mRNA_H-paniculata_contig1013.110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI) HSP 1 Score: 364 bits (935), Expect = 1.680e-124 Identity = 190/260 (73.08%), Postives = 208/260 (80.00%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSG--TCFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSN-DTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKE 771 ME+L NT MEPGQNPDDYFN KHLLRHKV+KMGE ISDRYFKD+CVTGFT EYK+VKMIM+RDP+FNV+ MQTTM HM LDEQSRKGSKGGIAGRGF M T S TCFGCGE GHIRRNC ++RGKGR ++TKPAGA KWC HFTTK+SDEECY QGAKRP T KAFSAC H SS S +K TAKE+SS K+AID S DGDESDEGFMYATT G EV+ N G TLLV+ GATETM DDRLIP LK+ Sbjct: 1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKD 260
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 358 bits (918), Expect = 4.800e-115 Identity = 197/317 (62.15%), Postives = 225/317 (70.98%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSG--TCFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPA-TAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGAT------------------------------------------LLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAIT 816 MEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D CVTGFT+EYKDVKMIMYRDPDFNVD+MQTTMRHMFLDEQSR G KG IAGRGFAM TS TCF CGE GHI RNC KRGKG+ ++TKPAGAAKWCSVHFTT+HSDEEC+EQGA RP+KS++TGKA SAC S S K A T +E+SS ++ IDFSA+G ES+EGFMYA H G+++K GAT LL+DTGA+E MLDD LIPGLKEIM+E+K+L KPK ++ Sbjct: 116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEG-ESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVS 430
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 283 bits (725), Expect = 1.510e-87 Identity = 153/274 (55.84%), Postives = 195/274 (71.17%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTH--NGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAI 813 MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV M +TMR++FLDEQSRKG KG IAGRGFAMAT S C C E GHIRRNCP+ + + + ++TKPAGA KWCS H TT HSDEECY+QG KRPE + D+ K F+AC++ SSAS K +S+++ + +DF+ D D D GFM+AT +G+ ++ G L+VD+ A+ETM D+RLIP + +Y Q PK + Sbjct: 156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKD------DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPDGN--LHDYTQRNSPKIV 420
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 283 bits (725), Expect = 3.530e-87 Identity = 154/265 (58.11%), Postives = 192/265 (72.45%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPAT---AKESSSKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTH S+ S + K T + ++K+ IDFS D D GFMY T +G+ G + LVD+GA+ETM DDRLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE) HSP 1 Score: 279 bits (713), Expect = 1.960e-86 Identity = 154/265 (58.11%), Postives = 192/265 (72.45%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSK------KSAIDFSADGDESDEGFMY---ATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTHXXXX + S K + K K+ +DFS D D GFMY + +G+ G + LVD+GA+ETM D+RLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXXTQSRDTHAKPTKRETPKETEKTEKAEVDFSYDEDTFKGGFMYHAICSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.340e-84 Identity = 156/265 (58.87%), Postives = 192/265 (72.45%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTH S+ S + P T KE+ + A IDFS D D GFMY T +G+ G + LVD+GA+ETM DDRLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE) HSP 1 Score: 281 bits (719), Expect = 3.290e-84 Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KESS-SKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTH S+ S + K T KE+ ++K+ IDFS D D GFMY T +G+ G + LVD+GA+ETM D+RLIP Sbjct: 155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE) HSP 1 Score: 281 bits (718), Expect = 7.330e-84 Identity = 155/265 (58.49%), Postives = 192/265 (72.45%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTH S+ S + P T KE+ + A IDFS D D GFMY T +G+ G + LVD+GA+ETM D+RLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE) HSP 1 Score: 278 bits (710), Expect = 9.360e-84 Identity = 158/265 (59.62%), Postives = 196/265 (73.96%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGTC-FGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KE-SSSKKSAIDFSADGDESDEGFMYATTHN---GKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG F C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTHXXXXS+ S + K T KE ++K+ IDFS D D GFMY T + G+ G + LVD+GA+ETM D+RLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXSTQSRDTHSKPTTTETPKEIEKTEKAEIDFSYDEDAFKGGFMYHATCSKAGGRTFTTTATGTSALVDSGASETMFDNRLIPN 397
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 282 bits (721), Expect = 2.900e-83 Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1 Query: 1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESS-SKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762 +++L T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+ TGKAFSACTH S+ S + P T KE+ ++K+ IDFS D D GFMY T +G+ G + LVD+GA+ETM D+RLIP Sbjct: 136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1013.110.1 >prot_H-paniculata_contig1013.110.1 ID=prot_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTback to top mRNA from alignment at H-paniculata_contig1013:24882..25697+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1013.110.1 ID=mRNA_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1013:24882..25697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1013:24882..25697+ >mRNA_H-paniculata_contig1013.110.1 ID=mRNA_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig1013:24882..25697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |