mRNA_H-paniculata_contig10088.66.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10088.66.1
Unique NamemRNA_H-paniculata_contig10088.66.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10088.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10088contigH-paniculata_contig10088:2824..4237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1415
Cds size1413
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.8956027-CDS-H-paniculata_contig10088:2823..42361622928714.8956027-CDS-H-paniculata_contig10088:2823..4236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10088 2824..4236 +
1691480590.5575168-CDS-H-paniculata_contig10088:2823..42361691480590.5575168-CDS-H-paniculata_contig10088:2823..4236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10088 2824..4236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10088.66.1prot_H-paniculata_contig10088.66.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10088 2824..4236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10088.66.1

>prot_H-paniculata_contig10088.66.1 ID=prot_H-paniculata_contig10088.66.1|Name=mRNA_H-paniculata_contig10088.66.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=471bp
SGGYRYDDRDRDRNGGRGSSGGGWNRDRGKRDLDLASLAAPKEAPVVGAP
EGGNAGAGAGAGAGGIGGAPGADGVTGAASGDGAGDMVDGDKDEAAATQD
KGSKEGEGQDGSNAGTKDGTSNVVGDQAGSVRPEGGKEHQQHASSSKDGG
ISAKEHRERDKGGTDESRYRRGDSRRGDRDNDGYYRHDHYHHERDRDRDR
DRDRDRDRDRDRDRDRDRQDPGKDKDKDDGPSFHGRYRGGGGGGGGGGDK
DGHDPNDRNRHQRHTRHNSRDNNNNTSSSYKHSSGSSRYDPHAPPHLHSH
SHSQSNNREHAHSHQQRPQGKQEEGARDYSQEILQPPRDDASKIQSSDDP
SSHHQRENRDNRYHHRDRDQRSSGRGSGSGPGGPDRGVPPHAGGDRDRGW
APETPGTEGVQDKERWQPDRDPGGSGEGGPRDRWRPSGEGSGPHEPGGGR
YGGYRGGGGRGASGGDEPWEP
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mRNA from alignment at H-paniculata_contig10088:2824..4237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10088.66.1 ID=mRNA_H-paniculata_contig10088.66.1|Name=mRNA_H-paniculata_contig10088.66.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-paniculata_contig10088:2824..4237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGGGTTATAGGTACGATGACCGCGACAGGGATCGAAATGGAGGTCG
AGGCAGTAGTGGCGGAGGGTGGAATAGGGATAGGGGTAAGCGGGACTTGG
ACCTGGCATCGCTGGCAGCGCCGAAAGAAGCACCGGTAGTAGGGGCTCCC
GAAGGAGGAAATGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGCATCGG
TGGTGCTCCTGGTGCCGATGGTGTGACTGGCGCTGCTAGTGGCGATGGTG
CTGGTGATATGGTGGACGGCGATAAGGATGAGGCGGCGGCAACGCAGGAC
AAGGGGTCCAAAGAAGGGGAGGGACAAGATGGTAGTAATGCTGGGACAAA
GGACGGAACGAGTAACGTTGTCGGTGATCAAGCCGGTAGCGTTCGGCCTG
AAGGGGGTAAGGAGCACCAGCAGCATGCGAGTAGTAGCAAGGATGGAGGG
ATTTCTGCAAAGGAGCATCGTGAACGTGACAAGGGAGGCACTGATGAAAG
TCGCTACCGCAGGGGCGACAGCAGGAGAGGGGATCGTGATAACGACGGGT
ACTACCGTCATGATCATTATCATCATGAGCGAGACCGAGACCGAGACCGA
GACCGAGATCGAGACCGAGACCGAGATCGAGACCGAGACCGAGACCGAGA
TCGGCAGGATCCTGGCAAGGATAAAGATAAAGACGATGGTCCATCTTTCC
ACGGTCGTTATCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGATAAA
GATGGCCACGACCCGAACGATCGCAATCGTCACCAGCGTCATACCCGTCA
CAACAGTCGAGACAACAATAATAACACCAGCAGCAGCTACAAGCACAGCA
GCGGTAGCAGCAGATATGACCCTCACGCGCCTCCTCATTTGCACTCTCAC
TCTCACTCTCAAAGCAATAATCGAGAGCACGCCCATAGCCACCAGCAGCG
TCCGCAGGGCAAACAGGAAGAAGGAGCTAGAGACTATAGCCAAGAGATCC
TACAGCCTCCTCGAGATGATGCCAGCAAAATCCAGAGCAGTGACGACCCC
AGCAGTCATCACCAGCGGGAAAATCGGGACAATCGGTACCATCACCGGGA
TAGAGACCAACGATCAAGCGGCAGGGGGTCAGGGTCTGGTCCGGGCGGAC
CGGACCGTGGGGTTCCACCACATGCGGGTGGCGACCGAGACCGTGGGTGG
GCACCAGAAACTCCCGGAACCGAAGGGGTGCAAGACAAAGAAAGATGGCA
ACCAGACAGGGACCCCGGGGGAAGCGGGGAGGGCGGACCTAGAGATCGAT
GGCGGCCGAGCGGCGAAGGTAGCGGTCCTCATGAGCCTGGCGGCGGGCGT
TACGGGGGTTACCGCGGCGGCGGTGGCCGAGGAGCTTCGGGCGGGGACGA
ACCGTGGGAACCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig10088:2824..4237+

>mRNA_H-paniculata_contig10088.66.1 ID=mRNA_H-paniculata_contig10088.66.1|Name=mRNA_H-paniculata_contig10088.66.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2826bp|location=Sequence derived from alignment at H-paniculata_contig10088:2824..4237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGGGTTATAGGTACGATGACCGCGACAGGGATCGAAATGGAGGTCG
AGGCAGTAGTGGCGGAGGGTGGAATAGGGATAGGGGTAAGCGGGACTTGG
ACCTGGCATCGCTGGCAGCGCCGAAAGAAGCACCGGTAGTAGGGGCTCCC
GAAGGAGGAAATGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGCATCGG
TGGTGCTCCTGGTGCCGATGGTGTGACTGGCGCTGCTAGTGGCGATGGTG
CTGGTGATATGGTGGACGGCGATAAGGATGAGGCGGCGGCAACGCAGGAC
AAGGGGTCCAAAGAAGGGGAGGGACAAGATGGTAGTAATGCTGGGACAAA
GGACGGAACGAGTAACGTTGTCGGTGATCAAGCCGGTAGCGTTCGGCCTG
AAGGGGGTAAGGAGCACCAGCAGCATGCGAGTAGTAGCAAGGATGGAGGG
ATTTCTGCAAAGGAGCATCGTGAACGTGACAAGGGAGGCACTGATGAAAG
TCGCTACCGCAGGGGCGACAGCAGGAGAGGGGATCGTGATAACGACGGGT
ACTACCGTCATGATCATTATCATCATGAGCGAGACCGAGACCGAGACCGA
GACCGAGATCGAGACCGAGACCGAGATCGAGACCGAGACCGAGACCGAGA
TCGGCAGGATCCTGGCAAGGATAAAGATAAAGACGATGGTCCATCTTTCC
ACGGTCGTTATCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGATAAA
GATGGCCACGACCCGAACGATCGCAATCGTCACCAGCGTCATACCCGTCA
CAACAGTCGAGACAACAATAATAACACCAGCAGCAGCTACAAGCACAGCA
GCGGTAGCAGCAGATATGACCCTCACGCGCCTCCTCATTTGCACTCTCAC
TCTCACTCTCAAAGCAATAATCGAGAGCACGCCCATAGCCACCAGCAGCG
TCCGCAGGGCAAACAGGAAGAAGGAGCTAGAGACTATAGCCAAGAGATCC
TACAGCCTCCTCGAGATGATGCCAGCAAAATCCAGAGCAGTGACGACCCC
AGCAGTCATCACCAGCGGGAAAATCGGGACAATCGGTACCATCACCGGGA
TAGAGACCAACGATCAAGCGGCAGGGGGTCAGGGTCTGGTCCGGGCGGAC
CGGACCGTGGGGTTCCACCACATGCGGGTGGCGACCGAGACCGTGGGTGG
GCACCAGAAACTCCCGGAACCGAAGGGGTGCAAGACAAAGAAAGATGGCA
ACCAGACAGGGACCCCGGGGGAAGCGGGGAGGGCGGACCTAGAGATCGAT
GGCGGCCGAGCGGCGAAGGTAGCGGTCCTCATGAGCCTGGCGGCGGGCGT
TACGGGGGTTACCGCGGCGGCGGTGGCCGAGGAGCTTCGGGCGGGGACGA
ACCGTGGGAACCCAGCGGGGGTTATAGGTACGATGACCGCGACAGGGATC
GAAATGGAGGTCGAGGCAGTAGTGGCGGAGGGTGGAATAGGGATAGGGGT
AAGCGGGACTTGGACCTGGCATCGCTGGCAGCGCCGAAAGAAGCACCGGT
AGTAGGGGCTCCCGAAGGAGGAAATGCTGGTGCTGGTGCTGGTGCTGGTG
CTGGTGGCATCGGTGGTGCTCCTGGTGCCGATGGTGTGACTGGCGCTGCT
AGTGGCGATGGTGCTGGTGATATGGTGGACGGCGATAAGGATGAGGCGGC
GGCAACGCAGGACAAGGGGTCCAAAGAAGGGGAGGGACAAGATGGTAGTA
ATGCTGGGACAAAGGACGGAACGAGTAACGTTGTCGGTGATCAAGCCGGT
AGCGTTCGGCCTGAAGGGGGTAAGGAGCACCAGCAGCATGCGAGTAGTAG
CAAGGATGGAGGGATTTCTGCAAAGGAGCATCGTGAACGTGACAAGGGAG
GCACTGATGAAAGTCGCTACCGCAGGGGCGACAGCAGGAGAGGGGATCGT
GATAACGACGGGTACTACCGTCATGATCATTATCATCATGAGCGAGACCG
AGACCGAGACCGAGACCGAGATCGAGACCGAGACCGAGATCGAGACCGAG
ACCGAGACCGAGATCGGCAGGATCCTGGCAAGGATAAAGATAAAGACGAT
GGTCCATCTTTCCACGGTCGTTATCGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGAGATAAAGATGGCCACGACCCGAACGATCGCAATCGTCACCAGC
GTCATACCCGTCACAACAGTCGAGACAACAATAATAACACCAGCAGCAGC
TACAAGCACAGCAGCGGTAGCAGCAGATATGACCCTCACGCGCCTCCTCA
TTTGCACTCTCACTCTCACTCTCAAAGCAATAATCGAGAGCACGCCCATA
GCCACCAGCAGCGTCCGCAGGGCAAACAGGAAGAAGGAGCTAGAGACTAT
AGCCAAGAGATCCTACAGCCTCCTCGAGATGATGCCAGCAAAATCCAGAG
CAGTGACGACCCCAGCAGTCATCACCAGCGGGAAAATCGGGACAATCGGT
ACCATCACCGGGATAGAGACCAACGATCAAGCGGCAGGGGGTCAGGGTCT
GGTCCGGGCGGACCGGACCGTGGGGTTCCACCACATGCGGGTGGCGACCG
AGACCGTGGGTGGGCACCAGAAACTCCCGGAACCGAAGGGGTGCAAGACA
AAGAAAGATGGCAACCAGACAGGGACCCCGGGGGAAGCGGGGAGGGCGGA
CCTAGAGATCGATGGCGGCCGAGCGGCGAAGGTAGCGGTCCTCATGAGCC
TGGCGGCGGGCGTTACGGGGGTTACCGCGGCGGCGGTGGCCGAGGAGCTT
CGGGCGGGGACGAACCGTGGGAACCC
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