mRNA_H-paniculata_contig10089.69.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10089.69.1
Unique NamemRNA_H-paniculata_contig10089.69.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10089.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10089contigH-paniculata_contig10089:6188..6875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.0440784-CDS-H-paniculata_contig10089:6187..65531622928715.0440784-CDS-H-paniculata_contig10089:6187..6553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10089 6188..6553 +
1691480590.5906227-CDS-H-paniculata_contig10089:6187..65531691480590.5906227-CDS-H-paniculata_contig10089:6187..6553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10089 6188..6553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928715.059998-UTR-H-paniculata_contig10089:6553..68751622928715.059998-UTR-H-paniculata_contig10089:6553..6875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10089 6554..6875 +
1691480590.6015317-UTR-H-paniculata_contig10089:6553..68751691480590.6015317-UTR-H-paniculata_contig10089:6553..6875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10089 6554..6875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10089.69.1prot_H-paniculata_contig10089.69.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10089 6188..6553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10089.69.1

>prot_H-paniculata_contig10089.69.1 ID=prot_H-paniculata_contig10089.69.1|Name=mRNA_H-paniculata_contig10089.69.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LHLEDEARGKGHGEHTSFQTSSEKYDTEDAALDIGLSVFPEGKIRWTCCG
FSKASAQRNAKWYDNHCPISFKCWVYFFYILHHLTKFRERLMFQPAEEPT
VMFILHILSPHKTCDTCIYMI*
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mRNA from alignment at H-paniculata_contig10089:6188..6875+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10089.69.1 ID=mRNA_H-paniculata_contig10089.69.1|Name=mRNA_H-paniculata_contig10089.69.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=688bp|location=Sequence derived from alignment at H-paniculata_contig10089:6188..6875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCATTTGGAAGATGAAGCCAGGGGTAAGGGACATGGTGAACACACTTC
TTTTCAGACATCAAGTGAGAAATACGATACGGAAGACGCTGCACTGGACA
TTGGTTTGTCAGTTTTTCCCGAGGGGAAGATACGGTGGACTTGCTGCGGC
TTTTCGAAAGCGAGTGCACAGAGGAATGCAAAGTGGTACGACAACCATTG
TCCCATATCTTTCAAGTGCTGGGTGTATTTCTTTTACATTCTTCATCACC
TTACCAAATTTCGCGAAAGGTTGATGTTCCAGCCAGCAGAAGAACCGACA
GTGATGTTTATTCTGCACATCTTGAGTCCACACAAAACATGTGATACATG
CATATATATGATCTAATTCAGCACGCGATTAGTCCGTAAATATAGCGCGT
CCGTCAGACATGTATGCAGTTGATGCATGCAGTAAGCGAAGATAACGCCC
AAGCGCCGTCGTGTGCTGGCGGTGTATATTGTGTCGTAACAACTACCGCG
AGCTGTGGTGCTTATCCACGGCAACTTGACAACTTTCACATGAACGTACT
AGTAGTAAGACTGTATAAACGAAGTTCAAAAATCAAAATCAAAGTTGACT
TCTGAAAAAATGCCGTATTTGCTGTATCAAAAGACACACAGCTTTTCAGA
CAAGCGGCACAACAAATACTAAAATTACAACACCTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig10089:6188..6875+

>mRNA_H-paniculata_contig10089.69.1 ID=mRNA_H-paniculata_contig10089.69.1|Name=mRNA_H-paniculata_contig10089.69.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig10089:6188..6875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCATTTGGAAGATGAAGCCAGGGGTAAGGGACATGGTGAACACACTTC
TTTTCAGACATCAAGTGAGAAATACGATACGGAAGACGCTGCACTGGACA
TTGGTTTGTCAGTTTTTCCCGAGGGGAAGATACGGTGGACTTGCTGCGGC
TTTTCGAAAGCGAGTGCACAGAGGAATGCAAAGTGGTACGACAACCATTG
TCCCATATCTTTCAAGTGCTGGGTGTATTTCTTTTACATTCTTCATCACC
TTACCAAATTTCGCGAAAGGTTGATGTTCCAGCCAGCAGAAGAACCGACA
GTGATGTTTATTCTGCACATCTTGAGTCCACACAAAACATGTGATACATG
CATATATATGATCTAACTTCATTTGGAAGATGAAGCCAGGGGTAAGGGAC
ATGGTGAACACACTTCTTTTCAGACATCAAGTGAGAAATACGATACGGAA
GACGCTGCACTGGACATTGGTTTGTCAGTTTTTCCCGAGGGGAAGATACG
GTGGACTTGCTGCGGCTTTTCGAAAGCGAGTGCACAGAGGAATGCAAAGT
GGTACGACAACCATTGTCCCATATCTTTCAAGTGCTGGGTGTATTTCTTT
TACATTCTTCATCACCTTACCAAATTTCGCGAAAGGTTGATGTTCCAGCC
AGCAGAAGAACCGACAGTGATGTTTATTCTGCACATCTTGAGTCCACACA
AAACATGTGATACATGCATATATATGATCTAA
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