mRNA_H-paniculata_contig1013.110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1013.110.1
Unique NamemRNA_H-paniculata_contig1013.110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 1.680e-124
Identity = 190/260 (73.08%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSG--TCFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSN-DTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKE 771
            ME+L NT MEPGQNPDDYFN KHLLRHKV+KMGE ISDRYFKD+CVTGFT EYK+VKMIM+RDP+FNV+ MQTTM HM LDEQSRKGSKGGIAGRGF M T  S   TCFGCGE GHIRRNC ++RGKGR ++TKPAGA KWC  HFTTK+SDEECY QGAKRP      T KAFSAC H    SS S +K   TAKE+SS K+AID S DGDESDEGFMYATT  G EV+ N  G TLLV+ GATETM DDRLIP LK+
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKD 260          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 4.800e-115
Identity = 197/317 (62.15%), Postives = 225/317 (70.98%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSG--TCFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPA-TAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGAT------------------------------------------LLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAIT 816
            MEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D CVTGFT+EYKDVKMIMYRDPDFNVD+MQTTMRHMFLDEQSR G KG IAGRGFAM   TS   TCF CGE GHI RNC  KRGKG+ ++TKPAGAAKWCSVHFTT+HSDEEC+EQGA RP+KS++TGKA SAC       S S K   A T +E+SS ++ IDFSA+G ES+EGFMYA  H G+++K    GAT                                          LL+DTGA+E MLDD LIPGLKEIM+E+K+L KPK ++
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEG-ESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVS 430          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.510e-87
Identity = 153/274 (55.84%), Postives = 195/274 (71.17%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTH--NGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAI 813
            MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  M +TMR++FLDEQSRKG KG IAGRGFAMAT  S   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS H TT HSDEECY+QG KRPE + D+ K F+AC++    SSAS K       +S+++ + +DF+ D D  D GFM+AT    +G+    ++ G  L+VD+ A+ETM D+RLIP     + +Y Q   PK +
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKD------DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPDGN--LHDYTQRNSPKIV 420          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 3.530e-87
Identity = 154/265 (58.11%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPAT---AKESSSKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T    +   ++K+ IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM DDRLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.960e-86
Identity = 154/265 (58.11%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSK------KSAIDFSADGDESDEGFMY---ATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXX + S        K  + K      K+ +DFS D D    GFMY    +  +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXXTQSRDTHAKPTKRETPKETEKTEKAEVDFSYDEDTFKGGFMYHAICSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.340e-84
Identity = 156/265 (58.87%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM DDRLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 3.290e-84
Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KESS-SKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T   KE+  ++K+ IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 7.330e-84
Identity = 155/265 (58.49%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 9.360e-84
Identity = 158/265 (59.62%), Postives = 196/265 (73.96%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGTC-FGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KE-SSSKKSAIDFSADGDESDEGFMYATTHN---GKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG   F C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXXS+ S   + K   T   KE   ++K+ IDFS D D    GFMY  T +   G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXSTQSRDTHSKPTTTETPKEIEKTEKAEIDFSYDEDAFKGGFMYHATCSKAGGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.900e-83
Identity = 155/265 (58.49%), Postives = 194/265 (73.21%), Query Frame = 1
Query:    1 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATATSGT-CFGCGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESS-SKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 762
            +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CF C E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+  ++K+ IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1013.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI1.680e-12473.08CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE4.800e-11562.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE1.510e-8755.84CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE3.530e-8758.11Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KN28_9PHAE1.960e-8658.11Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5K3T5_9PHAE1.340e-8458.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE3.290e-8458.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z9_9PHAE7.330e-8458.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC59_9PHAE9.360e-8459.62gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5KHG5_9PHAE2.900e-8358.49Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1013contigH-paniculata_contig1013:24882..25697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size818
Cds size816
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928720.971927-CDS-H-paniculata_contig1013:24881..256971622928720.971927-CDS-H-paniculata_contig1013:24881..25697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1013 24882..25697 +
1691480593.7578833-CDS-H-paniculata_contig1013:24881..256971691480593.7578833-CDS-H-paniculata_contig1013:24881..25697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1013 24882..25697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1013.110.1prot_H-paniculata_contig1013.110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1013 24882..25697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1013.110.1

>prot_H-paniculata_contig1013.110.1 ID=prot_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFT
DEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMA
TATSGTCFGCGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHS
DEECYEQGAKRPEKSNDTGKAFSACTHCTHCSSASYKKGPATAKESSSKK
SAIDFSADGDESDEGFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDR
LIPGLKEIMQEYKQLVKPKAIT
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mRNA from alignment at H-paniculata_contig1013:24882..25697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1013.110.1 ID=mRNA_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1013:24882..25697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAACCCGGACGA CTACTTTAATCAGAAGCACCTCCTTCGACATAAGGTCCAGAAGATGGGGG AGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCACAGGATTCACC GACGAGTACAAAGACGTGAAGATGATCATGTACCGCGACCCAGACTTTAA CGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACGAACAAT CTCGCAAAGGATCCAAAGGTGGCATTGCCGGCCGCGGCTTCGCCATGGCC ACAGCCACATCGGGGACCTGTTTCGGATGCGGCGAGAATGGACACATCCG CAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGAATGCAGAGGACCAAGC CGGCGGGAGCCGCCAAGTGGTGCTCCGTTCACTTCACGACCAAACACTCC GACGAAGAATGCTACGAGCAAGGAGCGAAGCGGCCGGAAAAATCGAACGA CACGGGCAAGGCTTTCTCGGCATGTACGCACTGCACGCACTGCTCTTCAG CTAGCTACAAGAAGGGGCCAGCCACTGCGAAGGAGTCGAGCAGCAAGAAA TCCGCAATCGACTTTAGTGCGGACGGCGACGAGTCCGATGAAGGATTCAT GTACGCCACCACTCATAACGGCAAGGAAGTCAAAGTCAACACTGCAGGAG CCACCCTACTTGTAGACACCGGCGCAACAGAGACCATGCTCGACGACCGC CTCATCCCAGGCCTGAAGGAGATCATGCAAGAGTACAAGCAACTCGTGAA GCCGAAGGCCATCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1013:24882..25697+

>mRNA_H-paniculata_contig1013.110.1 ID=mRNA_H-paniculata_contig1013.110.1|Name=mRNA_H-paniculata_contig1013.110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig1013:24882..25697+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAACCCGGACGA
CTACTTTAATCAGAAGCACCTCCTTCGACATAAGGTCCAGAAGATGGGGG
AGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCACAGGATTCACC
GACGAGTACAAAGACGTGAAGATGATCATGTACCGCGACCCAGACTTTAA
CGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCTGGACGAACAAT
CTCGCAAAGGATCCAAAGGTGGCATTGCCGGCCGCGGCTTCGCCATGGCC
ACAGCCACATCGGGGACCTGTTTCGGATGCGGCGAGAATGGACACATCCG
CAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGAATGCAGAGGACCAAGC
CGGCGGGAGCCGCCAAGTGGTGCTCCGTTCACTTCACGACCAAACACTCC
GACGAAGAATGCTACGAGCAAGGAGCGAAGCGGCCGGAAAAATCGAACGA
CACGGGCAAGGCTTTCTCGGCATGTACGCACTGCACGCACTGCTCTTCAG
CTAGCTACAAGAAGGGGCCAGCCACTGCGAAGGAGTCGAGCAGCAAGAAA
TCCGCAATCGACTTTAGTGCGGACGGCGACGAGTCCGATGAAGGATTCAT
GTACGCCACCACTCATAACGGCAAGGAAGTCAAAGTCAACACTGCAGGAG
CCACCCTACTTGTAGACACCGGCGCAACAGAGACCATGCTCGACGACCGC
CTCATCCCAGGCCTGAAGGAGATCATGCAAGAGTACAAGCAACTCGTGAA
GCCGAAGGCCATCACGATGGAGGAGCTGGTCAACACGCCCATGGAGCCAG
GACAGAACCCGGACGACTACTTTAATCAGAAGCACCTCCTTCGACATAAG
GTCCAGAAGATGGGGGAGACCATCTCGGACCGCTACTTCAAGGATATATG
CGTCACAGGATTCACCGACGAGTACAAAGACGTGAAGATGATCATGTACC
GCGACCCAGACTTTAACGTCGACCAGATGCAGACCACCATGCGGCACATG
TTTCTGGACGAACAATCTCGCAAAGGATCCAAAGGTGGCATTGCCGGCCG
CGGCTTCGCCATGGCCACAGCCACATCGGGGACCTGTTTCGGATGCGGCG
AGAATGGACACATCCGCAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGA
ATGCAGAGGACCAAGCCGGCGGGAGCCGCCAAGTGGTGCTCCGTTCACTT
CACGACCAAACACTCCGACGAAGAATGCTACGAGCAAGGAGCGAAGCGGC
CGGAAAAATCGAACGACACGGGCAAGGCTTTCTCGGCATGTACGCACTGC
ACGCACTGCTCTTCAGCTAGCTACAAGAAGGGGCCAGCCACTGCGAAGGA
GTCGAGCAGCAAGAAATCCGCAATCGACTTTAGTGCGGACGGCGACGAGT
CCGATGAAGGATTCATGTACGCCACCACTCATAACGGCAAGGAAGTCAAA
GTCAACACTGCAGGAGCCACCCTACTTGTAGACACCGGCGCAACAGAGAC
CATGCTCGACGACCGCCTCATCCCAGGCCTGAAGGAGATCATGCAAGAGT
ACAAGCAACTCGTGAAGCCGAAGGCCATCACG
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