mRNA_H-paniculata_contig1009.70.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.870e-47 Identity = 100/229 (43.67%), Postives = 133/229 (58.08%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQE-----------------------------LFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332 M R +VD E A++ +E V ++R+A + V+ S++ R+TG +M A G TVLT EEE+ +ED LLY R +GI R L + RQLC DGR++PWD GPG++W FFKRHP L+ RS+RIYE+NR+ +DD +RL+TFY + E + E GQK G RSNS ENVTVV I+AA A + P IYKGQR+QA Sbjct: 1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQA 229
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI) HSP 1 Score: 176 bits (447), Expect = 4.060e-45 Identity = 99/229 (43.23%), Postives = 132/229 (57.64%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332 M R +VD E A++ +E V ++R+A + V+ S++ R++G V++ A G TVLT EEE +ED LLY R +GI R L + RQLC DGR++PWD GPG++W FFKRHP L+ RS+RIYE+NR+ +DD +RL+TFY + E AE GQK G RSNS E VTVV I+AA A + P IYKGQR+QA Sbjct: 1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQA 229
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.400e-43 Identity = 97/229 (42.36%), Postives = 127/229 (55.46%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332 M R +VDEE ++ ++ ++R A F V TSI DR G+VAM A G T+L+ EEE ++ED+LL+ R L + R L R+LC DGR +PWDP KGPGK W A F +RHPR+A RS+RIYE+NR++ D+ R+ FY+ W L FAE GQK G R+NS EN TVVA I+A P I+KGQR+QA Sbjct: 1 MTRRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQA 228
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.470e-43 Identity = 98/237 (41.35%), Postives = 132/237 (55.70%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQE-------------------------------------LFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332 M R +VD E A++ +E V ++R+A + V+ S++ R++G V+M A G TVLT EEE +ED LLY R +GI R L + RQLC DGR++ WD GPG++W FFKRHP L+ RS+RIYE+NR+ +DD + L+TFY + E + AE GQK G RSNS +NVTVV I+AA A + P IYKGQR+QA Sbjct: 1 MVRSKVDPEQAQKAIEAVRSGAMSLRAAAQAYGVNKRSLSRRLSGDVSMDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDISWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETCLQTFYKDFGEFVDKENIPTCGTQMRQEYTDLERAVPGSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQA 237
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE) HSP 1 Score: 163 bits (413), Expect = 7.570e-43 Identity = 93/228 (40.79%), Postives = 124/228 (54.39%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL-----------------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQ 1329 M R +VDEE ++ ++ ++A++ F V TSI DR G+VAM A G T+L+ EEE ++ED+LL R L + R L R+LC DGR +PWDP KGPGK W F +RHPR+A RS+RIYE+NR++ D+ R+ FY+ W L FAE GQK G RSNS EN+TVVA I+A P +K QR+Q Sbjct: 1 MTRRKVDEEKVRKAFAAIDNGMSVRKAAEV-FGVGRTSIEDRRRGKVAMNAKVGPETILSREEEDSLEDILLVAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALHDEVKPKANHVHNTDETGTTPQGTKTTKAFAESGQKVVGSMRSNSRENITVVATISADGHTWAPTITFKRQRLQ 227
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.490e-42 Identity = 89/194 (45.88%), Postives = 113/194 (58.25%), Query Frame = 1 Query: 805 IRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQEL------------------FAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQA 1332 +R A F V TSI DR G+VAM A G T+L+ EE++ ++D+LL+ R L + R L RQLC DGR +PWDP K PGK W A F +RHPR+A RS+RIYE+NR++ D+ + FY+ W L FAE GQK G RSNS EN TVVA I+A P I+KGQR+QA Sbjct: 3 VRKAAEVFGVGRTSIEDRCPGKVAMNAKVGPETILSKEEDSLLKDILLFAARNFLAVDRLHLGDAVRQLCDDGRRIPWDPEKVPGKDWLAGFLRRHPRVAERSTRIYEANRITEDEEPHMVQFYERWAALSTRSNRRPTTCTIRTRQAFAESGQKVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQA 196
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.630e-39 Identity = 92/229 (40.17%), Postives = 121/229 (52.84%), Query Frame = 1 Query: 724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGW-----------------------------QELFAEKGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQR 1323 LL M R RV E A + E V + +A + +S TS++ R++G A+ A G TV+T EE A+ED+LLY GR + +T L RQLC DGR +PW P KGPG++W F RH R++LR +RIYESNRV++ + RL FYD W Q + AE+GQ RS S EN T+V INAA A + P I+KGQR Sbjct: 12 LLSMGRNRVCAEAATKACEAVRSGSMSGNAAAAAYGISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQR 240
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.290e-37 Identity = 91/233 (39.06%), Postives = 123/233 (52.79%), Query Frame = 1 Query: 724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAE-----------------------------KGQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQAA 1335 LL M R+RVD E A++ V+ V + ++R A + + S+ DR+ +VA+ A G TVL+ EEE +ED+L+Y R L + R +L R +C DGR VPWDP KGPG +W F RHP L+ R++ IYE+NR++ D RL+ FY W E E +G K G +RSNS EN TVVA I A P I+KGQR+Q A Sbjct: 12 LLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAARTYGLPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTKVPGARRSNSRENTTVVATIGADGHTFHPTIIFKGQRMQPA 244
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JUK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK8_9PHAE) HSP 1 Score: 150 bits (378), Expect = 3.790e-36 Identity = 88/220 (40.00%), Postives = 119/220 (54.09%), Query Frame = 1 Query: 724 LLPMPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAEK----------------GQKTTGVKRSNSSENVTVVAKINAASAKMPPLFIYKGQRVQAA 1335 LL M R+RVD E A++ V+ V + ++R A + + S+ DR+ +VA+ A G TVL+ E E +ED+L+Y R L + R +L R +C DGR VPW+P KGPG +W RHP L+ R++ I E+N ++ DD RLE FY W E AE G K G +RSNS EN TVV I A P I+KGQR+Q A Sbjct: 50 LLSMGRKRVDPEQAQKAVDAVRSGEMSLRVAAKTYGLPLASLHDRVKKKVAIDAKVGPGTVLSKEGEDFVEDVLIYASRHFLLLGRRELKDAVRNICSDGRKVPWNPDKGPGDSWLEGVMTRHPGLSERATHINEANPINEDDERRLEAFYKAWAEYLAETKLPPEXVSAVSVSTAVGTKVPGARRSNSRENTTVVPTIGAGGHTFHPTIIFKGQRMQPA 269
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 2.090e-35 Identity = 72/157 (45.86%), Postives = 98/157 (62.42%), Query Frame = 1 Query: 733 MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAAGPGWPTVLTTEEETAIEDLLLYVGRQCLGITRPQLVGNARQLCKDGRNVPWDPLKGPGKAWFAAFFKRHPRLALRSSRIYESNRVSTDDRSRLETFYDGWQELFAE 1203 M R +VDEE ++ ++ ++R A F V TSI DR G+VAM A G T+L+ EEE ++ED+LL+ R L + R L R+LC DGR +PWDP KGPGK W A F +RHPR+A RS+RIYE+NR++ D+ R+ FY+ W L E Sbjct: 1 MTRRKVDEEQVRKACAAID-DGMSVRKAAGVFGVGRTSIEDRRRGKVAMNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDE 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1009.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1009.70.1 >prot_H-paniculata_contig1009.70.1 ID=prot_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp MPRERVDEETAKRTVEVVERKKQTIRSADLKFQVSPTSIADRMTGRVAMAback to top mRNA from alignment at H-paniculata_contig1009:154..1491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1009.70.1 ID=mRNA_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig1009:154..1491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1009:154..1491+ >mRNA_H-paniculata_contig1009.70.1 ID=mRNA_H-paniculata_contig1009.70.1|Name=mRNA_H-paniculata_contig1009.70.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig1009:154..1491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |