mRNA_H-paniculata_contig10127.106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig10127.106.1 vs. uniprot
Match: A0A6H5LE45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE45_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 2.840e-5 Identity = 73/196 (37.24%), Postives = 80/196 (40.82%), Query Frame = 2 Query: 140 GLSVEELKEMTKLRLQNQHGSHSG-----------RSSPKTALARP--SSALSDGRGGGGG--------LGH---DRAEWRHSLVADEMHRGVLAGDDVLPSA-GMVRRANSSVQLMLPSNMT----RDAGAGSAVGGRRVFHSSGGVGGVGVGRLEASLILEERMRAMQPEQA-------ATSPRILSQPSSPCF 619 GLSVE+LKE+TKLRLQ Q R SP T RP +SAL LGH +RAEWR S A RRANS L+ P G G RR F S+ G R+E LEERMR MQ E A SPRILSQPSSPCF Sbjct: 363 GLSVEKLKELTKLRLQQQXXXXXXXXXXXXXXXXXRGSP-TFTGRPLATSALGSSXXXXXXXXXXXXXXLGHHHNERAEWRRSGSAXXXXXXXXXXXXXXXXXXASFRRANS---LIAPRGGAVHGGEQQGGAPMHGSRRPFGSTNG-------RMEGPFGLEERMRVMQSETARGGXXXXGVSPRILSQPSSPCF 547 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10127.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10127.106.1 >prot_H-paniculata_contig10127.106.1 ID=prot_H-paniculata_contig10127.106.1|Name=mRNA_H-paniculata_contig10127.106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=834bp MTKLRLQNQHGSHSGRSSPKTALARPSSALSDGRGGGGGLGHDRAEWRHSback to top mRNA from alignment at H-paniculata_contig10127:90..6494+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10127.106.1 ID=mRNA_H-paniculata_contig10127.106.1|Name=mRNA_H-paniculata_contig10127.106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6405bp|location=Sequence derived from alignment at H-paniculata_contig10127:90..6494+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10127:90..6494+ >mRNA_H-paniculata_contig10127.106.1 ID=mRNA_H-paniculata_contig10127.106.1|Name=mRNA_H-paniculata_contig10127.106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5004bp|location=Sequence derived from alignment at H-paniculata_contig10127:90..6494+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |