mRNA_H-paniculata_contig1012.102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI) HSP 1 Score: 674 bits (1740), Expect = 8.530e-225 Identity = 475/969 (49.02%), Postives = 600/969 (61.92%), Query Frame = 1
Query: 1 GKSKKAAAAQATVEAMKADMDDLFNRVEALAASSRRREKAQVVKDRTTVLAGQMELNRIQLAVDSRVTSDELQQAVSSNADKLVALQSSVDTALNDRFRRMQGVVHEQMAGLLQMVQDLIQQQQSMGIRGSGILHRSSDHKRNLG---NTFDSLPDDSDEEQQGRFKSAVTDIVQRLLREAEEKQGL------LSAFEALQQEDHETFKSQMEEKADRQDHIASTLDDTVVRLEDGETKITAITAQMESSAEETQEMLGESMERXXXXXXXXXXXXXLAADAHLECAATRALVGDSKREALAEAKQEAESIAARAEGRAKAEVQKAKGDARTASENLSERFRRLSKKMTDDAEVSKAAVSAVRDLSQKAIAAAESANARAVEGELSLDRIEANLGVQLHEITRTQTESTKDMLKRFDEGDAQLCEARDNLRRLIIQNQGDLEALQCELTSLGEMARQGMIQNLRIEVQDALFTMVTEQ--VSSHSNAGGGRSGXXXXXXXXXXXXXXNSGGGV-------GGSEPEGRT---------------LSSLGAALRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATTENRTRITLPKEAQNCLAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEIRGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKACVACDRPFTPSITGKPGPTPAGGVSGAAVEPANLPDENSYITKDTFRPHTSHGRLGSSSRSTSSPDLLEPQTSVYSVMPGGRASPQSPHVFRGGFKLPKHMKSPLHAPCEGGNQSPEGIGHNSSLLHKSQTMTGLCPGIRDGRPSTSGGMRNKGRPPSSPAPHGLYP------SPGGQMRVEENGSVVSAFTMQTEASRTIGEVGGRGGRNRLDLEKGPA 2790
G KKAAAA A AM+A++ DL +R+EALA+S +RREKAQ ++++T LA ME+ RIQ+A++SRVTSD+LQ AVS+ DK+VA+QSSV++AL+DRFRRMQ VVH+QMA LL MVQ L Q Q +GSG + + G + F AV D V+R+L+E G ++ FE+LQ ED+ EKADRQD I+S+L+D E ++A+ ++E S+++T XXXXXXXXXXXXX CAA R LVGDS+RE A+A+QEAE+I ARA +A+E + +R KK D+AE + AV+ R LS+KA+A A +A ARA E + L + E +G +L + + QT + +D L+R G+++L A LRRLI N ++ L+ + LGE + Q Q LR EVQDAL TMV +Q + S S+ XX XXXXXX NS GGV GGS R+ L+ LG ALR+QG+D Q V TLQRSSVGI TV+RK+EAG+H LSTKD+FW+ VD+KL AH R+VG+VCL+VEDAT R+RITL KEAQ CLAGDMQRVAKL+A KADYEVIRE+AKLDTPEQT WDERVE+LRQ+ +RRF K+CRDALDK APE+RTNFNGEEIRGKF GKL+DAL+VALSK+SPTTPG TLFGKIKLK NS+ITKDTFRPHTSHGRLGS SRS S +L EP +S++SVM G R+S SPHV+RGGFKLPKH+KSPLH P +G +QS GIGH S LLHKSQ+MTGL +GRPSTSGG+R K RPP++ H P P ++ S++SAFT +TE + G G RL + PA
Sbjct: 126 GLRKKAAAASA---AMQAEVRDLSDRLEALASSCKRREKAQGIREKTNALAQSMEIKRIQMAIESRVTSDDLQLAVSAADDKIVAVQSSVESALSDRFRRMQDVVHQQMASLLSMVQGLTQSQARR--KGSGPYVNARGNLSGGGYXXXXXXXXXXXXXASEAETFNKAVKDAVERVLQEGRISGGSGQGDVKMADFESLQ-EDYXXXXXXXXEKADRQDAISSSLEDAQXXXXXXEANLSALAEELEHSSQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAALRLLVGDSRREGQADARQEAEAITARAXXXXXXXXXXXXXXXXSATEKVGSELKRHIKKSEDEAEGFQGAVAGTRALSEKAMAGATAAAARADECDALLQKAETRMGKRLDKAVQNQTTAIEDTLERVAAGESELARAESELRRLIASNGAEIMDLRTGQSVLGESSEQATEQ-LREEVQDALTTMVIDQDFIDSPSSXXXXXXXXXRTGXXXXXXGSDNSRGGVRFEASHGGGSGNNYRSNDFVDRSASDVARLSLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKLK----------------------------------------NSHITKDTFRPHTSHGRLGSPSRSGSI-ELFEPHSSIHSVMSGSRSSSHSPHVYRGGFKLPKHLKSPLHLP-DGEDQSAFGIGHASPLLHKSQSMTGLGSHNNNGRPSTSGGVRQKRRPPNAGKFHTSSPPATGDGDPDAGLQDGGGNSIISAFTARTEYAAATPNAG-ESGAERLGFDDPPA 1044
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: A0A836CLL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL5_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.210e-46 Identity = 130/337 (38.58%), Postives = 174/337 (51.63%), Query Frame = 1
Query: 1555 LRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATTENRTRIT------------------LPKEAQNCLAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEIRGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKACVACDRPFTPSITGKPGPT--PAGGVSGAAVEPANLPDENSYITKDTFRPHTSHG----RLGSSSRSTSSPDLLEPQTSVYSVMPGG-----------RASPQSP--HVFRGGFKLPKHMK 2454
LR + + LQRS V A +R++E +L++K +FW+ DIKL AH+ V V L+VE A L +A LAG+ QRVAKL+A KADYEVIR +++ + P H WD RVE LR + L +F+ + R+ L KRAP E RG+F ++ ALRVALSK+ PTTPG TLFG++++ A+ACVACDRPF + G P P GG AA PA LP E S ++ FRP T G R G +E + ++ V P G + Q P +V+RGGFKLPKH +
Sbjct: 699 LRAHAAEGADALEALQRSGVANALALRRVETAFQSLASKGLFWESTDIKLAAHVEEVARVSLQVEAAAXXXXXXXXXXXXXXXXXXSAPPGAPHLAPDALRVLAGNTQRVAKLIAAKADYEVIRLVSRAEDPGAEGHDWDARVETLRGAFLAQFSADARNVLRKRAPHQGPA--AEAARGRFLARVDGALRVALSKYRPTTPGATLFGRVRVVAQACVACDRPFATAADGLPCAVSAPPGGNHAAAKPPA-LPTETSIAVRNNFRPSTCTGSPTKRSGGGVEVNGDDGDVESEVPLH-VAPFGFGXXXXXXXXXXSDVQKPQAYVYRGGFKLPKHSQ 1031
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK) HSP 1 Score: 144 bits (362), Expect = 6.760e-35 Identity = 89/232 (38.36%), Postives = 133/232 (57.33%), Query Frame = 1
Query: 1549 AALRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATTENRTRITLPKEAQNCLAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEI----RGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKACVACDRPFTPSITGKPGPTPAGGVSGAA 2232
A LR++ + + +RSSVG+A + R+ E + +++K +FW+ + +L+AHL+ GD C E+E A + +L EAQ LAG+ QRVAKL+ +AD+E IR+++ PE D WD +V+ LRQ FT+ A + + +G+ + R +F KL A+R+ALSKF+ PG TLFGK + AC+ACDRPFT PGP G++GAA
Sbjct: 22 AELRRRARAAEESCGRTERSSVGLAALCRQAEGQVRAIASKSLFWEALQARLQAHLKGFGDRCCELE-ANSSAAHAFSLSPEAQRYLAGNAQRVAKLVGQRADFETIRQVSTSRHPE--DEDWDTKVDQLRQKYRAEFTQ------GVEAYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPFTSD----PGP----GLAGAA 236
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI) HSP 1 Score: 109 bits (273), Expect = 7.350e-21 Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = 1
Query: 1537 SSLGAALRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATTENRTRITLPKEAQNCLAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEIRGKFFGKLTDALRV 2076
+ + A+R+Q Q + ++R+++ + +++KLE L LS++D+FW+ V KLKAH + D VE AT+E + R L E Q +AG+ QRVAKL+ KAD+EVI+++ E+ WD RV+ +R S L F R LD++ P G R +FF KL L+V
Sbjct: 543 AKVATAVREQQQRREESSRRVERANLSLTLLVKKLERSLFVLSSRDLFWEEVGTKLKAHAEAFADASCRVE-ATSEEQDRFVLTVELQQYIAGNTQRVAKLICQKADFEVIQKLTASTNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYPSHGPF--GARNRDRFFVKLEQGLKV 719
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: D7G4P4_ECTSI (Myosin-like antigen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P4_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.150e-20 Identity = 66/195 (33.85%), Postives = 108/195 (55.38%), Query Frame = 1
Query: 1588 VVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATTENRTRITLPKEAQNCLAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEIRGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKACVACDRPF 2172
+ +L+RS+V + T MR+L+ L L+TK+ W ++++ K H++ +G ++E A T +L Q ++ Q VAK++AT+ADYEV R+ P + D WD +VE LR + +F + K P + EE+R F KL ++++A+SK+ P G T+ GK+ L +C+ACDRPF
Sbjct: 151 MTSLERSNVSVVTTMRRLQRSLDALATKEGRWDRLEVQTKRHVQVLGGHLADLEGAATCAEP-FSLGPAMQKHVSAVSQMVAKIVATRADYEVTRQAVNRKNPGE-DSDWDRKVEELRIRFMNKFVSDVVQVASKLRPL--PDRPVEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHL-LPSCMACDRPF 340
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: A0A6H5L1L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L3_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.340e-19 Identity = 76/251 (30.28%), Postives = 124/251 (49.40%), Query Frame = 1
Query: 1525 GRTLSSLGAALRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEVEDATT---------------ENRTRITLPKEAQNC------------LAGDMQRVAKLLATKADYEVIREIAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGEEIRGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKACVACDRPFT-PSITGK 2193
G+T +L + + ++V+L+RS+V + T MR+L+ L L+TK+ W ++++ K H++ +G ++E A T N T K + C L+ Q VAK++AT+ADYEV R+ P + D WD +VE LR + +F + K P + EE+R F KL ++++A+SK+ P G T+ GK+ L +C+ACDRPF P+I G+
Sbjct: 176 GKTSKNLVKDIDNLKAENGDRMVSLERSNVSVVTTMRRLQRSLDALATKEGRWDRLEVQTKRHVQVLGGHLADLEGAATCAEPFRPHHHLTPLSSNEFLATRRKASAVCVPLSLSPAMQKHLSAVSQMVAKIVATRADYEVTRQAVNRKNPGE-DSDWDRKVEELRIRFMNKFVSDVVQVASKLRPL--PDRPVEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHL-LPSCMACDRPFIGPAIRGR 422
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Match: W7TB27_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB27_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.490e-15 Identity = 72/232 (31.03%), Postives = 116/232 (50.00%), Query Frame = 1
Query: 1531 TLSSLGAALRKQGQDMTQQVVTLQRSSVGIATVMRKLEAGLHTLSTKDIFWQVVDIKLKAHLRSVGDVCLEV----------EDATTENRTR-ITLPKEAQNCLAGDMQRVAKLLATKADYEVIRE-IAKLDTPEQTDHSWDERVEYLRQSCLRRFTKECRDALDKRAPELRTNFNGE-----EIRGKFFGKLTDALRVALSKFSPTTPGETLFGKIKLKAKA-CVACDRPF 2172
++ L L Q + T Q++ L++ G++ +L + L T+ W +D++L+ + S+ C + D + + R + L KE + +A R+AK +A KADY++IR + DT TD+ D ++ R++ L RF KRA E+ + G EI +F KL A+R+ALSKFS G +LFGKI L+A+A C+AC+R F
Sbjct: 73 SIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQGRGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDT--LTDNQCDAKILQSRETYLMRFLGGV-----KRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQF 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1012.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1012.102.1 >prot_H-paniculata_contig1012.102.1 ID=prot_H-paniculata_contig1012.102.1|Name=mRNA_H-paniculata_contig1012.102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=930bp GKSKKAAAAQATVEAMKADMDDLFNRVEALAASSRRREKAQVVKDRTTVLback to top mRNA from alignment at H-paniculata_contig1012:670..16809- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1012.102.1 ID=mRNA_H-paniculata_contig1012.102.1|Name=mRNA_H-paniculata_contig1012.102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16140bp|location=Sequence derived from alignment at H-paniculata_contig1012:670..16809- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1012:670..16809- >mRNA_H-paniculata_contig1012.102.1 ID=mRNA_H-paniculata_contig1012.102.1|Name=mRNA_H-paniculata_contig1012.102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5580bp|location=Sequence derived from alignment at H-paniculata_contig1012:670..16809- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |