mRNA_H-paniculata_contig1009.70.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1009.70.1
Unique NamemRNA_H-paniculata_contig1009.70.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.870e-47
Identity = 100/229 (43.67%), Postives = 133/229 (58.08%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQE-----------------------------LFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332
            M R +VD E A++ +E V     ++R+A   + V+  S++ R+TG  +M A  G  TVLT EEE+ +ED LLY  R  +GI R  L  + RQLC DGR++PWD   GPG++W   FFKRHP L+ RS+RIYE+NR+ +DD +RL+TFY  + E                             +  E GQK  G  RSNS ENVTVV  I+AA A + P  IYKGQR+QA
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQA 229          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.060e-45
Identity = 99/229 (43.23%), Postives = 132/229 (57.64%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332
            M R +VD E A++ +E V     ++R+A   + V+  S++ R++G V++ A  G  TVLT EEE  +ED LLY  R  +GI R  L  + RQLC DGR++PWD   GPG++W   FFKRHP L+ RS+RIYE+NR+ +DD +RL+TFY  + E                               AE GQK  G  RSNS E VTVV  I+AA A + P  IYKGQR+QA
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQA 229          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.400e-43
Identity = 97/229 (42.36%), Postives = 127/229 (55.46%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332
            M R +VDEE  ++    ++    ++R A   F V  TSI DR  G+VAM A  G  T+L+ EEE ++ED+LL+  R  L + R  L    R+LC DGR +PWDP KGPGK W A F +RHPR+A RS+RIYE+NR++ D+  R+  FY+ W  L                             FAE GQK  G  R+NS EN TVVA I+A      P  I+KGQR+QA
Sbjct:    1 MTRRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQA 228          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.470e-43
Identity = 98/237 (41.35%), Postives = 132/237 (55.70%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQE-------------------------------------LFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332
            M R +VD E A++ +E V     ++R+A   + V+  S++ R++G V+M A  G  TVLT EEE  +ED LLY  R  +GI R  L  + RQLC DGR++ WD   GPG++W   FFKRHP L+ RS+RIYE+NR+ +DD + L+TFY  + E                                     + AE GQK  G  RSNS +NVTVV  I+AA A + P  IYKGQR+QA
Sbjct:    1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSMDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDISWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETCLQTFYKDFGEFVDKENIPTCGTQMRQEYTDLERAVPGSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQA 237          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.570e-43
Identity = 93/228 (40.79%), Postives = 124/228 (54.39%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQ 1329
            M R +VDEE  ++    ++      ++A++ F V  TSI DR  G+VAM A  G  T+L+ EEE ++ED+LL   R  L + R  L    R+LC DGR +PWDP KGPGK W   F +RHPR+A RS+RIYE+NR++ D+  R+  FY+ W  L                             FAE GQK  G  RSNS EN+TVVA I+A      P   +K QR+Q
Sbjct:    1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEV-FGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALHDEVKPKANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQ 227          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.490e-42
Identity = 89/194 (45.88%), Postives = 113/194 (58.25%), Query Frame = 1
Query:  805 IRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332
            +R A   F V  TSI DR  G+VAM A  G  T+L+ EE++ ++D+LL+  R  L + R  L    RQLC DGR +PWDP K PGK W A F +RHPR+A RS+RIYE+NR++ D+   +  FY+ W  L                  FAE GQK  G  RSNS EN TVVA I+A      P  I+KGQR+QA
Sbjct:    3 VRKAAEVFGVGRTSIEDRCPGKVAMNAKVGPETILSKEEDSLLKDILLFAARNFLAVDRLHLGDAVRQLCDDGRRIPWDPEKVPGKDWLAGFLRRHPRVAERSTRIYEANRITEDEEPHMVQFYERWAALSTRSNRRPTTCTIRTRQAFAESGQKVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQA 196          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.630e-39
Identity = 92/229 (40.17%), Postives = 121/229 (52.84%), Query Frame = 1
Query:  724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGW-----------------------------QELFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQR 1323
            LL M R RV  E A +  E V     +  +A   + +S TS++ R++G  A+ A  G  TV+T  EE A+ED+LLY GR  + +T   L    RQLC DGR +PW P KGPG++W   F  RH R++LR +RIYESNRV++ +  RL  FYD W                             Q + AE+GQ      RS S EN T+V  INAA A + P  I+KGQR
Sbjct:   12 LLSMGRNRVCAEAATKACEAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQR 240          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.290e-37
Identity = 91/233 (39.06%), Postives = 123/233 (52.79%), Query Frame = 1
Query:  724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAE-----------------------------KGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQAA 1335
            LL M R+RVD E A++ V+ V   + ++R A   + +   S+ DR+  +VA+ A  G  TVL+ EEE  +ED+L+Y  R  L + R +L    R +C DGR VPWDP KGPG +W   F  RHP L+ R++ IYE+NR++ D   RL+ FY  W E   E                             +G K  G +RSNS EN TVVA I A      P  I+KGQR+Q A
Sbjct:   12 LLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNSRENTTVVATIGADGHTFHPTIIFKGQRMQPA 244          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.790e-36
Identity = 88/220 (40.00%), Postives = 119/220 (54.09%), Query Frame = 1
Query:  724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAEK----------------GQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQAA 1335
            LL M R+RVD E A++ V+ V   + ++R A   + +   S+ DR+  +VA+ A  G  TVL+ E E  +ED+L+Y  R  L + R +L    R +C DGR VPW+P KGPG +W      RHP L+ R++ I E+N ++ DD  RLE FY  W E  AE                 G K  G +RSNS EN TVV  I A      P  I+KGQR+Q A
Sbjct:   50 LLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAAKTYGLPLASLHDRVKKKVAIDAKVGPGTVLSKEGEDFVEDVLIYASRHFLLLGRRELKDAVRNICSDGRKVPWNPDKGPGDSWLEGVMTRHPGLSERATHINEANPINEDDERRLEAFYKAWAEYLAETKLPPEXVSAVSVSTAVGTKVPGARRSNSRENTTVVPTIGAGGHTFHPTIIFKGQRMQPA 269          
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.090e-35
Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAE 1203
            M R +VDEE  ++    ++    ++R A   F V  TSI DR  G+VAM A  G  T+L+ EEE ++ED+LL+  R  L + R  L    R+LC DGR +PWDP KGPGK W A F +RHPR+A RS+RIYE+NR++ D+  R+  FY+ W  L  E
Sbjct:    1 MTRRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDE 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E2_9PHAE1.870e-4743.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI4.060e-4543.23Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JFM5_9PHAE1.400e-4342.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK80_9PHAE3.470e-4341.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ62_9PHAE7.570e-4340.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ5_9PHAE2.490e-4245.88DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYX7_9PHAE1.630e-3940.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1T0_9PHAE3.290e-3739.06Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK8_9PHAE3.790e-3640.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRY4_9PHAE2.090e-3545.86HTH psq-type domain-containing protein n=4 Tax=Ect... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1009contigH-paniculata_contig1009:154..1491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.3
Seed ortholog evalue7.2e-11
Seed eggNOG ortholog7668.SPU_007890-tr
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CXPE@1,2RYUX@2759,39MS3@33154,3CPBT@33208,3E5GP@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size1338
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.1198835-UTR-H-paniculata_contig1009:153..8851622928715.1198835-UTR-H-paniculata_contig1009:153..885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 154..885 +
1691480590.613619-UTR-H-paniculata_contig1009:153..8851691480590.613619-UTR-H-paniculata_contig1009:153..885Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1009 154..885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.134147-CDS-H-paniculata_contig1009:885..14911622928715.134147-CDS-H-paniculata_contig1009:885..1491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 886..1491 +
1691480590.643913-CDS-H-paniculata_contig1009:885..14911691480590.643913-CDS-H-paniculata_contig1009:885..1491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1009 886..1491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1009.70.1prot_H-paniculata_contig1009.70.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1009 886..1491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1009.70.1

>prot_H-paniculata_contig1009.70.1 ID=prot_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMA
AGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNV
PWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDG
WQELFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA
A*
back to top

mRNA from alignment at H-paniculata_contig1009:154..1491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1009.70.1 ID=mRNA_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig1009:154..1491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAACTTATGAGACAGAGGAAGTATATAAACTCAGTATATTTATTACCCT TCTGCTCTGTTCCACGAGTCTATCCTAGCAAACATTGCAGATATGATACA CCAACTACCGATTGTCATGGCATATTTTTCCGGCGACCAGTCCTTGGTCG GTGGGATGATCCAATATTCCAAGCCACCTTGCCACCCGAATACCAGATCC GACGAAGCAGGGGGCGCTAAGGAGCAAATTGTGTACGAGATCATCACGTA CCGCTGCATCCTCTAATCCCATGACCCAAGGGCATTTCGCCAGCAAAACA TGAATATGACGATTGGCAGTTGGTCAATCACGTGTCTGGAATGCTTCTCG GCATAAACTCGTGGAACAGGGCAGAACGAGACATTTACCATGCTTTCTTG AATGAGTACCAAACTATAAGGCAGCAGAAAACCACCATAAAATAGGTACC ATTTGTATAAAGCCACGGTTTTCTTCTGTTAATACTAGATGGTATCACAA TTACAAATTTCAGGTGTAACAAATATAGAGGTAAAGTCGGGTATTAAGGT ACAGCATACCTTATCCCCGATATCTTCACGCCAAAACATTTTTCCGAAAC CCGGTTCGATAGTTTGAAATCCGACAATCCTGGGGTGTCGTTTAAGCGCT CTAACCCATGAATTGGTTACAATCTGTTTGAGATCGAGCACATCGAGAAT CTTAGAAGCGGGTAATTAGTCACCTTTTACCCATGCCGCGCGAGCGTGTA GACGAGGAAACGGCGAAACGGACCGTTGAGGTGGTCGAAAGGAAAAAACA GACCATCAGGAGTGCCGATCTCAAATTTCAAGTCAGTCCGACTTCAATAG CGGACAGGATGACCGGCAGAGTGGCGATGGCCGCCGGACCTGGTTGGCCC ACGGTCCTGACCACGGAGGAAGAGACCGCCATCGAAGACCTGCTGCTTTA CGTTGGTAGGCAGTGCCTGGGCATCACTAGGCCCCAGCTTGTTGGAAACG CTCGCCAGCTGTGCAAAGACGGCCGTAACGTGCCTTGGGACCCCCTTAAG GGGCCTGGTAAGGCGTGGTTCGCGGCATTCTTCAAGCGACACCCAAGGCT AGCACTACGCAGCTCCCGCATCTACGAATCGAACCGCGTGTCTACGGACG ATCGCTCCCGCTTGGAGACATTCTACGACGGATGGCAGGAGCTCTTCGCT GAGAAGGGCCAGAAAACGACTGGCGTGAAGCGCTCGAACTCCTCGGAGAA TGTGACGGTTGTGGCAAAGATCAACGCGGCCAGCGCCAAGATGCCGCCAT TGTTCATCTACAAGGGACAGCGGGTGCAGGCGGCCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1009:154..1491+

>mRNA_H-paniculata_contig1009.70.1 ID=mRNA_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig1009:154..1491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCGCGAGCGTGTAGACGAGGAAACGGCGAAACGGACCGTTGAGGT
GGTCGAAAGGAAAAAACAGACCATCAGGAGTGCCGATCTCAAATTTCAAG
TCAGTCCGACTTCAATAGCGGACAGGATGACCGGCAGAGTGGCGATGGCC
GCCGGACCTGGTTGGCCCACGGTCCTGACCACGGAGGAAGAGACCGCCAT
CGAAGACCTGCTGCTTTACGTTGGTAGGCAGTGCCTGGGCATCACTAGGC
CCCAGCTTGTTGGAAACGCTCGCCAGCTGTGCAAAGACGGCCGTAACGTG
CCTTGGGACCCCCTTAAGGGGCCTGGTAAGGCGTGGTTCGCGGCATTCTT
CAAGCGACACCCAAGGCTAGCACTACGCAGCTCCCGCATCTACGAATCGA
ACCGCGTGTCTACGGACGATCGCTCCCGCTTGGAGACATTCTACGACGGA
TGGCAGGAGCTCTTCGCTGAGAAGGGCCAGAAAACGACTGGCGTGAAGCG
CTCGAACTCCTCGGAGAATGTGACGGTTGTGGCAAAGATCAACGCGGCCA
GCGCCAAGATGCCGCCATTGTTCATCTACAAGGGACAGCGGGTGCAGGCG
GCCTGAATGCCGCGCGAGCGTGTAGACGAGGAAACGGCGAAACGGACCGT
TGAGGTGGTCGAAAGGAAAAAACAGACCATCAGGAGTGCCGATCTCAAAT
TTCAAGTCAGTCCGACTTCAATAGCGGACAGGATGACCGGCAGAGTGGCG
ATGGCCGCCGGACCTGGTTGGCCCACGGTCCTGACCACGGAGGAAGAGAC
CGCCATCGAAGACCTGCTGCTTTACGTTGGTAGGCAGTGCCTGGGCATCA
CTAGGCCCCAGCTTGTTGGAAACGCTCGCCAGCTGTGCAAAGACGGCCGT
AACGTGCCTTGGGACCCCCTTAAGGGGCCTGGTAAGGCGTGGTTCGCGGC
ATTCTTCAAGCGACACCCAAGGCTAGCACTACGCAGCTCCCGCATCTACG
AATCGAACCGCGTGTCTACGGACGATCGCTCCCGCTTGGAGACATTCTAC
GACGGATGGCAGGAGCTCTTCGCTGAGAAGGGCCAGAAAACGACTGGCGT
GAAGCGCTCGAACTCCTCGGAGAATGTGACGGTTGTGGCAAAGATCAACG
CGGCCAGCGCCAAGATGCCGCCATTGTTCATCTACAAGGGACAGCGGGTG
CAGGCGGCCTGA
back to top