mRNA_H-paniculata_contig10084.64.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10084.64.1
Unique NamemRNA_H-paniculata_contig10084.64.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10084.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10084contigH-paniculata_contig10084:1733..3737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005540.1
Exons2
Model size686
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10084.64.1prot_H-paniculata_contig10084.64.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10084 2205..3706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.5837793-UTR-H-paniculata_contig10084:1732..22041622928714.5837793-UTR-H-paniculata_contig10084:1732..2204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10084 1733..2204 -
1691480590.4174275-UTR-H-paniculata_contig10084:1732..22041691480590.4174275-UTR-H-paniculata_contig10084:1732..2204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10084 1733..2204 -
1622928714.6308734-UTR-H-paniculata_contig10084:3706..37371622928714.6308734-UTR-H-paniculata_contig10084:3706..3737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10084 3707..3737 -
1691480590.4471998-UTR-H-paniculata_contig10084:3706..37371691480590.4471998-UTR-H-paniculata_contig10084:3706..3737Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10084 3707..3737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928714.5959811-CDS-H-paniculata_contig10084:2204..23211622928714.5959811-CDS-H-paniculata_contig10084:2204..2321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10084 2205..2321 -
1691480590.426258-CDS-H-paniculata_contig10084:2204..23211691480590.426258-CDS-H-paniculata_contig10084:2204..2321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10084 2205..2321 -
1622928714.611369-CDS-H-paniculata_contig10084:3640..37061622928714.611369-CDS-H-paniculata_contig10084:3640..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10084 3641..3706 -
1691480590.437962-CDS-H-paniculata_contig10084:3640..37061691480590.437962-CDS-H-paniculata_contig10084:3640..3706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10084 3641..3706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10084.64.1

>prot_H-paniculata_contig10084.64.1 ID=prot_H-paniculata_contig10084.64.1|Name=mRNA_H-paniculata_contig10084.64.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MAFLIFKSRQTAAAWGTAAAVMAAWTYYDYLQTNENSFVDRDEWNKKIKE
REQQRKDGGR*
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mRNA from alignment at H-paniculata_contig10084:1733..3737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10084.64.1 ID=mRNA_H-paniculata_contig10084.64.1|Name=mRNA_H-paniculata_contig10084.64.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2005bp|location=Sequence derived from alignment at H-paniculata_contig10084:1733..3737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAGAGCAACGCTGCTTGTGCATGCAACAATGGCTTTCCTGATTTTCA
AGAGCAGGCAAACAGCAGCTGCTTGGGGAACGGCCGCGGCTGTCATGGTA
CGCTATTAATTCGTTTGCTCAAAACCGTGGAAAGATCGAATGAGAACAAC
AGTCAGCTTTTGTAGATTTTTTTAACATAATAATATCCGTACTTGCGGCA
GGCTGAGAGATCCACCCTGCCTCTCTAAGGCTTTTTCTGAACGTCTTGAC
AATTAGAGCGCCTTTTAACGAGGTTATTGCGGAACAGAAGAGAAATATGA
CAACAACGCGTGTCAATGATGCCGTGGCTGTATGCAGAACCATAAATCTC
TGCTTCATGTGTTGTCTGAAGTCGACTCCCTGGCTTTTAGCCGCGGCTCA
CGTCATCCACAAAGGATTTTTTTGTCCTGTTTCTTTCATTCGGTAGGTGA
ACACCAGTGTGCAACATAAAAACGTCAAGGAACATGAAAATGAACATGCA
ATTGGGGCTGTGATTGGTCTACAGCTGCGAAAAGCAGCACTACCTTTTTT
TGTTCCAAGAAGCTTTACGGAAACGAAGGAAATGTTGAAGAAAGTAACGT
GCAAATATGGGTTTATTTGTCTATTTATTACCGAGAGAACCCAGGCTGTG
TGACCAGCTGGGCGTGTTTATGGGGCAAGTGGTACCGTCAACTGCTTTGC
GAAGGTGAAGAATCGAGGATTATGACTGATGAGAAAACAAGCACATGATA
CACGTGGAACGTAAAATGTGAGCGAACGTGAACCGTTGTTTAATAGAATA
AAACTGCTTTTGCCCATATGGAAAATAATGAATATTTCAACTATTAAAAT
AGATTGAAGGAAAATGCAAGGACTAGGGAGGAAATTGTAAAGTTTCCCGG
CTATACCCACGGGTGTTTCCGGGTGCACCGCTTTTCCCGGTGCACCTGAT
AACCGAGTCTCAACGAGTAAAACTGATGTAGCTATCTCTACTCTTTTTTG
AGTGTGTGCACATCTCCCGCGTTTTCTACTCTTTCCGGAACGAAGCAAAG
CAAGTACAAATCCTGTTTTTTTACGTGATATCTTGTGCGAGAAAAAGAGA
GGGTTTCCATATAGGCTACCACTCTAACCGCGAGCGCTTATCCTGTGTGC
GTGTGCTGTATTGGGGTGTCAACTCTGTGGTGCCGTTGAAGAGAGTCAAC
CGCTCGTTGTGTGTGCATGGTATTTTGATATATCGTTGCTGAGGTCCCGA
TAGAGAGGGTCAGTCGCCGGCATCATTGTCTTCTAGAACAACTTGATCAC
TATTTATCGTGCAACTTCTCACGGCGGGTTTGTATTCCGTGTGCGTTTTC
TCCTGGTTCGTCCGTAACTACATTGCTGTGTAATTTTCTCAACTCGTGTT
GTGCGCCAAATCGCAGGCAGCGTGGACGTACTACGACTACTTGCAGACCA
ACGAAAACTCATTTGTTGACCGGGATGAGTGGAACAAGAAAATCAAGGAG
CGAGAGCAACAGAGAAAGGACGGCGGGCGCTGAAATTTCTCTTGAATATA
CTCGCAAGGATGCCACCAAGTGTATACATTCAGTAGAGATGGAATCCTAG
ACAAAGTAACTTCCCTCGTATGTCCAAGTTGGTGAAGCCATAGTTAGATT
GCCCTCGGTTGCTGCGCGGGACTCAAGGCATTTCTTCATTTTTTTCCTGT
GTTTTCGACGTCAATGACATCGTCTGATGCGTAGTATCACTACACGGTAC
GGTGAGCGTACCTTGATTGTCGAATAAGGTCGACACTGGAGTGCTGTTGA
GAGAGGGTACATTGGTGGTTCTGGATGGTTCAGGGTCTGTGACTTTTCTC
AGTACTGTTTGGGCTGACTGCGACTATATTGCCTAGTTTTCCCGGTGCCC
ATACACAGGGCGGGCGCACGATGCGCCATTGTAAATAAAACAAATTACAA
ATCGAGCGGAAAGTTCTTCTAAAGTCCATCCTTTGTCAATCGAGCCTTCC
TCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig10084:1733..3737-

>mRNA_H-paniculata_contig10084.64.1 ID=mRNA_H-paniculata_contig10084.64.1|Name=mRNA_H-paniculata_contig10084.64.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig10084:1733..3737- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCCTGATTTTCAAGAGCAGGCAAACAGCAGCTGCTTGGGGAAC
GGCCGCGGCTGTCATGATGGCTTTCCTGATTTTCAAGAGCAGGCAAACAG
CAGCTGCTTGGGGAACGGCCGCGGCTGTCATGGCAGCGTGGACGTACTAC
GACTACTTGCAGACCAACGAAAACTCATTTGTTGACCGGGATGAGTGGAA
CAAGAAAATCAAGGAGCGAGAGCAACAGAGAAAGGACGGCGGGCGCTGAG
CAGCGTGGACGTACTACGACTACTTGCAGACCAACGAAAACTCATTTGTT
GACCGGGATGAGTGGAACAAGAAAATCAAGGAGCGAGAGCAACAGAGAAA
GGACGGCGGGCGCTGA
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