mRNA_H-paniculata_contig101.87.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 298 bits (763), Expect = 4.180e-102 Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVAH-GDSGFGSKSS 468 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVG+DS+DENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKP+ LMD +H GDS FGSKSS Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 276 bits (706), Expect = 1.980e-93 Identity = 136/156 (87.18%), Postives = 148/156 (94.87%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKV-AHGDSGFGSKS 465 MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV S++ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKP+ LMDKV A+ D+GFGSKS Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 237 bits (604), Expect = 6.080e-78 Identity = 112/154 (72.73%), Postives = 134/154 (87.01%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVAHGDSGFGSK 462 MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRRYASLFFIVGVG D +ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+ MDK+A+ + S+ Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVGAD--EENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 226 bits (577), Expect = 7.890e-74 Identity = 106/144 (73.61%), Postives = 127/144 (88.19%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVA 435 I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRRYASLFFIVG DSE NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+K + Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGCEQDSE--NELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 224 bits (571), Expect = 6.470e-73 Identity = 104/154 (67.53%), Postives = 130/154 (84.42%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVAHGDSGFGSK 462 MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRRYASLFF+V V D E+ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG I E N+ N+LKP+ LMDK+A + G S+ Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 223 bits (568), Expect = 1.790e-72 Identity = 105/144 (72.92%), Postives = 126/144 (87.50%), Query Frame = 1 Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVA 435 IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRRYASLFFIVGV D + ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+K + Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 223 bits (567), Expect = 4.470e-72 Identity = 107/166 (64.46%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSED------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVAHGDSGFGSK 462 MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRRYASLFFIVGV D ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG+I + N+ N+LKP+HLM+K + + S+ Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGVEGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIFSR 166
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA) HSP 1 Score: 221 bits (563), Expect = 8.210e-72 Identity = 106/143 (74.13%), Postives = 126/143 (88.11%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDK 429 MIKFVLMVNK GQTR++ YYD++ I ERVALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVGV D + ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+HLM+K Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 220 bits (561), Expect = 1.660e-71 Identity = 103/145 (71.03%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVA 435 MIKFVLMVNK GQTR+SSYY+W+ I ER ALEAE++R+C +R+E QCSF E RGYK++YRRYASLFFIVGV D ++ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++D ++ Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 221 bits (563), Expect = 2.070e-71 Identity = 110/154 (71.43%), Postives = 130/154 (84.42%), Query Frame = 1 Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGMDSEDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPMHLMDKVAHGDSGFGSK 462 M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVG+ ++ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP+ LM+K A DS F SK Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig101.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig101.87.1 >prot_H-paniculata_contig101.87.1 ID=prot_H-paniculata_contig101.87.1|Name=mRNA_H-paniculata_contig101.87.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFback to top mRNA from alignment at H-paniculata_contig101:23055..24322- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig101.87.1 ID=mRNA_H-paniculata_contig101.87.1|Name=mRNA_H-paniculata_contig101.87.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1268bp|location=Sequence derived from alignment at H-paniculata_contig101:23055..24322- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig101:23055..24322- >mRNA_H-paniculata_contig101.87.1 ID=mRNA_H-paniculata_contig101.87.1|Name=mRNA_H-paniculata_contig101.87.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig101:23055..24322- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |