mRNA_H-paniculata_contig1009.73.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1009.73.1
Unique NamemRNA_H-paniculata_contig1009.73.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: D8LG57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG57_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.430e-27
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:   49 MGLPLMAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGS 270
            M LP M PSPGINYNFV G+YLVC+ +L VLLALDK+  VEAV+G+W+VF PFLPC  WA+V+RS+WL+   GS
Sbjct:   15 MALPFMTPSPGINYNFVAGSYLVCSLILVVLLALDKFLHVEAVEGSWVVFAPFLPCLAWALVIRSKWLATGGGS 88
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A7S2RHB9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.230e-16
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   64 MAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGSGSEKPKEE 294
            +AP+ GINYNFV G Y + + L  VL  LDK   V  V+G W++F PFLPC +WA+ VR++WL  R    S+K K+E
Sbjct:   61 VAPTDGINYNFVSGMYALASLLFMVLYGLDKVAKVPQVEGFWLIFAPFLPCLVWALFVRAKWLRARADEESQKKKKE 137
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: W4H014_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H014_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   61 LMAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGSGSEKPKEE 294
            +++P   INYNFV G Y +CT L  +LL + +Y   ++V+G +IVF PFLPC LW++VVR  WL++     ++  K E
Sbjct:    4 ILSPVDTINYNFVAGVYGLCTVLFVLLLVIQRY--TDSVEGFYIVFAPFLPCLLWSLVVRRNWLAKEAALLNDPKKTE 79
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A485LTT7_9STRA (Aste57867_25328 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTT7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-11
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   70 PSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGSGSEK 282
            P   INYNFV G Y  CT+L  +LLA   Y   +AV+G +IVF PF+PC LW++VVR  WL +      +K
Sbjct:    7 PVETINYNFVSGVYAACTALFLILLAGHHY--TDAVEGFYIVFAPFIPCLLWSLVVRQNWLKKEAAIAIDK 75
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A1V9ZC34_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC34_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.070e-11
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   70 PSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGSGSEKPKE 291
            P+  INYNFV G Y + T L GVL  L      EAV+G +IVF+PFLPC LW++VVR  W+ +      E  K+
Sbjct:    8 PAETINYNFVAGMYGLFTLLFGVLYVLHSI--TEAVEGFYIVFSPFLPCFLWSLVVRHNWIKKEAAIEKETKKD 79
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A024U344_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U344_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.160e-11
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   61 LMAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSE 258
            + +P   INYNFV G Y +CT +   LL + +Y   +AV+G +IVF PF+PC LW++VVR  WL++
Sbjct:    4 IFSPVDSINYNFVSGVYGLCTVIFLGLLVIQRY--TDAVEGFYIVFAPFVPCLLWSLVVRRNWLAK 67
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A6G0WX27_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX27_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.790e-11
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   61 LMAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVFTPFLPCSLWAIVVRSQWLSERDGSGSEKPKE 291
            +  P+  INYNFV G Y  C+ +  +LL   +Y   + V+G +IVF PF+PC LW++VVR  WL+++  +  E  K+
Sbjct:    4 IFEPAETINYNFVSGVYAACSLIFVILLIAHQY--TDQVEGFYIVFAPFVPCLLWSLVVRKNWLAKQAEAVKETKKD 78
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BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Match: A0A7S2QZT9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZT9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.350e-8
Identity = 33/85 (38.82%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:   61 LMAPSPGINYNFVVGAYL----VCTSLLGVLLALDKYFAV--------------EAVKGAWIVFTPFLPCSLWAIVVRSQWLSER 261
            L+ PS  INYNF+ G YL    VC  L GV   LD Y                  ++ G ++VF PF+PC LW + VRS++L  R
Sbjct:   19 LLEPSDDINYNFITGCYLTATVVCVCLFGVEKLLDMYVVAAGSSNVSESITELASSIHGIYLVFIPFIPCFLWGVPVRSEFLKRR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1009.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LG57_ECTSI4.430e-2766.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RHB9_9STRA6.230e-1649.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4H014_9STRA1.120e-1243.59Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LTT7_9STRA1.200e-1147.89Aste57867_25328 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZC34_9STRA3.070e-1147.30Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024U344_9STRA4.160e-1146.97Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0WX27_9STRA5.790e-1140.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2QZT9_9STRA3.350e-838.82Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1009contigH-paniculata_contig1009:14810..16758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D8LG57
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E69C@1,2SD06@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001860.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size787
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1009.73.1prot_H-paniculata_contig1009.73.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1009 15300..16710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.4539726-UTR-H-paniculata_contig1009:14809..152991622928715.4539726-UTR-H-paniculata_contig1009:14809..15299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 14810..15299 -
1691480590.782446-UTR-H-paniculata_contig1009:14809..152991691480590.782446-UTR-H-paniculata_contig1009:14809..15299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 14810..15299 -
1622928715.4930885-UTR-H-paniculata_contig1009:16710..167581622928715.4930885-UTR-H-paniculata_contig1009:16710..16758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 16711..16758 -
1691480590.824034-UTR-H-paniculata_contig1009:16710..167581691480590.824034-UTR-H-paniculata_contig1009:16710..16758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 16711..16758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.468532-CDS-H-paniculata_contig1009:15299..154401622928715.468532-CDS-H-paniculata_contig1009:15299..15440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 15300..15440 -
1691480590.7948403-CDS-H-paniculata_contig1009:15299..154401691480590.7948403-CDS-H-paniculata_contig1009:15299..15440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 15300..15440 -
1622928715.4823675-CDS-H-paniculata_contig1009:16602..167101622928715.4823675-CDS-H-paniculata_contig1009:16602..16710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 16603..16710 -
1691480590.8075836-CDS-H-paniculata_contig1009:16602..167101691480590.8075836-CDS-H-paniculata_contig1009:16602..16710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 16603..16710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1009.73.1

>prot_H-paniculata_contig1009.73.1 ID=prot_H-paniculata_contig1009.73.1|Name=mRNA_H-paniculata_contig1009.73.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MGLPLMAPSPGINYNFVVGAYLVCTSLLGVLLALDKYFAVEAVKGAWIVF
TPFLPCSLWAIVVRSQWLSERDGSGSEKPKEE*
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mRNA from alignment at H-paniculata_contig1009:14810..16758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1009.73.1 ID=mRNA_H-paniculata_contig1009.73.1|Name=mRNA_H-paniculata_contig1009.73.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1949bp|location=Sequence derived from alignment at H-paniculata_contig1009:14810..16758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATTCATTACGAAGAGGAACACCTTTCACATCCTCTCTTTGGACAAGAT
GGGTCTTCCATTAATGGCGCCTTCGCCTGGAATCAACTACAACTTCGTGG
TAGGAGCTTACCTTGTTTGTACCTCGTTGCTCGGCGTTCTTCTCGCTTTG
GATAAGGTACAGAAAGTAATGAACAGACAATACTGATGGACAGACAGTAC
CTTCAGTACAGAGCAGTAGCGACACGTATCCTTACCTACAGAAGTCTAAC
CCGGCGGCGTTGGGCACCTGGCCTGTACTTTGTATGACTGTAGAGAGATG
AATGCAAGATATGAAGAGATTTTCCACCAGTGTTAATGGGTTGCTACAGT
GCTATGAGAAGAAGAGTGTAAGCAAGGGCTTGCAAACTCCTCCTGATCAC
GTGTCATTCATCTAGGAGTCTGGAGGTATTAGTAAATACCGTAATATTCT
GTACTGTAACTGTTGCACTGTAAACTGCAAACGTAGCTTTCTATTCTCTA
TGGTTAATGTTGACCCTTTCAGCTTTGGACGTTGTTTCGGAACACAAGAG
GCATTCGACATTCCCGCTGTGAAAGAGGGGTAAGGGTCCTTTTCCATTGG
TACGGTTTTTATCGAAGCAGGTGACAACCCCCCCCCCCGATATTTACTCA
CATCCAACGAGTTATTGATGATATGTACTTACTTCAGGACTTCGATCTAA
TTCCCAAAAAACCGAACGAGTGCACTCGAGAAATTCGAGCCAATTCCAAA
CGTAGCCACGAGTGCTACTCACACTATTTCGATGTTTGGAAGGGCCCTTA
CCTCAGATGATATTGTCTCTTTGAAACTCACACCGCGCCTCAGAGTACAC
TACAGTATAATGCCGCGGTGCTGGTGCGGCGACGTGATAAGTCCTCGGAT
CCCGAGGAGTAATCCGAGTCGAGTGATGTGAATTAGTTCCCCAAGAAGAG
ACGAGTGCAAACATGTAATCCGATTCAAATACCCCAAAATCAGAAAGCTG
CACTCGAGTAGTCAAGGAATCCTGACCATTAAACGAGGGACCGATCTCAT
TGCCTGGCGTTTTGCAACGAATACAAAAACCGCCACTGAACTGTACAGTA
CTGTCCTGTCTTGGGCGGTATTGTCGCGCTGGGTGCGAGTTAGTCGCTTT
TACTTTTATGTGTTATGTGTCCGTCGAATACGGTAGTTATCTCCCGTAAG
AGGTTGCAAGAATACCGATGCACTTGCCTCGTGCTCATATCGTGTCAACC
GCGGGCGTATTCATTATAATATTGTCGTTTCTCTTTGCTTTCGTTTGCTC
GCCTCGATTCTGTCGCAGTACTTTGCGGTGGAGGCAGTCAAAGGCGCGTG
GATCGTCTTCACCCCGTTCCTTCCGTGCTCACTGTGGGCGATAGTAGTAC
GTTCGCAATGGTTGTCCGAGCGTGATGGTTCTGGCAGCGAGAAGCCCAAA
GAAGAATAGTAGCGTGTTCTGGACGGTTGTGTTTATTTGAATCAATAGGC
GCGCTTGTACAAAAATGAGATAGAAAAGCTGATTCCTTTTATGCGTGGCC
AAACACAAGTCTTCGTGTGTTGTCGTTAGGTCTATTGAGGGATCATGGTC
CATCGATGGATCATCTGGTCATCTGGTAGATTTAAAACGTCTGCCTCGGG
GTTGGTGGGTGCCCGTGCCTATTCTCTCTCAGAAACCACCGACTCCCTCT
TCTTTTTTCCCCATTATTATGAGTTATAAAGTGTACAGGCATTTGAACTT
CTCGTAGATATGGTATTTAGGGCTTGATAGCTAGGCTGGGCTAGGCATAT
CCATTCTACTCTGAAGATCCTCGTACAACTTAGCTGTAGTTTGTCACTGA
TTTATTCCATACGTTGTCATCGGACGTGACCTGGGGGCGACTTTTTAAAA
TTCTGGCGTGGGGTGTATGTACCGGGGGGCAAAATAATGAACTGTGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig1009:14810..16758-

>mRNA_H-paniculata_contig1009.73.1 ID=mRNA_H-paniculata_contig1009.73.1|Name=mRNA_H-paniculata_contig1009.73.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig1009:14810..16758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTTCCATTAATGGCGCCTTCGCCTGGAATCAACTACAACTTCGT
GGTAGGAGCTTACCTTGTTTGTACCTCGTTGCTCGGCGTTCTTCTCGCTT
TGGATAAGATGGGTCTTCCATTAATGGCGCCTTCGCCTGGAATCAACTAC
AACTTCGTGGTAGGAGCTTACCTTGTTTGTACCTCGTTGCTCGGCGTTCT
TCTCGCTTTGGATAAGTACTTTGCGGTGGAGGCAGTCAAAGGCGCGTGGA
TCGTCTTCACCCCGTTCCTTCCGTGCTCACTGTGGGCGATAGTAGTACGT
TCGCAATGGTTGTCCGAGCGTGATGGTTCTGGCAGCGAGAAGCCCAAAGA
AGAATAGTACTTTGCGGTGGAGGCAGTCAAAGGCGCGTGGATCGTCTTCA
CCCCGTTCCTTCCGTGCTCACTGTGGGCGATAGTAGTACGTTCGCAATGG
TTGTCCGAGCGTGATGGTTCTGGCAGCGAGAAGCCCAAAGAAGAATAG
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