mRNA_H-paniculata_contig10066.54.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10066.54.1
Unique NamemRNA_H-paniculata_contig10066.54.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10066.54.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.110e-17
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2 
Query:    2 VGVPMTTAQIEQLTLYSQRFQVRIVYFDEADTANNAAIMSKMGLGQYFGEDLLDIPAIKMKSASESRLVNPTLQTDPKANNIFTRAMR 265
            VG    TAQ EQL  YS +FQVR+V+FD A+TAN A I +K+G+ QYF + LL    I++K  S++R+VNP LQTDP  + IF R +R
Sbjct:  101 VGEDGATAQYEQLLAYSAKFQVRLVFFDNAETANLATITTKIGIQQYFSDTLLAAAGIRLKD-SDARVVNPALQTDP--SEIFFRPVR 185
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BLAST of mRNA_H-paniculata_contig10066.54.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 6.710e-11
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:    2 VGVPMTTAQIEQLTLYSQRFQVRIVYFDEADTANNAAIMSKMGLGQYFGEDLLDIPAIKMKSASESRLVNPTLQTDPKANNIFTR 256
            VG+  + AQ +QL  YS++F VRIVYFD ADT  +  + +++G+   F +  +  P +K    S   +    + TDP  NN+F R
Sbjct:  671 VGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAPRVKRTGGSADSIAPADMLTDPSQNNLFNR 755
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BLAST of mRNA_H-paniculata_contig10066.54.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.400e-5
Identity = 23/65 (35.38%), Postives = 35/65 (53.85%), Query Frame = 2 
Query:   62 QVRIVYFDEADTANNAAIMSKMGLGQYFGEDLLDIPAIKMKSASESRLVNPTLQTDPKANNIFTR 256
            QVRIVYFD ADT  +  + +++G+   F +  +  P +K    S   +    + TDP  NN+F R
Sbjct:  678 QVRIVYFDIADTILDTEVQARLGMQSNFDQPFVGAPRVKRTGGSTDSIAPADMLTDPTQNNLFNR 742
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10066.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K730_9PHAE2.110e-1752.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G056_ECTSI6.710e-1136.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G022_ECTSI2.400e-535.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10066contigH-paniculata_contig10066:1385..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D8LJM4
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size283
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10066.54.1prot_H-paniculata_contig10066.54.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10066 1398..3365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.2515469-UTR-H-paniculata_contig10066:1384..13971622928713.2515469-UTR-H-paniculata_contig10066:1384..1397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10066 1385..1397 +
1691480589.5432084-UTR-H-paniculata_contig10066:1384..13971691480589.5432084-UTR-H-paniculata_contig10066:1384..1397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10066 1385..1397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928713.2633574-CDS-H-paniculata_contig10066:1397..14481622928713.2633574-CDS-H-paniculata_contig10066:1397..1448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 1398..1448 +
1691480589.5625868-CDS-H-paniculata_contig10066:1397..14481691480589.5625868-CDS-H-paniculata_contig10066:1397..1448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 1398..1448 +
1622928713.2760878-CDS-H-paniculata_contig10066:1981..21021622928713.2760878-CDS-H-paniculata_contig10066:1981..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 1982..2102 +
1691480589.5732212-CDS-H-paniculata_contig10066:1981..21021691480589.5732212-CDS-H-paniculata_contig10066:1981..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 1982..2102 +
1622928713.2905529-CDS-H-paniculata_contig10066:3267..33651622928713.2905529-CDS-H-paniculata_contig10066:3267..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 3268..3365 +
1691480589.5883195-CDS-H-paniculata_contig10066:3267..33651691480589.5883195-CDS-H-paniculata_contig10066:3267..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10066 3268..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10066.54.1

>prot_H-paniculata_contig10066.54.1 ID=prot_H-paniculata_contig10066.54.1|Name=mRNA_H-paniculata_contig10066.54.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MTTAQIEQLTLYSQRFQVRIVYFDEADTANNAAIMSKMGLGQYFGEDLLD
IPAIKMKSASESRLVNPTLQTDPKANNIFTRAMRQILESD
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mRNA from alignment at H-paniculata_contig10066:1385..3365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10066.54.1 ID=mRNA_H-paniculata_contig10066.54.1|Name=mRNA_H-paniculata_contig10066.54.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1981bp|location=Sequence derived from alignment at H-paniculata_contig10066:1385..3365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGGGCGTGCCCATGACGACGGCGCAGATCGAGCAGCTCACGCTGTACT
CTCAGAGATTCCAGGTGCGTGATAAGGTGATACCCTCCTCGCCTCGTGAG
TTTTTTGTGGCGCGCATTGGCACAGTGTATGCCAAATTCACCCAGTACGT
CGGCCCCACCGTCAGCTCTTCATATCTTCCGATACATGCACTTGAGTATC
CAACGAAAATTCGCGGCAAAAGTTAGACATCTGGCTCGTGGAGCATCGTA
AGCTAACTCCGTGGTATTAATTCCTGTTCCACCCGGTCATCCAGAAAATG
GATCAAAACCATCCGTTTGCATTGAAACTTTGTTCCCGTATGTACCATCT
GTGCCAGGGTAAACGAGTCAGTTTCACTCTGTGTGGCGCACTATATAGCC
CCCCCCCGGTGACTTCGACCAGGTTCTTATGACTTACGATCATTGCGAAA
CCATTGCCCGGAGAGGAGCACTGAATCGTTTGTTTTCCCATATAAATAAT
GGGTGATGACAATACATGCCAACACTGAATAGACCATTTCGTATTGACGC
AGAGGTATCAATCAGCTGTTTGCTGGCCTTTTGCAATACTTGCCTAGGTC
CGCATAGTCTACTTCGATGAGGCGGATACTGCCAATAATGCAGCGATCAT
GTCCAAGATGGGACTCGGACAGTACTTCGGCGAAGATCTTCTGGACATCC
CGGCGATCAAGATGAAGAGTACGTTTCGTTGGTGGATTCCGAGTTTGGTT
TTGATCTTCCCGAGAGGTCTCATCTGTTTTTTGCCATGTAGACTATGTAT
GTGGCCCTCAGGCATGTAAAAACTAAGCTGCAACGCTAGAATAGACGAGA
ACTTTGGCTCATAAATTTACTCTCACATTTGACAATTTTCCGCCAAAAAG
ACACCCGCTAGGAATGACGTTAAGGGCAATTGTTGTGGGAATTAGAACTA
GAATGTTTCCCAGTCAGAATTTTGCAAAACGATGGTACGGGACTCGAAAG
TTCACACCACGGCAAGACGGATCTCTCGACTCATCGGACACCGGTCGAGA
CGAACTCTTGTGCCAAGTTTCAGATCACGATACGAAGCCTGACGTTCGCA
GTGCTAAACGTTGGTGGTTTCCCCTTTTTCCCTCTCCTTTAATCTCACCT
GATATTCTCCTTCTCCTGATAACACGATTATATTGTGTCGGAAAAAACGG
GAAAAAAATGAAATAGGATTATAAGGAACAATATAGTAGGCAAAAAAAAA
AATCGCTTCTGAACTTTAGAAAAAAAAATCGAGGAGAGAAAGGAAAAAAC
CGAGAAAAGAGCAAAAAAACAGAGGGGCGCGGAGGGGCGGTGGTTTAGAA
CGACCTTTAGTCAAAGAAGATATAGGCGTGGGACATGAAATCCATGGTTC
AAACAAGAACCCATCTTCGAGCATCGAGTCAGAACGAGCGGCCAGCTCGC
AGCTTTTCCCGATTTGTTTTAACTGCAAGGAAGGTCACTCAGTCAACAGT
ATAAAAGACCATCGGAGCCCTGGGCTCGTGAGAACAACGTGCCAGTTTCC
TTTTTCGAATCGCACACGAAGTCAGGCGAACTTAGGAAACCTGCCAATTA
CTTGTATCATCATGGGTGCGATGAAGAACAACTGGCAACAACATCGGTTG
ACTGCTTTTAGCGTTCTGATTCGATCATCCAATGACCGAACGTTATGGTT
TGTTCGTCCGTTCTGCTTTTGACCGAATGCTTTGAAGTACATTTTTTCCC
ATGGTCACAAAGATACAAGCATACCTTCTCGGTAAACCTCTGTACTCCCC
CTCCCCCCCTCGGCGGCGCACCTCTCCTCCCTTCCCCGCCGTACTGTTGC
GCTCATGCGCACCCATCTCTCGACACCTTCCAGGTGCGTCGGAGTCGCGA
TTAGTGAACCCCACCCTTCAAACGGACCCGAAGGCCAACAATATTTTCAC
GCGGGCGATGAGGCAGATTCTTGAATCGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig10066:1385..3365+

>mRNA_H-paniculata_contig10066.54.1 ID=mRNA_H-paniculata_contig10066.54.1|Name=mRNA_H-paniculata_contig10066.54.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig10066:1385..3365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACGGCGCAGATCGAGCAGCTCACGCTGTACTCTCAGAGATTCCA
GATGACGACGGCGCAGATCGAGCAGCTCACGCTGTACTCTCAGAGATTCC
AGGTCCGCATAGTCTACTTCGATGAGGCGGATACTGCCAATAATGCAGCG
ATCATGTCCAAGATGGGACTCGGACAGTACTTCGGCGAAGATCTTCTGGA
CATCCCGGCGATCAAGATGAAGAGTCCGCATAGTCTACTTCGATGAGGCG
GATACTGCCAATAATGCAGCGATCATGTCCAAGATGGGACTCGGACAGTA
CTTCGGCGAAGATCTTCTGGACATCCCGGCGATCAAGATGAAGAGTGCGT
CGGAGTCGCGATTAGTGAACCCCACCCTTCAAACGGACCCGAAGGCCAAC
AATATTTTCACGCGGGCGATGAGGCAGATTCTTGAATCGGATGTGCGTCG
GAGTCGCGATTAGTGAACCCCACCCTTCAAACGGACCCGAAGGCCAACAA
TATTTTCACGCGGGCGATGAGGCAGATTCTTGAATCGGAT
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