mRNA_H-paniculata_contig10090.74.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10090.74.1
Unique NamemRNA_H-paniculata_contig10090.74.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10090.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10090contigH-paniculata_contig10090:1741..3457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.5260825-CDS-H-paniculata_contig10090:1741..19771622928715.5260825-CDS-H-paniculata_contig10090:1741..1977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10090 1742..1977 -
1691480590.8358924-CDS-H-paniculata_contig10090:1741..19771691480590.8358924-CDS-H-paniculata_contig10090:1741..1977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10090 1742..1977 -
1622928715.540382-CDS-H-paniculata_contig10090:3390..34571622928715.540382-CDS-H-paniculata_contig10090:3390..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10090 3391..3457 -
1691480590.8465989-CDS-H-paniculata_contig10090:3390..34571691480590.8465989-CDS-H-paniculata_contig10090:3390..3457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10090 3391..3457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10090.74.1prot_H-paniculata_contig10090.74.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10090 1742..3457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10090.74.1

>prot_H-paniculata_contig10090.74.1 ID=prot_H-paniculata_contig10090.74.1|Name=mRNA_H-paniculata_contig10090.74.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
GLGRERSWGTVGEWKRRGWIGNAGWQRAATQAKLDDAANALLLLLLYGKT
CSFRPPTSHVVIIQRRRCRGQRRWRNCYDNAEFGRGLGRRGISKGRGQRW
E
back to top

mRNA from alignment at H-paniculata_contig10090:1741..3457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10090.74.1 ID=mRNA_H-paniculata_contig10090.74.1|Name=mRNA_H-paniculata_contig10090.74.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-paniculata_contig10090:1741..3457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTTGGCCGGGAGCGCAGCTGGGGGACGGTCGGAGAATGGAAACGGCG
GGGGTGGATTGGAAACGGTGAGAGGTTTTTTGTTTAGCTCTGTGGCTGCC
GTTCTCCCCTCTTAGCAATGTTTGTTCCCCTTGACGGCGCACTGGTTTTC
TCTGGACGCATTGATCCATAACATATATGTTTTATGTTTTGTATATTATA
TATGAATGATATCACGACTACAAATACTGCTGTGACTTGTGAAGTTTGCT
TGCAATGCGCGTTATTCGAGTATGACGTTATTTAATTGGTACTTTTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAATAGTACATAATAT
TGTGCATACCATGTGTATACAAGGTGAATAACTCTCTCTCATGTTCTATG
TGCTAGCCGTATGTTTGTGTTGAACCTTATAATGTCTGTTGTTAGGTGGG
ATTGTTGGCCTGTTCGTTTGTATCGTCTGCTTTTATGCGTAGCCGAGGCT
TGATAGTGTCGCTGATGACTGGGTCCAGAGTAGGGGTGTGTAGGGGCGGG
GGAGAAGATGGTGAACAGGTGACTGCTTCTTTAGTTCATGTTATTATTAG
AGGGGTTTTCTCTGTACTGCTTTCGTTTTGGGATGACGCCTCTTCAGCGG
TATACTGGAGCACTCACAACCATTGGGCAACACATGCATATAAGTAGTAG
AGCTACGGATGTGCTCTGCAGAGGAGTGCGTGGTTTGTCGTCGTTCGACC
TGCGCATACCGACTCGCTACGCCCTCGTGCAAACAGTTGCTGGTGCTGTT
TTTCAACGTTTGTTGTGAATTTTCAATAAAATCACTTGGGATAGAATGTG
GAAAATCAGACCCCCTCGAGACCATCATCATTATCATCATCATTATTATC
AACAACTTTTCGTATTATATAGTAGTAATGTCGTTGGTACGTGTGTATTA
CTATTTACCTCTCCGTTCATAGCTCGTGGATAATATGTCGCCGTAGTAGT
GCACAGCTTGACCCTGACTATGCTCTGTACATGGCACTACAACGCTACAC
CGTCGCCACATTTCCCCCATTCGATCTAATTTTTGCTGACAAGTGTTGAC
AATTTATATTCGAGGGTCAGCTCCATGACCTCAATATGGGGACGATGAAC
TATTTTTTATTATGTGAGCGTCATGGGAATATGAACTGAGCAAGTGGATT
GACTTATGAATGAAGCTGCTGGTGGGTGATTTTGTATTTTTTGTATCTTT
CAAGCCCCCCTCTCTCCCTCTCCCCTAGAAGAGGCAACGGTCGAGGTAGA
TAAATTGGGTGAAACAGTTTTTGAGATAAACTTGGCAACTTAGCAGGGAG
CCATGAGTTGTCGGAGATCGTTCTGATAAGAGCAAAGCTCCGTCCTCCTG
AGGTCTAACATTTACGGCATGCAAAAGAGAAGTACTCCTCCCCATGCTGC
CTCAACTCTTTGCGCTCTTGGCGGCAGCAGCAGGGTGGCAGCGGGCAGCA
ACGCAGGCCAAACTCGACGATGCCGCGAACGCCCTCCTCCTCCTCCTTCT
CTACGGCAAGACTTGCAGCTTCCGCCCACCAACATCGCATGTCGTCATCA
TCCAGAGACGGCGTTGCCGGGGGCAGCGGCGGTGGCGCAACTGCTACGAC
AATGCTGAATTCGGGCGGGGTTTGGGGCGAAGAGGGATTAGTAAGGGCCG
GGGGCAGCGGTGGGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10090:1741..3457-

>mRNA_H-paniculata_contig10090.74.1 ID=mRNA_H-paniculata_contig10090.74.1|Name=mRNA_H-paniculata_contig10090.74.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig10090:1741..3457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTTGGCCGGGAGCGCAGCTGGGGGACGGTCGGAGAATGGAAACGGCG
GGGGTGGATTGGAAACGGGACTTGGCCGGGAGCGCAGCTGGGGGACGGTC
GGAGAATGGAAACGGCGGGGGTGGATTGGAAACGCAGGGTGGCAGCGGGC
AGCAACGCAGGCCAAACTCGACGATGCCGCGAACGCCCTCCTCCTCCTCC
TTCTCTACGGCAAGACTTGCAGCTTCCGCCCACCAACATCGCATGTCGTC
ATCATCCAGAGACGGCGTTGCCGGGGGCAGCGGCGGTGGCGCAACTGCTA
CGACAATGCTGAATTCGGGCGGGGTTTGGGGCGAAGAGGGATTAGTAAGG
GCCGGGGGCAGCGGTGGGAGCAGGGTGGCAGCGGGCAGCAACGCAGGCCA
AACTCGACGATGCCGCGAACGCCCTCCTCCTCCTCCTTCTCTACGGCAAG
ACTTGCAGCTTCCGCCCACCAACATCGCATGTCGTCATCATCCAGAGACG
GCGTTGCCGGGGGCAGCGGCGGTGGCGCAACTGCTACGACAATGCTGAAT
TCGGGCGGGGTTTGGGGCGAAGAGGGATTAGTAAGGGCCGGGGGCAGCGG
TGGGAG
back to top