mRNA_H-paniculata_contig10097.81.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10097.81.1
Unique NamemRNA_H-paniculata_contig10097.81.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10097.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10097contigH-paniculata_contig10097:531..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size604
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10097.81.1prot_H-paniculata_contig10097.81.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10097 612..986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928716.2716215-UTR-H-paniculata_contig10097:530..6111622928716.2716215-UTR-H-paniculata_contig10097:530..611Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10097 531..611 +
1691480591.2778451-UTR-H-paniculata_contig10097:530..6111691480591.2778451-UTR-H-paniculata_contig10097:530..611Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10097 531..611 +
1622928716.3084333-UTR-H-paniculata_contig10097:986..11341622928716.3084333-UTR-H-paniculata_contig10097:986..1134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10097 987..1134 +
1691480591.3080747-UTR-H-paniculata_contig10097:986..11341691480591.3080747-UTR-H-paniculata_contig10097:986..1134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10097 987..1134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928716.2879922-CDS-H-paniculata_contig10097:611..9861622928716.2879922-CDS-H-paniculata_contig10097:611..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10097 612..986 +
1691480591.29962-CDS-H-paniculata_contig10097:611..9861691480591.29962-CDS-H-paniculata_contig10097:611..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10097 612..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10097.81.1

>prot_H-paniculata_contig10097.81.1 ID=prot_H-paniculata_contig10097.81.1|Name=mRNA_H-paniculata_contig10097.81.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MFYPHRALRAQPFPCRISPEIDPARYLGPRYFPPRRFCGVWSYPRESPKH
VCASSQAVRATEGKFGAFVPQAARYVGILCWKRCLKLIVSELSGISRSCS
VCAYPGPLRVGVWECPETQGGPML*
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mRNA from alignment at H-paniculata_contig10097:531..1134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10097.81.1 ID=mRNA_H-paniculata_contig10097.81.1|Name=mRNA_H-paniculata_contig10097.81.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at H-paniculata_contig10097:531..1134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACAATGTTCTGGTACAAGGGGACGCCGATTAGAGGTCTGGCTGAG
TAGAATAAGGTGTGAGGTTTTGTGCCCAAGTATGTTTTATCCGCATCGCG
CCTTACGCGCACAGCCATTCCCATGTAGGATCTCACCCGAGATTGATCCA
GCTAGGTATCTTGGTCCTCGGTATTTCCCTCCCCGGAGGTTTTGTGGAGT
TTGGTCATATCCCCGCGAGTCGCCAAAACATGTTTGTGCCTCAAGTCAAG
CTGTTCGCGCCACCGAAGGTAAATTCGGTGCTTTCGTTCCTCAGGCGGCG
AGATATGTTGGAATACTCTGTTGGAAACGTTGCCTGAAATTAATAGTGTC
TGAGCTTTCGGGAATATCTCGGTCATGTAGCGTGTGTGCTTATCCGGGTC
CACTTCGGGTTGGAGTGTGGGAGTGTCCCGAAACGCAGGGTGGACCAATG
TTATGAGATATTGATTGCGGGACGTGACAGTCATTGTCTAAAGTGAAGGT
TCCATCTCCAATCCCCAGAGTTATGTAATGTAGCCCTAGTTTGAGCTGGG
AGCGGGAATCACGCAACGTGTTGCCGCCCCACCAGCTGTCTGACTTGTAT
CAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig10097:531..1134+

>mRNA_H-paniculata_contig10097.81.1 ID=mRNA_H-paniculata_contig10097.81.1|Name=mRNA_H-paniculata_contig10097.81.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig10097:531..1134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTATCCGCATCGCGCCTTACGCGCACAGCCATTCCCATGTAGGAT
CTCACCCGAGATTGATCCAGCTAGGTATCTTGGTCCTCGGTATTTCCCTC
CCCGGAGGTTTTGTGGAGTTTGGTCATATCCCCGCGAGTCGCCAAAACAT
GTTTGTGCCTCAAGTCAAGCTGTTCGCGCCACCGAAGGTAAATTCGGTGC
TTTCGTTCCTCAGGCGGCGAGATATGTTGGAATACTCTGTTGGAAACGTT
GCCTGAAATTAATAGTGTCTGAGCTTTCGGGAATATCTCGGTCATGTAGC
GTGTGTGCTTATCCGGGTCCACTTCGGGTTGGAGTGTGGGAGTGTCCCGA
AACGCAGGGTGGACCAATGTTATGAATGTTTTATCCGCATCGCGCCTTAC
GCGCACAGCCATTCCCATGTAGGATCTCACCCGAGATTGATCCAGCTAGG
TATCTTGGTCCTCGGTATTTCCCTCCCCGGAGGTTTTGTGGAGTTTGGTC
ATATCCCCGCGAGTCGCCAAAACATGTTTGTGCCTCAAGTCAAGCTGTTC
GCGCCACCGAAGGTAAATTCGGTGCTTTCGTTCCTCAGGCGGCGAGATAT
GTTGGAATACTCTGTTGGAAACGTTGCCTGAAATTAATAGTGTCTGAGCT
TTCGGGAATATCTCGGTCATGTAGCGTGTGTGCTTATCCGGGTCCACTTC
GGGTTGGAGTGTGGGAGTGTCCCGAAACGCAGGGTGGACCAATGTTATGA
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