mRNA_H-paniculata_contig10126.105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10126.105.1 vs. uniprot
Match: D7G4R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R8_ECTSI) HSP 1 Score: 286 bits (731), Expect = 3.700e-81 Identity = 217/523 (41.49%), Postives = 291/523 (55.64%), Query Frame = 1
Query: 1 RLERELGDERSVNARLKSELAHAQERLSELAASHQKLKFQALSLRNDLKERDKRLQLVGANRKKSEVQFRAAVARMELLLEEESRDSASALTGLRDQALLVKNRLSTQIDQLQASNSSLAEALSAAKVEMLELAHRAEAAQRDKDAATAAAVAREEVLRAELQQARARADTISHSLTETIREQSGLVAETANAKAAAEVLKARNRNEELERARAVGREQERTQASANPRPASTIPVNRWEPDIGGAFGIGMEKLLAGKLEEASAHVSEMRAMLRQEVQRREAAETEVSEAQRNLYSSQRELVELRNLARKLEQMSYSSIAHIDEKTRVIKQLEGRLRVGSIGTSVPGQEERSTS----------SVRHGQFDACRSDF---ERVRSPSRRRRRAP--FTCLKGNQGECMLAAIAGLRSSVAGVKTKLKDGKIDLDNFVRLCTEELGLRAKQLIYS-----------------------------------VKGISTVLFDTLGVVLPNALTGNSVVVGKQAEG 1419
RL EL +E+S +L SELA AQ+RL LA+SHQ+LKFQ L DL +RD+RLQL AN++KSE +FR AV RME L+E E++D A+A+ LRD+ALL K RLST++++L+ N L + ++ A+ EL R +AA + K+ AA AREE LRA +QAR RADT+S SL E IREQSGL+ ETANAK AAEVL+A++R E+ E +LA KL+EAS H+SE+R +LRQEV+RREAAE EVSEAQ L SS++EL ELR+LA KLEQM +S AH+D ++ + LEG L + +V G+E R + S+ G + RS+ E RRR P + KG Q LAA+AGLR+ + V T+L K + + FVR CTE + +R ++L + VKGIS++L D LGV +P L G V G++ EG
Sbjct: 185 RLNEELREEKSRGVKLSSELAQAQQRLDALASSHQELKFQTQCLEKDLTQRDRRLQLADANKRKSEARFREAVTRMESLMEGEAKDCAAAIKNLRDKALLAKERLSTEVERLRGDNGHLRKGIAVAEARGSELELRLQAALKSKETDATAAAAREEALRATAEQARTRADTMSQSLAEAIREQSGLLTETANAKVAAEVLEAKSRAAEV------------------------------------------ENMLAEKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQGYLKSSRQELGELRHLAWKLEQMGRNSFAHMDGNSQAVSHLEGELHARGVAGTVGGEEARRGANREEERKHGRSLPSGGWARGRSEGGGKEEAGLLCARRRSVPQALSSWKGGQ-RLFLAALAGLRAELRCVNTQLGKAKAENEEFVRHCTERVAVRVERLERAXXXXXXXXXXXXXXXXXXEAAGATDRKSADTLKRVVKGISSILLDRLGVAMPTCLDGGEDV-GERGEG 663
BLAST of mRNA_H-paniculata_contig10126.105.1 vs. uniprot
Match: A0A6H5KLZ7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ7_9PHAE) HSP 1 Score: 257 bits (656), Expect = 1.440e-69 Identity = 223/641 (34.79%), Postives = 312/641 (48.67%), Query Frame = 1
Query: 310 RLSTQIDQLQASNSSLAEALSAAKVEMLELAHRAEAAQRDKDAATAAAVAREEVLRAELQQARARADTISHSLTETIREQSGLVAETANAKAAAEVLKARNRNEELERARAVGREQERTQASANPRPASTIPVNRWEPDIGGAFGIGMEKLLAGKLEEASAHVSEMRAMLRQEVQRREAAETEVSEAQRNLYSSQRELVELRNLARKLEQMSYSSIAHIDEKTRVIKQLEGRLRVGSIGTSVPGQEERSTSSVRHGQFDACRSDFERVRSPSR--------------RRRRAP--FTCLKGNQGECMLAAIAGLRSSVAGVKTKLKDGKIDLDNFVRLCTEELGLRAKQLIYSV-----------------------------------KGISTVLFDTLGVVLPNALTGNSVVVGKQAEGALEQALSEFSSALADAMVKVEKNAKRVDVTQSEARPDG---ALKRRLHSMATLDSVVWGDSSKDDFNMLAQLQKIEVESELQSLRTRLENMTEKYSRAAAARDELDNSSVQEARERAEEELARAVRAHKMATSALESKLGAERSRCQDLRVRLERQTYKHHLLLAESNERMLHTQQQLDKVQQALDHTHFTLGRELARRVRLERK---LEENGIAPPPSV 2061
RLST++++L+ N L ++ A+ EL R +AA + K+ AA AREE LRA +QARARADT+S SL E +LA KL+EAS H+SE+R +LRQEV+RREAAE EVSEAQ AH+D ++ ++ LEG L + +V G E +R + + RS R+ R RRRR P + KG Q LAA+AGLR+ + V T+L K + + FVR CTE + +R ++L +V KGIS++L D L V +P L G G++ + LE+ L E ++A+ DA+ KV++ AK+ A+P G A + M+T+D +VWG+ SKDDFNMLAQLQKIE ES+LQSL+ RL++MTEKYSRA A ++ +D++ ++E +ERA++ELARA RAH SALE L AE+S CQDLR++LERQT +H + LA+ ++R+L TQ RE ARR RL++K LE+ G+ P SV
Sbjct: 299 RLSTEVERLRGENGHLMRGIADAEARGSELELRLQAALKSKEIDAAAGAAREEALRATAEQARARADTMSQSLAE---------------------------------------------------------------------------MLADKLQEASTHISELRTVLRQEVRRREAAEAEVSEAQ--------------------------GFAHMDGNSQAVRHLEGELHARGVAGTVGGGE-AGRGPLREEEREDGRSMLSGGRARGRSEGGGKEEAGLLCARRRRVPQGLSSWKGGQ-RLFLAALAGLRAELRCVNTQLGKAKAENEVFVRHCTERVAVRVERLERAVRQAGQKQAEAQRQASEAEAAGAIDRKSADTLKRVVKGISSILLDRLAVTMPTYLRGGEEA-GERGQEMLERGLEELTAAVTDALSKVKERAKQA----VPAQPHGDSLAPGNGRYCMSTVDGMVWGERSKDDFNMLAQLQKIEAESKLQSLQARLDDMTEKYSRAIADQETVDSTPLREEQERAKQELARAARAHSGIVSALEVTLAAEKSHCQDLRLKLERQTREHQVALADVDQRLLQTQXXXXXXXXXXXXXXXXXDRECARRARLDKKYSELEDRGLVSPRSV 831 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10126.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10126.105.1 >prot_H-paniculata_contig10126.105.1 ID=prot_H-paniculata_contig10126.105.1|Name=mRNA_H-paniculata_contig10126.105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=707bp MELLLEEESRDSASALTGLRDQALLVKNRLSTQIDQLQASNSSLAEALSAback to top mRNA from alignment at H-paniculata_contig10126:1427..8718- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10126.105.1 ID=mRNA_H-paniculata_contig10126.105.1|Name=mRNA_H-paniculata_contig10126.105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7292bp|location=Sequence derived from alignment at H-paniculata_contig10126:1427..8718- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10126:1427..8718- >mRNA_H-paniculata_contig10126.105.1 ID=mRNA_H-paniculata_contig10126.105.1|Name=mRNA_H-paniculata_contig10126.105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4242bp|location=Sequence derived from alignment at H-paniculata_contig10126:1427..8718- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |