAJCA)

HSP 1 Score: 95.5 bits (236), Expect = 1.460e-20
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C AC  GK ++       E +  E+LGL+HTD+ GPI   SF G+ + I F+DD++R   VY L+ KS+A  A K+F+  + K    QI+ LRSD+GG FT   F  +C E GI
Sbjct:  459 FCEACVLGKHTRTSFPNSSEYKVKEQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGI 573          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151RD25_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RD25_CAJCA)

HSP 1 Score: 91.3 bits (225), Expect = 2.620e-20
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 ICSACERGKTSKR--PVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C AC  GK ++   P ++Y+ +   E+LGL+HTD+ GPI   SF G+ + I F+DD++R   VY L+ KS+A  A K+F+  + K    QI+ LRSD+GG FT   F  +C + GI
Sbjct:   53 FCEACVLGKHTRTSFPSSEYKVK---EQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTCVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEDQGI 166          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151TQU9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TQU9_CAJCA)

HSP 1 Score: 94.7 bits (234), Expect = 2.700e-20
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 ICSACERGKTSKRPV---NKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C AC  GK S+      +KY+E+   E+LGL+HTD+ GPI   SF G+ + I F+DD++R   VY L+ KS+A  A K+F+  + K    QI+ LRSD+GG FT   F  +C E GI
Sbjct:  166 FCEACVLGKHSRTSFPSSSKYKEK---EQLGLIHTDLCGPISPASFSGKKYFISFIDDFSRKTWVYFLQEKSKAFEAFKKFKVMVEKETNKQIKALRSDRGGEFTSAEFMEYCEEQGI 280          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151RAK8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAK8_CAJCA)

HSP 1 Score: 92.0 bits (227), Expect = 2.450e-19
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C  C  GK  +    K    +T E+LGL+HTD+ GPI   SF G+ + I F+DD +R   VY L+ KSEA    K+F   + K  G QI+ +RSD+GG F   SF  +C ++GI
Sbjct:  466 FCEECVLGKHHRVGFPKSALYRTEEKLGLIHTDLCGPISPSSFSGKKYFISFIDDLSRKTWVYLLQEKSEAFEVFKRFRLMVEKETGRQIKGIRSDRGGEFISSSFMEYCEDHGI 580          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 90.5 bits (223), Expect = 8.470e-19
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGE-SFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
            +C  C+ GK  K P  K    + TE+L LVHTD+ GP+   S  G  + + F+DDY RM  V+ L+ KS+      +F+  +    GLQ++RLRSD G  +T   F+ FC + GI
Sbjct:  429 LCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGI 543          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A0N1ICY1_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N1ICY1_PAPMA)

HSP 1 Score: 90.1 bits (222), Expect = 1.160e-18
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    4 CSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
            C AC +GK S+ P  K    + TE+LGL+H+D+ GP+   SF G  + + F+DDY RM   Y +R+KSE L   K F++ +     L+I+ LR+D G  +  + F+ F  E+GI
Sbjct:  462 CVACLKGKQSRLPFPKQSYTRATEKLGLIHSDLCGPMSVNSFSGAKYLLTFIDDYTRMTFGYFIRNKSEVLPVFKIFKKFVENQTNLKIKMLRTDNGREYVNKDFQLFLQEHGI 575          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151SME6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SME6_CAJCA)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C  C  GK ++    +  E +  E+LGL+HTD+ GPI  ESF G+ + + F+DD++R   VY L+ K E     K+F+  + K     I+ +RSD+ G FT   F  +C E+GI
Sbjct:   36 FCEECVIGKQARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVGKETSKVIKAVRSDRRGEFTSVEFNKYCEEHGI 150          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: UPI0019D143F0 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0019D143F0)

HSP 1 Score: 87.4 bits (215), Expect = 5.300e-18
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGESFEGR-SFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
            +C +C  GK  K+P  K + E+ TE LGL+HTD+ GP+     G   + I F DD +R   VY ++HKSEA    K+F + + K  G  I+ LRSD+GG +    F+    ENGI
Sbjct:  258 VCPSCLLGKMPKKPF-KGKGERATEVLGLIHTDVCGPMSTHARGGYEYFITFTDDKSRYGYVYLMKHKSEAFERFKEFRQEVEKQTGKSIKILRSDRGGEYLSAEFQDHLKENGI 371          
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Match: A0A151QZW7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QZW7_CAJCA)

HSP 1 Score: 87.8 bits (216), Expect = 6.730e-18
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIG-ESFEGRSFAIFFVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAFTGESFRPFCAENGI 342
             C  C  GK ++    +  E +  E+LGL+HTD+ GPI  ESF G+ + + F+DD++R   VY L+ K E     K+F+  + K     I+ +RSD+GG FT   F  +C E+GI
Sbjct:   36 FCEECVIGKHARTSFPRSSEYRAKEQLGLIHTDLCGPITPESFSGKKYFVSFIDDFSRKTWVYFLKEKLEVFETFKKFKVMVEKETSKFIKAIRSDRGGEFTSFEFNKYCEEHGI 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10130.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151TZN7_CAJCA6.050e-2141.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TD17_CAJCA1.460e-2042.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RD25_CAJCA2.620e-2041.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TQU9_CAJCA2.700e-2044.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RAK8_CAJCA2.450e-1941.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T355_CAJCA8.470e-1939.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A0N1ICY1_PAPMA1.160e-1839.47Retrovirus-related Pol polyprotein from transposon... [more]
A0A151SME6_CAJCA2.460e-1837.39Retrovirus-related Pol polyprotein from transposon... [more]
UPI0019D143F05.300e-1840.87DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A151QZW7_CAJCA6.730e-1838.26Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10130contigH-paniculata_contig10130:8264..8608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue7.2e-16
Seed eggNOG ortholog3641.EOY17849
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928721.0136888-CDS-H-paniculata_contig10130:8263..86081622928721.0136888-CDS-H-paniculata_contig10130:8263..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10130 8264..8608 +
1691480593.7687438-CDS-H-paniculata_contig10130:8263..86081691480593.7687438-CDS-H-paniculata_contig10130:8263..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10130 8264..8608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10130.111.1prot_H-paniculata_contig10130.111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10130 8264..8608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10130.111.1

>prot_H-paniculata_contig10130.111.1 ID=prot_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
ICSACERGKTSKRPVNKYREEQTTERLGLVHTDIAGPIGESFEGRSFAIF
FVDDYNRMRKVYALRHKSEALWALKQFERGIAKANGLQIQRLRSDQGGAF
TGESFRPFCAENGI*
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mRNA from alignment at H-paniculata_contig10130:8264..8608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10130.111.1 ID=mRNA_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig10130:8264..8608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGCTCAGCATGTGAGCGAGGGAAGACATCGAAGCGACCAGTAAACAA GTATCGGGAAGAGCAGACAACGGAGCGACTGGGACTAGTGCATACGGATA TCGCAGGACCGATAGGTGAATCTTTCGAGGGACGCAGTTTCGCCATTTTC TTCGTGGACGACTACAATCGAATGCGTAAGGTCTACGCCCTGAGACACAA ATCAGAGGCGTTATGGGCTCTGAAACAGTTCGAGCGGGGCATCGCGAAGG CAAACGGGCTACAAATACAACGTCTTCGGTCAGATCAAGGAGGAGCGTTT ACAGGAGAATCGTTCCGACCGTTTTGTGCGGAAAATGGCATATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10130:8264..8608+

>mRNA_H-paniculata_contig10130.111.1 ID=mRNA_H-paniculata_contig10130.111.1|Name=mRNA_H-paniculata_contig10130.111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig10130:8264..8608+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGCTCAGCATGTGAGCGAGGGAAGACATCGAAGCGACCAGTAAACAA
GTATCGGGAAGAGCAGACAACGGAGCGACTGGGACTAGTGCATACGGATA
TCGCAGGACCGATAGGTGAATCTTTCGAGGGACGCAGTTTCGCCATTTTC
TTCGTGGACGACTACAATCGAATGCGTAAGGTCTACGCCCTGAGACACAA
ATCAGAGGCGTTATGGGCTCTGAAACAGTTCGAGCGGGGCATCGCGAAGG
CAAACGGGCTACAAATACAACGTCTTCGGTCAGATCAAGGAGGAGCGTTT
ACAGGAGAATCGTTCCGACCGTTTTGTGCGGAAAATGGCATATAGATCTG
CTCAGCATGTGAGCGAGGGAAGACATCGAAGCGACCAGTAAACAAGTATC
GGGAAGAGCAGACAACGGAGCGACTGGGACTAGTGCATACGGATATCGCA
GGACCGATAGGTGAATCTTTCGAGGGACGCAGTTTCGCCATTTTCTTCGT
GGACGACTACAATCGAATGCGTAAGGTCTACGCCCTGAGACACAAATCAG
AGGCGTTATGGGCTCTGAAACAGTTCGAGCGGGGCATCGCGAAGGCAAAC
GGGCTACAAATACAACGTCTTCGGTCAGATCAAGGAGGAGCGTTTACAGG
AGAATCGTTCCGACCGTTTTGTGCGGAAAATGGCATATAG
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