mRNA_H-paniculata_contig10092.77.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10092.77.1
Unique NamemRNA_H-paniculata_contig10092.77.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: D8LIB5_ECTSI (Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB5_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.290e-63
Identity = 105/164 (64.02%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:  433 GTAHKKRRGSAAAKSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGG 924
            G A  +  G A  K KK   YIQIEDLESDSWRL+EA  IL +GGVGVIPTDTCYTFACDILSRKG+ERI+QIK++QGR KPLSLLCKDISTM+TYA GIDK                       VPRMLI+HKHHKKTWKR+EIG+R+P++PVL++LL  L G
Sbjct:   19 GDATARAAGRAGTKQKKAALYIQIEDLESDSWRLIEAGNILRKGGVGVIPTDTCYTFACDILSRKGVERILQIKNEQGRHKPLSLLCKDISTMNTYAKGIDK-----------------------VPRMLIEHKHHKKTWKRKEIGIRLPNAPVLLDLLQQLDG 159
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A835YZP2_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.310e-60
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 1 
Query:  424 KAMGTAHKKRRGSAAAKSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQ------------VPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVPSAI 957
            +A GT   K RG+AA+K  +    ++++    D+W+L    E L  GGVGV+PTDTCY FACD+ SR+G++RI Q+K   G++KPLSLLCKDIST+S ++DGIDK LFK +K ALPGP+TF++P+ +Q            VPRML+DHK HKKTWKRRE+GVR+PD PVL  +L  L  PL+CSSVP+ +
Sbjct:   45 RAAGT---KSRGAAASKCLQ----VEVDPEGFDNWKLAPIIETLQNGGVGVLPTDTCYVFACDVHSRRGVDRIFQLKQYVGKRKPLSLLCKDISTISKHSDGIDKDLFKVLKRALPGPYTFIVPATHQARTSMSDNHTARVPRMLLDHKSHKKTWKRREVGVRIPDQPVLHAVLEALENPLICSSVPARL 227
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S0G7E3_9RHOD (Threonylcarbamoyl-AMP synthase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7E3_9RHOD)

HSP 1 Score: 185 bits (470), Expect = 4.690e-53
Identity = 85/161 (52.80%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:  472 KSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGR--KKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVP 948
            KS+ E  YIQ+ED + D++++  A +IL +GGVGVIPTDTCY FAC + SR GI R+  +K   G   KKPLSLLC+D++ + TY   +D+ LFK +K  LPGP+T++LP+++QVPRM+I+HK H+K+WKR+EIGVR+PD P    +L  +  PLL S VP
Sbjct:   82 KSRTEIDYIQVEDPQYDAYKIDSAVQILKQGGVGVIPTDTCYAFACALSSRDGINRLYSLKKTDGGPVKKPLSLLCRDLAMVQTYVHSMDRRLFKLLKSTLPGPYTYILPASSQVPRMVIEHKSHRKSWKRKEIGVRIPDDPYAQAVLGRVDEPLLISGVP 242
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S4D661_HETAK (Threonylcarbamoyl-AMP synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D661_HETAK)

HSP 1 Score: 173 bits (438), Expect = 4.720e-48
Identity = 76/157 (48.41%), Postives = 108/157 (68.79%), Query Frame = 1 
Query:  484 EPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVPSA 954
            +P Y+QIED   D WRL    +++ +G VGVIPTDT Y F CD+ +  G+ER+M++K  +  KKPL+LLCKDIS +S Y    DK +FK +K   PGP+T ++ ++ +VP+  ++ K H++ WKRRE+GVR+PD  V   +L  L  PLLCSSVPS+
Sbjct:   61 DPLYVQIEDPSYDGWRLDPVIDLIKQGAVGVIPTDTSYAFVCDVHNTNGVERMMRLKHAESVKKPLALLCKDISMISKYTKSTDKTVFKLLKQCFPGPYTLIMSASPEVPKGFVESKTHRRLWKRREVGVRVPDQEVCSLILSELDDPLLCSSVPSS 217
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S0L1I6_9EUKA (Threonylcarbamoyl-AMP synthase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L1I6_9EUKA)

HSP 1 Score: 170 bits (431), Expect = 6.960e-48
Identity = 91/179 (50.84%), Postives = 119/179 (66.48%), Query Frame = 1 
Query:  451 RRGSAAAKSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVPSAIPTDGSDFSFH 987
            RR SAA  S     YI +E   SDSWR   A + L  GGVGV+PTDT Y F   + S++G+ERI+ +K  +  KKPLSLLC D+ST+  YA GIDKALFK  +  LPGP+TF+LP+ N VP+ +  H   K+T KRRE+G+R+PD PVL ++L  L  PLLCS+VP++   +GS    H
Sbjct:   45 RRSSAAPAST----YIVVESDGSDSWRAEAALDALRNGGVGVLPTDTSYAFVAPLSSKRGVERILALKGIEAGKKPLSLLCADLSTVDRYAAGIDKALFKLFRGCLPGPYTFILPARNSVPKTV--HADGKRT-KRRELGIRVPDDPVLAQMLAQLDEPLLCSTVPTS--EEGSQLVCH 214
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S0EEL6_9CRYP (Threonylcarbamoyl-AMP synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EEL6_9CRYP)

HSP 1 Score: 169 bits (429), Expect = 6.200e-47
Identity = 85/178 (47.75%), Postives = 118/178 (66.29%), Query Frame = 1 
Query:  460 SAAAKSKKE--PQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQG-RKKPLSLLCKDISTMSTYADGID-KALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVPSAIPTDGSDFS 981
            S AAKS++E  P +++IED+   +W+L   A IL  GG+G++PTDT Y F   I SR+G+ R+  +K Q   +KKP ++LC  IS +S Y   I+ K++FK +K  LPGP+TF+ PS N +PRM+IDHK H K WKR+EIGVR+P   V +EL+  +G PLLC+ V     TD   FS
Sbjct:   41 SRAAKSRQEAGPVFVEIEDIGHGAWKLDPVAAILKEGGLGIVPTDTSYAFVTSIESREGVSRLYDLKQQDSIKKKPFAILCDSISQISKYTTAINFKSVFKMLKEVLPGPYTFICPSTNDLPRMIIDHKKHAKIWKRKEIGVRIPKDQVCLELISKVGTPLLCAGVHK---TDEESFS 215
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: L1JNX7_GUITC (Threonylcarbamoyl-AMP synthase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNX7_GUITC)

HSP 1 Score: 168 bits (426), Expect = 1.460e-46
Identity = 80/164 (48.78%), Postives = 110/164 (67.07%), Query Frame = 1 
Query:  460 SAAAKSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQG-RKKPLSLLCKDISTMSTYADGID-KALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSV 945
            SA +K    P +++IED+   +WRL   AE L  GG+G+IPTDT Y F   I SR G+ R+ ++K Q   +KKP S+LC  IS +S Y   I+ K++FK +K  LPGP+TF+ PS N +PRM+IDHK H K WKR+EIGVR+P   V ++L+  +G PLLC+ V
Sbjct:   37 SAKSKPAASPVFVEIEDIGHSAWRLDSIAETLREGGLGIIPTDTSYAFVTSIESRDGVSRLYELKQQDSIKKKPFSILCDSISQISKYTTAINFKSVFKMLKEVLPGPYTFICPSTNDLPRMIIDHKKHAKIWKRKEIGVRIPKDEVCLQLIGKVGTPLLCAGV 200
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S0ZI44_9RHOD (Threonylcarbamoyl-AMP synthase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI44_9RHOD)

HSP 1 Score: 168 bits (426), Expect = 1.460e-46
Identity = 75/166 (45.18%), Postives = 117/166 (70.48%), Query Frame = 1 
Query:  448 KRRGSAAAKSKKEPQYIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSV 945
            KR GSA+  + K  +Y+ I + E D W+L    ++L  G +G+IPTD+ Y+F C + +R+G++RI Q+K+  G KKPLSL+C ++S +  Y   IDK +FK ++ ALPGP+TF+LP+N+ VPR++++HK H+K WKRRE+G+R+P+    + +L  L  PLL SS+
Sbjct:   41 KRSGSAS--TAKVAEYVDITEGEYDLWKLDSIPKMLKEGALGIIPTDSSYSFVCTMSNREGMDRIYQLKNLSGTKKPLSLICSNLSMVQKYTHSIDKPMFKMLRAALPGPYTFILPANSSVPRVILEHKVHRKVWKRREVGIRVPNDMYCLAILEQLEEPLLVSSI 204
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S2TTY3_9EUKA (Threonylcarbamoyl-AMP synthase n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TTY3_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 3.160e-46
Identity = 77/153 (50.33%), Postives = 109/153 (71.24%), Query Frame = 1 
Query:  496 IQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKS-QQGRKKPLSLLCKDISTMSTYADGID-KALFKTMKVALPGPFTFVLPSNNQVPRMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVP 948
            I++E  E D W+L  A + +  GG+ V+PTD+CY F  D+ S++ ++RI  +K+     KKPLSLLC  IS +S Y  G+  KA FK +K  LPGP+T++LP++N++PRM+++HK HKK WKR+EIGVR+PD PV  E L  +G P+LCSSVP
Sbjct:   25 IEVEG-EWDFWKLDSAVKAVKEGGIVVLPTDSCYAFVADVNSKEAVQRIYALKNIDPETKKPLSLLCHSISQISDYTSGMQSKAAFKILKSTLPGPYTYILPASNKLPRMILEHKEHKKVWKRKEIGVRVPDDPVCQEFLKLIGNPVLCSSVP 176
[Close]
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Match: A0A7S0AH78_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH78_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.130e-44
Identity = 80/155 (51.61%), Postives = 110/155 (70.97%), Query Frame = 1 
Query:  493 YIQIEDLESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQGRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVPRML-IDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGG-PLLCSSVPS 951
            YI+ E   SD+WR  +  +IL RGGVG +PTDT Y F   I S+ G+ERI+++K   G KKPLSLLC D++T+  Y  GID+  FKT+K A PGP+T +LP+++Q+P+M+ +D+K  K +W R+ +GVRMPD PVL  +   LGG PLL SSVP+
Sbjct:  116 YIECESDGSDAWRCADITDILRRGGVGCLPTDTGYGFVTTIDSKAGLERILKMKGYLGCKKPLSLLCNDLATIDQYCYGIDRQTFKTLKAAFPGPYTIILPASSQLPKMMFLDNKGGKHSWARKSLGVRMPDDPVLRYVQEELGGTPLLVSSVPN 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10092.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB5_ECTSI2.290e-6364.02Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus ... [more]
A0A835YZP2_9STRA1.310e-6053.68Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema m... [more]
A0A7S0G7E3_9RHOD4.690e-5352.80Threonylcarbamoyl-AMP synthase (Fragment) n=1 Tax=... [more]
A0A7S4D661_HETAK4.720e-4848.41Threonylcarbamoyl-AMP synthase n=1 Tax=Heterosigma... [more]
A0A7S0L1I6_9EUKA6.960e-4850.84Threonylcarbamoyl-AMP synthase (Fragment) n=1 Tax=... [more]
A0A7S0EEL6_9CRYP6.200e-4747.75Threonylcarbamoyl-AMP synthase n=1 Tax=Hanusia phi... [more]
L1JNX7_GUITC1.460e-4648.78Threonylcarbamoyl-AMP synthase n=2 Tax=Guillardia ... [more]
A0A7S0ZI44_9RHOD1.460e-4645.18Threonylcarbamoyl-AMP synthase n=1 Tax=Timspurckia... [more]
A0A7S2TTY3_9EUKA3.160e-4650.33Threonylcarbamoyl-AMP synthase n=2 Tax=Lotharella ... [more]
A0A7S0AH78_9STRA1.130e-4451.61Threonylcarbamoyl-AMP synthase n=1 Tax=Minutocellu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10092contigH-paniculata_contig10092:776..8536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog55529.EKX50266
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.L-threonylcarbamoyladenylate synthase
EggNOG OGsCOG0009@1,KOG3051@2759
Ec32 ortholog descriptiontranslation factor
Ec32 orthologEc-24_001520.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1070
Cds size1005
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.792428-UTR-H-paniculata_contig10092:775..8381622928715.792428-UTR-H-paniculata_contig10092:775..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10092 776..838 +
1691480590.9908476-UTR-H-paniculata_contig10092:775..8381691480590.9908476-UTR-H-paniculata_contig10092:775..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10092 776..838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.81463-CDS-H-paniculata_contig10092:838..13051622928715.81463-CDS-H-paniculata_contig10092:838..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 839..1305 +
1691480591.001876-CDS-H-paniculata_contig10092:838..13051691480591.001876-CDS-H-paniculata_contig10092:838..1305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 839..1305 +
1622928715.8315973-CDS-H-paniculata_contig10092:3410..35191622928715.8315973-CDS-H-paniculata_contig10092:3410..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 3411..3519 +
1691480591.0110846-CDS-H-paniculata_contig10092:3410..35191691480591.0110846-CDS-H-paniculata_contig10092:3410..3519Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 3411..3519 +
1622928715.8463686-CDS-H-paniculata_contig10092:5514..56131622928715.8463686-CDS-H-paniculata_contig10092:5514..5613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 5515..5613 +
1691480591.0198956-CDS-H-paniculata_contig10092:5514..56131691480591.0198956-CDS-H-paniculata_contig10092:5514..5613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 5515..5613 +
1622928715.8601732-CDS-H-paniculata_contig10092:6196..62651622928715.8601732-CDS-H-paniculata_contig10092:6196..6265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 6197..6265 +
1691480591.0311584-CDS-H-paniculata_contig10092:6196..62651691480591.0311584-CDS-H-paniculata_contig10092:6196..6265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 6197..6265 +
1622928715.8717978-CDS-H-paniculata_contig10092:7446..75621622928715.8717978-CDS-H-paniculata_contig10092:7446..7562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 7447..7562 +
1691480591.049054-CDS-H-paniculata_contig10092:7446..75621691480591.049054-CDS-H-paniculata_contig10092:7446..7562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 7447..7562 +
1622928715.8884678-CDS-H-paniculata_contig10092:8391..85361622928715.8884678-CDS-H-paniculata_contig10092:8391..8536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 8392..8536 +
1691480591.059534-CDS-H-paniculata_contig10092:8391..85361691480591.059534-CDS-H-paniculata_contig10092:8391..8536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10092 8392..8536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10092.77.1prot_H-paniculata_contig10092.77.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10092 839..8536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10092.77.1

>prot_H-paniculata_contig10092.77.1 ID=prot_H-paniculata_contig10092.77.1|Name=mRNA_H-paniculata_contig10092.77.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MMTHCQQNLMLLVALLAEAVSHSPSSATPSDSPSSSCLTKQLMIRPTAAS
SRPDCRHINNTRWTRSLSTSMCWATSSSWANFSRGASNRGSSRSYQQGKI
GQGWIKRRGELNRSSSDLNMKAMGTAHKKRRGSAAAKSKKEPQYIQIEDL
ESDSWRLVEAAEILSRGGVGVIPTDTCYTFACDILSRKGIERIMQIKSQQ
GRKKPLSLLCKDISTMSTYADGIDKALFKTMKVALPGPFTFVLPSNNQVP
RMLIDHKHHKKTWKRREIGVRMPDSPVLMELLHHLGGPLLCSSVPSAIPT
DGSDFSFHEEEHVDQLDPKDDAETAAEGTGVGGDW
back to top

mRNA from alignment at H-paniculata_contig10092:776..8536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10092.77.1 ID=mRNA_H-paniculata_contig10092.77.1|Name=mRNA_H-paniculata_contig10092.77.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7761bp|location=Sequence derived from alignment at H-paniculata_contig10092:776..8536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTAACAGTATACGGTCAGTGAATACCTTGCTCTCCCATTTGTTGGTCA
GATATCACGCAGTATGATGACTCACTGCCAACAAAACCTCATGCTCTTGG
TGGCGCTCCTTGCAGAAGCAGTGAGTCATAGCCCTAGCTCTGCTACTCCT
AGTGACAGCCCGAGTTCATCATGTTTGACCAAGCAGCTCATGATACGCCC
GACAGCAGCGTCAAGTCGCCCAGATTGCCGACACATCAACAACACACGAT
GGACCCGGTCGCTGTCTACTAGCATGTGCTGGGCGACTTCGAGCTCATGG
GCAAATTTTTCTCGCGGCGCTTCCAACCGTGGAAGCAGTAGATCGTACCA
GCAAGGCAAAATTGGGCAAGGTTGGATAAAGAGGCGGGGGGAATTGAACA
GATCGTCATCCGATCTCAACATGAAAGCGATGGGAACTGCGCACAAGAAA
CGGCGAGGCTCTGCGGCTGCGAAGTCCAAGAAGGAGCCACAGTATATCCA
GATCGAGGATCTCGAGAGCGACTCGTGGAGGTAAGACTACTCAGGACACG
CATACCCGCAGCACATCACAGTTGGCTAAAGCTAGTTTCAGCCAGTGTGA
GTAAGTTCGATTGAGTGTAAGTGGTCGTCTACTGTATGTGTGCGTAGTTA
CTTGTTCAATGTCTTGCATCATACAATTGTGACGTGCATGATATCCTTTT
TCCACACGTTTTTGCTCCGGAAGGGTCACTCAAGCGGGTAAGAACACGGG
TGGAAATGGTGATCTGGAAATTTTGGAATTTGGGGTGGGAACCTGTAAAG
AGCCGGACTTCAGCCATTTAAAAATCCTTAAGGTCTTGCTTCCTGTTGAT
TTGGCCCAATTTTTCATTTTTCCTCTCGACCTTTTCTTGAATTTTGAATT
ATGGGGGAGGTTTGCTCCATTTAACCCTAATCCCCACGCCCTGTCGTAGT
GTGCGGCTGCAGAGCTCAAATCGATTTAACAGAAAACAGGTGCTGCGCAT
TGGTCAGGATGGATCAGGATGGTGGACATCATGATAACTCTTACATGGAG
TGATTTACTTATTTTGTAGCATAGTCATCCATTATTATTTTCGACAAAGC
ACGGGGGGTGATCAGAGGTCAGATTTCGAGCCCCCGTCCCTTCCCCCCTC
AAACCTTTTGTTGGCCAAATGAACAATTTATATAAATATTGACAACCTTA
GAGTAAATTCTAAATCTGAAATAATTCTTGAGAAATTCCGACTCCTAATA
AAGTTCATGTTCTGTTTTCAGATTTCTGGCCGCGCATGCTTTGCAGCTCA
GTCTGAACCCCCCCAAAATGTGGCGAAATCGAAGGCTTTATTGTAGTGTA
GGAGATGAGAGATTTATTATATAGGTAACTATTCAGGGAGCAGCCGGATA
TCGCAGCAGCAGCAGCCAAGTGCTAAGTAATTGGTGAAACACACTGCACA
CGGGCTGAAGTCTACGTGACATGGTAGCCGACGAGCGATATGGAAATGTC
TCAGACTAATCTTGCGAATGATTTTTGCCGTGCTCGATGGTGCCAGAGCC
TTGCTAAAGGCCAGTTTGGGAGTGTCAGCTCACCTGAGCAACCTGTGTCA
GTTGGTGTTACTTCAAGCCAAATGCTGGCCCTGAAGGCAGCACAGCTCAC
TGCAAGACGCACACCACTCGGTAGATAAACACAGGAAGAAGATATCTACA
CACCAATATTTGTGGATTCATTCAACTGGGGTCGAGAGATAAGGATGCAT
GTGAAGGCTCCCTTTGGTGGGGTATTTTTCATATTTTTGTCGAAATCGCC
CGAACGGTCATCCGAAAAATATCACCCCCCGGACAAGTATGAATACTTGC
AAATGATTTTCACAAAAAACGGAAAGTAATTCGCCTGAGTTTCAGAATGA
GCGGACATATGGAATGAAGTACACACCCGTGTCCATTCGATATGCGAGTA
TTATTAACAGTTGTGGATGGCCCGGGGCACATAGAATACACTAGCTCATT
CTGAAACTCAGGCAAACACGCTACACTTTCAGTTTTTTGTGAAAACCATC
TGCAAGTATTCGTATTGTCCGGGGGGTGAAACAGTTGCGAGGACCACTAC
TGCTGTGTGCGTACTGTTGTAGCAGCTTTCTTCTTCGTCAGCACCAAGCA
GCGTTCGACGCACTGCTCCTACTGATGTGCGCGTGCATAGTACTGCGTGG
CTACGTACAGCACACCATTACCCTGTTTCTCTGCAGACCGTCTAGGCGCT
ACGATCTGAAACACCACACCCAGCAATTCATTGTACAACCATGTTTGACA
TTATCTACTGTCTGTACCGCGTTTTCTCTCGCTATCTTGGGATGTAAAAT
AAGAAGGCTGGCCCTACCATCATGTTCAACATCGCTGCTGCTTCCATCGA
TATTTTGGCAGACATTTGCGGACAGTTTAGGCTATCGAGAGTTGTGGATT
CACGGCTTTGCGAGCGTCGGGGGGCACAAACGACAGTTTTGCGTGTGTTC
AAACACAGGGTAGAGGTGATTGTAGTGGTGGAAATTCATGGCAAATTCTT
TCCATGCTTGGACGATTCCGGTATACAAAATCTGCCGTTTTGTTGATGGA
TATTTGTTGTGTGTTGTTTGTCGTGTTTTGCCCAGGCTGGTGGAGGCGGC
GGAGATCTTGTCAAGGGGCGGAGTGGGTGTGATTCCGACGGACACGTGCT
ACACGTTTGCGTGCGATATTCTTAGCCGAAAGGGGATAGAGAGGGTGAGG
CCCTGCTGCCTGCGGCACTCGTTTACATGAGTATTTCTTCACCCTCTGAC
CGCGGTACAGTTGCAAATATCCAAGAACTAAGTGGTCGTCTGAAATGGCT
AAGACGGTGGTACCCCTGAAGGCCAAAATCTCGCCCTCCTACAGGTGTCA
AGCTGAAGGAGGGATTGGCTGTAACATACTACATCATGCATACACACGGT
CTAAAATGTGAACATGAGTGTAATTGTCCCCGACAGACATTGGGAGATTA
CTTCCACATCAAAGGTGTTTTCCTCAGGTGGCCACGTCGTGTTCCCCCCT
TTGTTCGACGCTTCCTTTCGAAGACGTCGATTCAGGGGTAATCGGGACCC
GACCGGCTGGTGGCGAGGTGTTACAATCGCTTTTCTTCACATGAGCTCTG
AATTCCTTGCTTTGGTTCCCCCACCGTAGTTGCGAGTTTTGTGTTGGGTG
CTTAACCTTTTTGGTGTGTCGATGTTGGGATTCGAACTCACGACCTCAAG
AACCAGAAGCATACCAGCTACCTATCGGTGTTGCGAATGTGAAAAAAAGG
GTAACAGTCTTCGACAGACGTTGACTAATCATCACCCACTTTAACGTGTT
TTTCTCAGGTGCCAGTGTGAACTATAAATGGAACCGAAGAGGCGAGGAAC
CTCGATTTCAACTAGGGTTAAGGGGGTCATAATTAGTCGTTTCAGGCGAC
CCATTAATCCTTGGATGTGTGCACAGTTGGGGTCTTTCCCGAAGGCGCAA
TCTTGACTTGATCCAAACGGAAGTACTGCCTGTGCTTCTTCGTGATAATG
GACACAGATAAGTCACGACGCCTTTGTGGCCAAAACGTTTGAACGCCACG
TTGAGCACCAAGCGGGTTGAGATAGGATAAGGTGGGCCTACGTTGTAGAG
AGTAGCTTTAGTGTCACTTTTGGCTTCGGTCCGCTTTACAGCGAAACCAG
ACAACACGATAATAAATGTTAGCTATGTCCAGAACTGGCCCAAAGTGCTT
CAATAAATAGTAGCTATGTTTAGACTTCAATTCGGCTTTGACAGCAGAAA
TGCCCCCTCCCTACTGAATTACAGTGCAAACGATTTTTCGTCTGTAGTAT
GTAAACGCTCAACCGCTTCAGTAACAAGTTTTTGCTCCCGTGCGATATGT
AGGTAATCGGTTCTTGAATTCCGCCGGCTTCAAGTACTCCAAACATACCG
ATGCCGAAAATATACTAGGTCAGGCGTTTGGCATGGTTCTGCAACGAACC
AGATTGCTGAACCCCATCTCAGCCGAAAGGGAATTCGTTACTTGGGGTAT
ATCGTTGGTATGATTGTGCACCCGTCCAATCAGGTTTCTGTAGATCGTCC
TAGCCGAGTAAAAGTTCGGAAGGTTTGGGGTTTGGGGTAGTCGGTCGGGG
GAAAACATCAATCTTCCCGTATTTAATAGGATAAGAGGTATGGCGAGTAG
CAAATTGAAGTGTATGTACAGTCATGATCCAACCCGCCTCGACAGGGAAA
GTCATATTATTGTTCCAAAGATTGTTCGGCAATGTGCGCGTGTATGTTGC
ATTTCAAAATATGAAGGTGACGAGTATCAGTCATCCCCTAAATTACAGAG
GTATGTGGCCGAGGACAAACACCAATCATCTCCTCTCGACGTCGGCTATG
TTCCCGCTTTTTGGGGGCATCATGCCTCACAGTGCGATTCAGTATCATAT
ATTCCTTTGGTCAACCATAGTGGCAATGACCTACAGTCAGTTTAGTTTAT
ATATATATATATATATATATGTATGTATGTATGTATTTAGTACAACCCAC
CGTCTTTTTTTCGCACAAAACTGAACAGTGCGTGGGCATCAAACTTGTGC
TCTGTTTGCACGCTGCTGCACGAGATTCGAAAGCTGTGCCAGACGCCAAC
CATCCCCGCAACCCCCCCCCCCCCCCTACCCTTCCCTCCTCCCCTCTCCT
CGCGTTCTCATGTTTTATTCACGAAACCTTTCCCCGCAGATCATGCAGAT
CAAAAGCCAGCAGGGAAGGAAGAAGCCGTTAAGTCTCTTGTGTAAGGATA
TCTCCACGATGAGCACGTACGCCGACGGCATCGACAAGGTTGTGGCGAAC
AATATTGGGTTGCATCCCTAGTTGCTGTCGGTTTGTTTCTTTTATGAGCG
AGAGCCCAGGTTTTGGCCTCGTCTTGTTTGTGTTTTTTTTTTGTCGGGGT
GGCAACAGAGGCCAAACGTGGTTTTGGTATAATGAAGGATGTATCATGGT
ACTAAGTATATAGCAAAAACGAAGAGTCTCGCGTTTCTAGATCGTTTTTT
TTTTATATCTTGATTTTTTCCACAGAGAAGAACATTCCCTGAAGCTTATT
TCCTCAAATTTCGGGAAATTGTGCCGCTTTTTATGTGTTGCTCTCCACCG
TAGTGCGTTACCGTCGCCAGTTGTTGATGCTCGCACCCTTATTAGTATGT
CCTTCTATCGCATGATACATTCTTGTGTGTGTGTGTGTATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTTTTTCTTCGTCATTGC
TGTACGCGCTTTTTCTGTGAAATATGTATATTTATTCACGCCGCTTACAT
TGATCGTACCTGGTTACGTATATTTTTGCCATTGTTATTTTGTGCGCGGT
GTTGTACTTGTATCTGTGTAGGCGTTATTCAAGACCATGAAAGTCGCGTT
GCCGGGACCTTTTACCTTCGTCTTGCCTTCCAACAATCAAGTGAGTTTTT
CTCGTTTCGGAATCGTCCTATTACATGTACTGTAGGTACGTACGGAGATT
ATGCCAGTGCAATTCAACAGAAAGACAAAGATCCAACTAGCTGCTATCAA
GATAAGAGGGGTTTGAGTTTTGGGCATGTCGCCCAAAATAGCGCACGTGA
CTTGAAACACGCTCCACGGCTATAGAATACAGCTACGAAGGCGAAACTAG
CGCAGATGTGTTCCTCTTGACATAGCGGATGTGGTCACGTTAGGGTTTTT
GATGTATCTGCTGTGGCGGTGAAGAACTGGGGGTCGATCAACAGGGGTCA
CCTCGAATCCAAGGCGGAGGAATATATTGTTTATTTTAAAAGCGGCGAAG
TCAAGGTTTTTCCAGATTACCCATCAAGGAACAGTACACGGAGGCAAGGA
CTTACTTGTGTTTGTCCTACAGTACAGTAGGTGGCTGGCAGTTGAACTGT
CTGTACCTATGCGCCACTATTTTTACGTGGCACCGTCTGTTTGGGCACCT
CGGTGTGTCTTTGGTAATAAATTAAGGATTACGCGGACAGGAGTGCGTGC
AAACCTTTTCGAGTTGCTGACAATATTCAGCCGTCCCAAGTGCAATTGCG
GTCTTCGTTTTGCGTCTATCTCTGTTACCCCTTACCACAACCTTCCAATA
ATATCTCAACATTGCAGTGTACCGCATAACATTGGTCATACTCCACGCAG
GTCTTGTGACACGGTAACTCGCTAGAATTGCATGATTTTTAAACGGAACG
TTTTCGTACATGATCTCAGTCAATATACCGATATGGTCACGTTGAGAATT
TTTTTTTCTTCGTTCCTCATCTCGAGCTATTGGTGAAAATCCATATTTTT
GATATATATATTTTAGTATTGAATTTTAGACATCTAAATGCCATTTTCCC
CTATTTTTTTTTTTCGTTTTTTTTTTCCCCCGAATTAACTTACTTGCCCG
ATGGCCTCAGAACATAAGTTTTAGCCCTTGCGCACACAAGGCCATCGGGT
TAAATGTTCTATGCGAAAATTCGTCACTTTTCTTGTTGTAGATCTCTAGA
TGTGGCTTCGGATTAAATGGTATGTCACTTTGAAGTAAGATTAAATCGTG
TTGTTGTTGTTGTTGTTGTTGTTGCTTGAGAAATGTCCAAACAACGCGTG
TTTTTCTTCTTTCGTAAACAGGTGCCTAGGATGTTGATCGACCACAAGCA
CCACAAGAAAACCTGGAAACGGCGAGAGATCGGAGTTAGGATGCCGGACT
CGCCCGTGCTCATGGAACTCCTGCACCACTTGGGAGGGTAAAGAACATGG
CCATGCCCCAATTTTAACGGCGTGAATGTATACTTCCTCTGTATCATAGG
CAAAGTCGGTTGTGTTGGGCAGATTATATACCCAGATTTAACACTGTGCA
GAGGCTGCGATTGGAATCGTTGGTAGGCTGAAATCTGATTGACTCGTAGT
GCACTATTCCGAGCTGCATTCCGATTTTTGTATTAGAATTAGTGAGCGCT
CAAGCTTGAACTAATATTCACAATTTTCACGTTTTCCTTTGGAGAAATAC
CAAAAGGAGCAAAAAATGGCAATTTTTCGACCACCTATTTTTTGCGCCGC
GCGTGCACCCGATGGATGGGCTTTGCCAATTTCGTAAAAAATTGGGGATC
AACCCCCCCGAAACATATAGGATTATAACTGGAAAAAAAATATGAGATGG
TTGCGTACGTCCCTCTGTAAACTCAATCGGCTTCACTTTTGGCACAGAGG
AACTACATGCCATGGTACCAAACAGGGATGTCAAATGGTACACGACGAAA
CAGAACCTTTATGTTGTTCCCCCCTTGAACTGTTTTCACGTCTGTTTTAT
AAACTGTTATTCTCCAACACACTATCAGTCTGATCACTCAGAGCCCCCCC
CCCCCCCCAGGCACGTACCTACCTCTTGAGCAGGGGCTAGTTAAAGTTCG
CAGAAGAAGGGTAAAAAGAGACCGTAAACACACACACATACACACGTATA
CATACAGTACACACACCATATTCTAAACCTTGAAATTGCTGTCATACACA
CATGGAGAATGACCAATGTACACTCGGTACACCTGCTTGCCTTGCCTGCC
TGCCTCTGTGCCGCAGTCCGTTACTCTGCAGTAGCGTGCCCTCCGCCATT
CCCACCGATGGTTCGGACTTCAGTTTCCACGAAGAGGAACACGTTGACCA
ATTGGATCCCAAAGATGATGCTGAAACGGCTGCGGAGGGGACGGGAGTGG
GTGGGGACTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10092:776..8536+

>mRNA_H-paniculata_contig10092.77.1 ID=mRNA_H-paniculata_contig10092.77.1|Name=mRNA_H-paniculata_contig10092.77.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig10092:776..8536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACTCACTGCCAACAAAACCTCATGCTCTTGGTGGCGCTCCTTGC
AGAAGCAGTGAGTCATAGCCCTAGCTCTGCTACTCCTAGTGACAGCCCGA
GTTCATCATGTTTGACCAAGCAGCTCATGATACGCCCGACAGCAGCGTCA
AGTCGCCCAGATTGCCGACACATCAACAACACACGATGGACCCGGTCGCT
GTCTACTAGCATGTGCTGGGCGACTTCGAGCTCATGGGCAAATTTTTCTC
GCGGCGCTTCCAACCGTGGAAGCAGTAGATCGTACCAGCAAGGCAAAATT
GGGCAAGGTTGGATAAAGAGGCGGGGGGAATTGAACAGATCGTCATCCGA
TCTCAACATGAAAGCGATGGGAACTGCGCACAAGAAACGGCGAGGCTCTG
CGGCTGCGAAGTCCAAGAAGGAGCCACAGTATATCCAGATCGAGGATCTC
GAGAGCGACTCGTGGAGATGATGACTCACTGCCAACAAAACCTCATGCTC
TTGGTGGCGCTCCTTGCAGAAGCAGTGAGTCATAGCCCTAGCTCTGCTAC
TCCTAGTGACAGCCCGAGTTCATCATGTTTGACCAAGCAGCTCATGATAC
GCCCGACAGCAGCGTCAAGTCGCCCAGATTGCCGACACATCAACAACACA
CGATGGACCCGGTCGCTGTCTACTAGCATGTGCTGGGCGACTTCGAGCTC
ATGGGCAAATTTTTCTCGCGGCGCTTCCAACCGTGGAAGCAGTAGATCGT
ACCAGCAAGGCAAAATTGGGCAAGGTTGGATAAAGAGGCGGGGGGAATTG
AACAGATCGTCATCCGATCTCAACATGAAAGCGATGGGAACTGCGCACAA
GAAACGGCGAGGCTCTGCGGCTGCGAAGTCCAAGAAGGAGCCACAGTATA
TCCAGATCGAGGATCTCGAGAGCGACTCGTGGAGGCTGGTGGAGGCGGCG
GAGATCTTGTCAAGGGGCGGAGTGGGTGTGATTCCGACGGACACGTGCTA
CACGTTTGCGTGCGATATTCTTAGCCGAAAGGGGATAGAGAGGGCTGGTG
GAGGCGGCGGAGATCTTGTCAAGGGGCGGAGTGGGTGTGATTCCGACGGA
CACGTGCTACACGTTTGCGTGCGATATTCTTAGCCGAAAGGGGATAGAGA
GGATCATGCAGATCAAAAGCCAGCAGGGAAGGAAGAAGCCGTTAAGTCTC
TTGTGTAAGGATATCTCCACGATGAGCACGTACGCCGACGGCATCGACAA
GATCATGCAGATCAAAAGCCAGCAGGGAAGGAAGAAGCCGTTAAGTCTCT
TGTGTAAGGATATCTCCACGATGAGCACGTACGCCGACGGCATCGACAAG
GCGTTATTCAAGACCATGAAAGTCGCGTTGCCGGGACCTTTTACCTTCGT
CTTGCCTTCCAACAATCAAGCGTTATTCAAGACCATGAAAGTCGCGTTGC
CGGGACCTTTTACCTTCGTCTTGCCTTCCAACAATCAAGTGCCTAGGATG
TTGATCGACCACAAGCACCACAAGAAAACCTGGAAACGGCGAGAGATCGG
AGTTAGGATGCCGGACTCGCCCGTGCTCATGGAACTCCTGCACCACTTGG
GAGGGTGCCTAGGATGTTGATCGACCACAAGCACCACAAGAAAACCTGGA
AACGGCGAGAGATCGGAGTTAGGATGCCGGACTCGCCCGTGCTCATGGAA
CTCCTGCACCACTTGGGAGGTCCGTTACTCTGCAGTAGCGTGCCCTCCGC
CATTCCCACCGATGGTTCGGACTTCAGTTTCCACGAAGAGGAACACGTTG
ACCAATTGGATCCCAAAGATGATGCTGAAACGGCTGCGGAGGGGACGGGA
GTGGGTGGGGACTGGTCCGTTACTCTGCAGTAGCGTGCCCTCCGCCATTC
CCACCGATGGTTCGGACTTCAGTTTCCACGAAGAGGAACACGTTGACCAA
TTGGATCCCAAAGATGATGCTGAAACGGCTGCGGAGGGGACGGGAGTGGG
TGGGGACTGG
back to top