|
|
Homology
BLAST of mRNA_H-paniculata_contig1009.72.1 vs. uniprot
Match: D8LG56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG56_ECTSI) HSP 1 Score: 295 bits (755), Expect = 6.680e-95 Identity = 143/209 (68.42%), Postives = 165/209 (78.95%), Query Frame = 3
Query: 612 AKRTMEVVRPPGPVVATRASSDRDSGKKSEAGQKRKRPWNVVRQEHKAYFAVLAVLFQPNACLEVTPESLAARRGILKRLKRELHIPDAVSDSVDGALKSDSPLHWQKSLAALGTKVKAKLPFADHVPIMLGKMELSPGVDVDVKDKQNNWLPGKVSGLQGSSICIHYHGWAHSWDEWVDISHGRVAPRETYTPKEAWGRRKNSGKKVL 1238
A + M PPGP +R++ +E G KRKRPWN+VRQEHKAYFAVLAVLFQP AC E +PE L ARR ILKRLK+ELHIPD+VSD+V GALKSD PL WQ+SL AL KVKAKLP +H P+MLG +EL G DVDVKD Q NWLPGK++GLQGSS+CIHYHGWA+ WDEWVD+SHGRVAPRETYT K AWGRRK++GK+ L
Sbjct: 8 ASQGMGDENPPGPSEFGHHKMEREAS--AEVGMKRKRPWNLVRQEHKAYFAVLAVLFQPTACQEASPEMLDARRDILKRLKKELHIPDSVSDAVHGALKSDKPLQWQRSLVALQGKVKAKLP--EHAPLMLGNLELCVGADVDVKDFQKNWLPGKINGLQGSSLCIHYHGWANKWDEWVDVSHGRVAPRETYTSKAAWGRRKHNGKQRL 212
BLAST of mRNA_H-paniculata_contig1009.72.1 vs. uniprot
Match: A0A7S4DLL4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DLL4_9EUKA) HSP 1 Score: 55.5 bits (132), Expect = 4.020e-5 Identity = 27/89 (30.34%), Postives = 42/89 (47.19%), Query Frame = 3
Query: 933 KSLAALGTKVKAKLPFADHVPIMLGK---MELSPGVDVDVKDKQNNWLPGKVSGLQGSSICIHYHGWAHSWDEWVDISHGRVAPRETYT 1190
K + LG K + P + P + GK + + ++D D Q W P V + + IHY+ + WDEW+D + R+APR T
Sbjct: 64 KQIRHLGEPPKEEQPAGEDKPPVQGKEWLINFAVDDELDCLDTQKKWFPATVIAAEDDRVKIHYNDFEAQWDEWIDKTSERLAPRGAMT 152
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 293.9 |
| Seed ortholog evalue | 5.9e-77 |
| Seed eggNOG ortholog | 2880.D8LG56 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E4UF@1,2SBPI@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-11_001870.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 1477 |
| Cds size | 618 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1009.72.1 >prot_H-paniculata_contig1009.72.1 ID=prot_H-paniculata_contig1009.72.1|Name=mRNA_H-paniculata_contig1009.72.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MEVVRPPGPVVATRASSDRDSGKKSEAGQKRKRPWNVVRQEHKAYFAVLA
VLFQPNACLEVTPESLAARRGILKRLKRELHIPDAVSDSVDGALKSDSPL
HWQKSLAALGTKVKAKLPFADHVPIMLGKMELSPGVDVDVKDKQNNWLPG
KVSGLQGSSICIHYHGWAHSWDEWVDISHGRVAPRETYTPKEAWGRRKNS
GKKVL* back to topmRNA from alignment at H-paniculata_contig1009:5516..10864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1009.72.1 ID=mRNA_H-paniculata_contig1009.72.1|Name=mRNA_H-paniculata_contig1009.72.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5349bp|location=Sequence derived from alignment at H-paniculata_contig1009:5516..10864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTTTCACTCTATTATATACACCGCACAGCGGGTCTACTTTGTACTGTG
ACTGTACATCAGACACACCGCGTTTCCGGCCACACATCCACCAACACCAA
GTGTGTCAGCCCTGCTTTCTCTACACGGTTGCTTTTTACAGAGCCCAGAT
CATCCCATCGATCCATAAATCTCTGGCTCTAGAGCGTAGGACGGAACGAC
CCCAGCAGAGAGCAGCAACAATTTTCGAGCGCCAAATCGAGGCTTCACAA
CTTGACGTTTTTTCTTTTTTTGCCCATCTTTTTTTGCTTGAGCGGCTGGC
GCGGAAAAAGCGAAAGCACACCGCGTAAAGGGCGAAAACCTGCAACTTTG
CCCACAGGTTATTTTTTCGGCGGCCACCGCACGTGAAGTTGCACTTTCAT
CACCACTCTTCGCGCGGCTTGGCAGCAAATAGTAGCGACAGGTAGCTCAG
AGACAGGGAACTACTCTGTTCGTTTCTTCATCTCCACGTTCACTCTTCAG
GAGAGACTGGAGCTGGGGTGGCACTGCGGTACGATAGAGGCAGTAGGCTG
TTTTTGACGTTGACCTATCTACCGTTCTACGTCCTTTTTTTTGTTCACGG
TGGGTAAATCGGCTAAAAGAACGATGGAGGTCGTGAGGCCACCCGGGCCC
GTAGTGGCCACAAGAGCGAGCTCGGATCGGGACTCGGGTAAAAAATCAGA
GGCAGGGCAGAAGCGGAAGCGTCCCTGGAATGTGGTTCGTCAAGGTGCGT
TGGCTGCTTGCGTGTAATCAGTGCTACTAACTTCCTCTGTAGTATTCCTC
GCCCTGCTGTGTGTATGATATCATTTTTCGGTCACCCTGGCAAACTGTAC
GAGAGTCTAATATACATACCGACTGTATTATTACTTTATTTTCGACCTTC
TGATAGGTGGCATGCGGTGTATATAAACAGTAGTATGTCATCAATACACC
GACGCAATCTGGTGCGCGATATATATTTCAATTTGTATGCAGCCGAGATT
TTTGCCACTGGGATATAGCGATTCCTAAAAGGGGCTACTACTGACTGACG
GTCAGGTACTACAGTACTATTGCACTGTGTGTCTGTGTAGCGAGAACTGT
CATTACATTTTCATCATTTCTCCCAGGCGTGGTGATTGTATAGGACGCGT
CTTTTTTAGGACAATTTAGGCCTTCTTGTGACACAAACGCCTGGGTATTT
TTTTCGTAGGGGCTGCCCAGTTACTACCAATATACTTACTGTACTGTTGT
ACACCTGCGTTCATGCACATCGGTTCAAAATTTGCGGTCAGGACGAACGG
ATATTTCTTTTTTCGAGAATGAGATGCACAGTAGTACGTTTTGGGGCCGG
TGGGGATGAGAGGAAATTGCGCCAACGGTATGACCCCAACTCTTTTTTTT
TTTGCCAAATGCTTGGATTCTGGCAGCCCGACGCGGAGGATGCGTTTAAT
ATGTGCGCAGCGGACCGAGTGCAATTTTGTTGGTACTATACGTGCAGCAT
TGTGCACGATAATAGTTGGATTCAACCACTAGTACCCCAAAAGATCTCCA
TGGTACATGTTATTTTCCCAACAACAGAGGGTAAAGTAGTGCGAGCAGTC
TCAAAGAACACAAAGGAAGCAGCTAGAGGACACTCGAGCCAGTTTCTCAG
CCTTGGCAACCAGAACCTTGAAAGCTCCCATATTGTTTCATGTGTTGGCC
CATTATATGCTTTATTTTTGGTCTCTACAAGATAAGACTCTTGAGTTGAC
AAAAATGGTCACTTCGTGGCAGGACTATGTGGAAGCAGTCTTCACCTATG
ACATTATCTCTTTATTGATGAAGCGGTATCCCTACTGAAAAGTTTCTGAC
TGTACATACAAAAACACTCTATTTTCGTCGATCGTGTTGTTCAGGACATA
TATATATTTGATTTCACCTGCACTACGTAGCTGGAGGTGAGAGAGCTCCA
GGACTATGTGGAAGCAGTCTTCACCTATGACATTATCTCTTTATTGATGA
AGCGGTATCCCTACTGAAAAGTTTCTGACTGTACATACAAAAACACTCTA
TTTTCGTCGATCGTGTTGTTCAGGACATATATATATTTGATTTCACCTGC
ACTACGTAGCTGGAGGTGAGAGAGCTCGGCAATGCTAGCCGACAGCAAGT
AGTAAATAGGCACCAGTCGATACCTCTCGTGACTCATGACGAGGGGACTT
TCGGGTAGTTCGCCCCGAATTTACTGTATCTACTGCTGTGGTTGGTCGTT
ACACAAATCTCATGGTTGAAAGCTTCATTTAATTGAGTAGAGTACTACTG
TACCTACCTTGTGTAGATGTGATTGCCTTCTTAAACTTGAGATGAGACAT
ACGCAGCAGGGAAGATCCAGAATAAATTTCGCCCTTGAATGGGGGCTAAA
GTCAATGAGGCCTTCTATTATGGGGATCAGAATTCGATATTTTCCCTATC
TGGATGCAAGCTGCATGTCTTGATTATTACACAAGTATACGCCATCGCAA
CACTGATATTTCGAGTCACCGGACACGATCGAGACAAACTCGTATAAATT
TCATCCTCCAACACTCTGAGATGAGGTGTGCCAAGTTTCAGATGAAGATA
TAAAGTGTAGCGTTCATAGTGCTACCGGAAGTGCGGCCAAACATGAATCA
TTACTTTAGTGTTTGCTTATGATAACTTCTGTTTGAATTTCATCTGTTGC
AAACGGCAGGATGATATCTATACTGTAGAGATTTAGGCACAGGTATCATC
GATGGGGCTGAAAATACATGATAATATTTTTCGTGTGACGCACGAAATAT
TTTGTGGATTCCTTCTGATAGTGATTTTTGCAACGACCGCCGACATGCTG
TGGACATCATTCTGTATTGTTTGCATACTGAAGACACGACGACCACAACC
ACGACCATGTTACTGTATTGAACAACAAGGATATTTTTCGTTGACTGAGA
TATGTAATTTACTGTTGTTTCGGCACATCTCGTATCGTTGCTTTTCAGAG
CATAAAGCATATTTTGCGGTTTTGGCGGTACTATTCCAGCCTAACGCGTG
CTTAGAGGTTACCCCTGAGAGCTTAGCGGCGCGGCGAGGAATCCTGAAGC
GTCTCAAAAGGTGTGGTGCTGCCTTTTTCTGTTTTTTTTTGTCGGTTCCG
GACCCTTAATAACGAGGGGCGGTTACGTGTTGATATCCAGTCTTGAATTC
TTCATGTTTCACCTCGGTGCGTGTTTTTCGCCCCTTCGTTTTTAACAGTA
GCCTCGGAAATGCAAAGACTGGAAGGTCGAGGGGATGGGTGAGTATTCAA
GTATTGTGTATATGCGCCTGATAGCCTAAGCTTGCGTTCTACCGTTTGAG
ATCACCTCGGCGCTCTAAATATATCCTGATCTTTTTATGTAAATCTCCTG
AACTATGGCAGCAGAGAAGAAGCAAGATTTATTTTTCCGCTCCATTCGCT
CCGCTGAACTCGCTTCGTCCGTTCCGTGCACGGGTGTGAAATGTTTGTGT
TGGCCTCACACACGTTTTTTTTTCTTTCTTCCAGGGAGCTGCATATACCA
GATGCCGTCTCGGATTCCGTGGACGGGTGAGTTTATGTACTACGTGTGAT
CATTTGCAACCACGGAAAAAAACGTAGAGCTTGGTTTTCAAATGGATGGC
ATTGGTTCTGAGCATTCATTTGAAGGGTCCTTCTGGTTTATTATTTCTTA
GTAGGATGATGTAGAACTGTGGTTGTGGTTCTTCGAGATGAGATATACCA
ACTACCACGTTGTGTTTTTACGCCAGATAAGGGGAGTTTAAAGGGTCTTC
TATAGAACTAAATATATTCTCGATCCAATATCTGCTCACGATAAGCGTAA
TAATCGAATTCAAGCATGATGGATTATCACAGAAGACTGAAAAGAACGCT
TTTGCAGTGTGTTTACGTTTTACTTGGTGTGTGGCTTTTACTCTGTTATT
TTTCAATCGCGATTCGCCCCCCCCTCCCCCCACCGGTTTTTACTCATGTG
TGTGCGTGTATGTGTCTTTTTGTATCTATTGTCTGCTTAGCTGACGGAGC
ATAATCGTCTTTCTTCGTCCGTTCCTCTCTGGCCATGAATCGTGACTGTC
ATGATTGTCGCCGTCGTCATCGCCACACCGTCCCCAACGCAGGGCCCTGA
AATCGGATAGTCCTCTTCACTGGCAGAAGTCTCTCGCCGCTCTAGGCACT
AAGGTCAAGGCAAAACTCCCTTTCGCCGACCATGTTCCGATTATGCTAGG
TGAGAAAAGAGAGGTGGGGGGCGCTGCTCATATGTTGCTGATGACGGCGT
ACGTGACCGTGGGGTGTAGCGGCGGGACTACTAGATACAGGCAACAAAAT
ACGTCGACTGGTTGTTTGTGGTTGGTCGTGCGTAGACCGTGATGGCTTAC
ATTTTAATAATTGGAGTACTTGTCATGAGCGTGAACTAAACAACATGAGG
GGCATCGCGGAGGTGATCTTCGCCAACAAATGTAACGGGCTTACTGTGCG
CACCTACACGAATGATTGGGAAGTGTGTTGTGAAACTACAGTTCCATTTA
CAACATAGGTAAATATTGTAGCCTTCGAGCGAGGACCACCATTCTCCTAC
GGCGTTGTCGTTTTCTAGGAGTTGTGATGCAGTTCCCTACTCTTCCTCTC
CCTCGCCCCCCCGTCTCTCTCTAATTATCACTTGCCTCATCATGTGCGCA
GGCAAGATGGAGCTGTCTCCCGGAGTGGACGTAGATGTCAAAGATAAACA
GAACAATTGGCTGCCGGGAAAGGTCAGCGGTCTTCAAGGATCTTCGGTGA
GCCCCCATCCTTATTATCTACCTTACTCGCCGAACACGTAAGGTAACTCT
TTAATGGTTATTATTTACCTCATGATGAAAAGAATTTTATCCAACTTTTT
TGTTTTTATCTCCCTTACTTGTTTGGTCGATATACCTCATGTTTCATTGC
GTTTCGTTCTATTTTCGCCCAGATATGCATCCATTACCACGGTTGGGCGC
ACTCGTGGGATGAATGGGTAGATATATCGCACGGGAGGGTGGCGCCGAGA
GAAACTTACACGCCAAAGGAGGCGTGGGGCCGGCGCAAAAACAGCGGCAA
AAAAGTTTTGTGAGGAAATGGTTTGCGATGCTTTCGAAGCAAAATAGTCA
AGGTGAATCTACAACGCAAACGAAATGGCGTCGGTCTCACTTTGCTTTGT
CTCTTTGTTGTCCCCGTGCGTTGTTTCTTAGTTTGCGACGCTATATGCGA
CGCTATGCATACCGACGTTTATCGTCTAGAGTGTGGATTGACACACAACA
CACCCCACTTGTTCGGCCTGATTCGTTTGTTTTTTTCGATGGGGAGGAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1009:5516..10864+ >mRNA_H-paniculata_contig1009.72.1 ID=mRNA_H-paniculata_contig1009.72.1|Name=mRNA_H-paniculata_contig1009.72.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig1009:5516..10864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTCGTGAGGCCACCCGGGCCCGTAGTGGCCACAAGAGCGAGCTC
GGATCGGGACTCGGGTAAAAAATCAGAGGCAGGGCAGAAGCGGAAGCGTC
CCTGGAATGTGGTTCGTCAAGATGGAGGTCGTGAGGCCACCCGGGCCCGT
AGTGGCCACAAGAGCGAGCTCGGATCGGGACTCGGGTAAAAAATCAGAGG
CAGGGCAGAAGCGGAAGCGTCCCTGGAATGTGGTTCGTCAAGAGCATAAA
GCATATTTTGCGGTTTTGGCGGTACTATTCCAGCCTAACGCGTGCTTAGA
GGTTACCCCTGAGAGCTTAGCGGCGCGGCGAGGAATCCTGAAGCGTCTCA
AAAGAGCATAAAGCATATTTTGCGGTTTTGGCGGTACTATTCCAGCCTAA
CGCGTGCTTAGAGGTTACCCCTGAGAGCTTAGCGGCGCGGCGAGGAATCC
TGAAGCGTCTCAAAAGGGAGCTGCATATACCAGATGCCGTCTCGGATTCC
GTGGACGGGGAGCTGCATATACCAGATGCCGTCTCGGATTCCGTGGACGG
GGCCCTGAAATCGGATAGTCCTCTTCACTGGCAGAAGTCTCTCGCCGCTC
TAGGCACTAAGGTCAAGGCAAAACTCCCTTTCGCCGACCATGTTCCGATT
ATGCTAGGGCCCTGAAATCGGATAGTCCTCTTCACTGGCAGAAGTCTCTC
GCCGCTCTAGGCACTAAGGTCAAGGCAAAACTCCCTTTCGCCGACCATGT
TCCGATTATGCTAGGCAAGATGGAGCTGTCTCCCGGAGTGGACGTAGATG
TCAAAGATAAACAGAACAATTGGCTGCCGGGAAAGGTCAGCGGTCTTCAA
GGATCTTCGGCAAGATGGAGCTGTCTCCCGGAGTGGACGTAGATGTCAAA
GATAAACAGAACAATTGGCTGCCGGGAAAGGTCAGCGGTCTTCAAGGATC
TTCGATATGCATCCATTACCACGGTTGGGCGCACTCGTGGGATGAATGGG
TAGATATATCGCACGGGAGGGTGGCGCCGAGAGAAACTTACACGCCAAAG
GAGGCGTGGGGCCGGCGCAAAAACAGCGGCAAAAAAGTTTTGTGAATATG
CATCCATTACCACGGTTGGGCGCACTCGTGGGATGAATGGGTAGATATAT
CGCACGGGAGGGTGGCGCCGAGAGAAACTTACACGCCAAAGGAGGCGTGG
GGCCGGCGCAAAAACAGCGGCAAAAAAGTTTTGTGA back to top
|