mRNA_H-paniculata_contig10058.50.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10058.50.1
Unique NamemRNA_H-paniculata_contig10058.50.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10058.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10058contigH-paniculata_contig10058:744..5039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928712.6233647-CDS-H-paniculata_contig10058:744..9221622928712.6233647-CDS-H-paniculata_contig10058:744..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10058 745..922 -
1691480589.1521187-CDS-H-paniculata_contig10058:744..9221691480589.1521187-CDS-H-paniculata_contig10058:744..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10058 745..922 -
1622928712.6358972-CDS-H-paniculata_contig10058:4995..50391622928712.6358972-CDS-H-paniculata_contig10058:4995..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10058 4996..5039 -
1691480589.1853623-CDS-H-paniculata_contig10058:4995..50391691480589.1853623-CDS-H-paniculata_contig10058:4995..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10058 4996..5039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10058.50.1prot_H-paniculata_contig10058.50.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10058 745..5039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10058.50.1

>prot_H-paniculata_contig10058.50.1 ID=prot_H-paniculata_contig10058.50.1|Name=mRNA_H-paniculata_contig10058.50.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
VVHQPNTLLCDDLIRCQLYMRVWTPNAHPHMIRYTFGYSRWRLLYYRSSS
SSSSSNNNNNNNNNLSVGYHCLAS
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mRNA from alignment at H-paniculata_contig10058:744..5039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10058.50.1 ID=mRNA_H-paniculata_contig10058.50.1|Name=mRNA_H-paniculata_contig10058.50.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4296bp|location=Sequence derived from alignment at H-paniculata_contig10058:744..5039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGTGCATCAGCCCAACACACTGCTATGCGATGATCTGATAAGGTAAGA
TGATGACCTGAACTCTACATGTTTTTGACATTGCAATTGCACTGCAATAA
GAAGAAGTGTTTATGAGTTCATGTACTACAATCTGCTGTGTTGCTCAACT
GGTACGTATGCCGTCGTGTGCTGTATCAGCCGGATGATACTACTCACTCT
CCCTGTTTCGGAATTTTCCTGCAGGTACAGAAATGTGTATATATCCCTTG
TGTGTGGTGTGCGCAGATGTTTCTTTCCCAACCCCTATTGCGAGAGCATG
GACACCGACTGTGCAATTGTTGTATTTCAGATCTATCAGCAACTCTTCAG
CCGGCCCTAAAACCTGAAGAGCTCTTACCACCCATGTACTATTTACTGCC
CGTTGTTCTGTGAAGGAAATAATGAGAGCGGTTTTCGAATTTGGCCAAAG
CAGCAAGTAGCTTTTACAGCAAAAAAACTCTGGCACGGTCGGTCCGGAGT
GGCTTTTGCAGAGTCGGTCGAGTGTGATCCGTGATCCGTGATCCGTGATC
CGTGCAACGCATGAATCCAATATTTACTCCCCTCCCACCCCCTCGACGTC
AAAAGAAGGTGAGCGCTAACCTAGCACTGAAGAGCATTGACCTCGATGTC
ACTGTTGCTTGCTCAAAAAACCAACAGTCAGTAGGTTTTGGACTGTGAGA
ACAAGGCGAGGATGCGAGATGTTCTGACTTATGCTATGTGTAGAGCTGGG
AAGATCATTCTACTTCAATGACGGGTTCACAGCTGGTTCAACCTGTCTCC
TTCCCAGCCGGGGTTGTTCGTGTACATAAATGCGCTCGGTCACCCTCCGC
TGTCACTGATGAGCGTCTCACGGAATCTTCGCTCTCCATGCCCTGTCCTC
GTTGGTGGCGTAGTGCCTGTCGTTCTGCCGTGTTGATATTTTGAAGCATT
GTCGCCATTACGGAGATTTTTGCGCTACAACAATGAAATGTAGCGTTTCT
ATGTTCGTTCCGATAACAAAACAGCAGCGCACACATGTAGATAGCATGGA
GCAGCGAACTTTAACTGTTGTCCTCTGTGGCACCTGAACCCGAAAAAAAA
AAAAAAAGTAGCCCGACAGCCCCTTGGCAAAGCTGCCACGAAACGCGGAG
GGTTCTTTTTTATGAAAGGGGGGAGGTAAATCTTCAAGCTGTAGGGTTAC
TTGTCCACAAACTGAACAAACTGCAAGAGTTGTCGTGCATACGAAAAACA
TAGGGTCAAGTCAACCATACATGTTTGTTTACCTAACAGCGAATGAAAAC
TGTCTCGTCTCTCAGATACTAGTCATGTAGTTTTGGGGTCACAGGATCCC
TATGGCGGTTCAGGGTGCTCAAGTTTTTGCGGGGGGCAACGTCCTTCTGT
TCTGGTTGTGTTTGGTGGGCGCAACAAATGCGTTGTATCGACAGCGACGG
CCGCGTATTATGTGCCTGAGTACCCCACCACCGTGGCTGTAGCCGATGCT
TTCAACAACGACACAGACAGTGTGTGCGATACATATATTTTGCTGCATTT
TTCTGCCCACACTATCTGCGGGTGTCGGAGCAGCGTTGCATGATAGCTGT
GGGGATGTTTCTGATTAATTGTCCTGGCGTGCCTCTTTGTGCGGTACACA
CACTATGTACAGTCAGCCACTCATGACGTGGCTTGTGCTTCGCGTTTCCA
TCTTGTGCTGCTATCGTGGAACTGAAAACCGTGCCAATTCCGCTCTTGTA
TGTCGGCAACACTAACTACAGGATCGTTTGTATTGCCTGTAGAGTTCCCC
GTAACCATGTCGTGGGCCTTTGTCATTGAAAACAAAAACCGAGAGAGTGT
CGGCCTGTGATATTCAAGAAACAAGCGTTGAAAACGCCGTAAAAGTTGAC
GTCTGACTCGTTCAGCGTTCAGCGTTGCAAGCTAACTTCGCGGTATTGTT
TTCAGCTGGGCATTCAATTTTTTAATGCTTGCCTCTTCGCGTGCGTTTCA
CGCGCTGTTCTGCTTTCCTGTGTTGTGCTGTCGGGCGCATAGTGGTAGCA
GTTTGTCTGTGGACTTGTTGAGTCAGCAGTTCGTGTTTTGATTATGTCTT
GGTGGGCCATTGATGGGAAGTGTCGACAAGCAGTATGGTATGTACGTTCA
GGTTTTCAGTATATTCAACGATGTATATAATAGCACAGTATAGGGCGATC
AGACATATTCACTCAGTTATCTACTAAATAGGCAGTGCAGTACTTGTACA
GCACAATGCATTGCACCGTAATATATCAAGTGCATTGCAATATCATTCAC
TTGCAAAAATATATATTTGATTAGTAGTGCGGGTCGTACATTTAAATCGA
ATGTAGGCCACAACCAATAGAAAATCTGATAATGCGAGGTCGAGGTCTGC
AAACTCTGCGCGCAGAAACCCCACCAACTCCCTGTCTTTATTATACATAA
ATCCCCCAACAAACTGCAAGTTTTCGCCTTTCTACAAAACAGGTATAACC
AGAGCACTAGGCGAAACACGGGCAAAGTGTCAAAGATTTGAACAGCTGGC
TGAAAACAACAATGTGAAATTAGCTTGCAACGCTTCGCGAGCTAGACATG
GACTTTTACGGTGTTTTCACATTTCATTGATTATAGGCGCTGTATGTAGG
TACCTTCTGTCCCGAACTAGGTGTCTGAACAGCGGGGGTACCCGATCTCC
CAAAACAGGCCACAAGAGTTGTTTTTCTCTGATTTTCATGTAGGGAGACC
GGCGCTACGCAAGGATGAACGCTACCGCGCCATGAGACATGTACCGCAGA
AACCACCCTACACACATATTGGCCCTGTTGCCCCCCGGATGCTGTCTCAT
CATTATCTAATCCCGATTTCAAGGAACAGGCAAAAACAAGATATATTACG
TTGTTTCGGGGATAGGGATTCCGCTGCTGTTCAAACAGATAGTTTACTAC
AGACAGTACTGCACGACAGGCAGCGAGATAGTTGGCAAAGGTTCCCCCGC
CATGACGGTTTCGGTTGCGTTTTATTATCAAATGCCATCTTATTTGTGTC
TGAAACTACACCCGGCGGGTAAAAGGGTTGAACAATCTAGTAGCCGATCT
TTTAAGCTCTCACCCGGAGGGCAAACATAAATATTTTCAAGCATTTGTGA
GGAAGGAAAATAAAATCTCTCTCTCTATATATATATATATATATTTACCC
AAGTTTCAAAATGCCGCAGGTACATCGAAGAAAGCGTTTGACCGCCCTGC
TCACTCATTTTACTCTCTCTCGAAGCAGTCGGATTATTGTAGATGGGCCA
GGGCTCGGGGCACATCGGATATAACGTGCTCTTGCCAAACCTCTAGGCGA
ATACATATTCAATACTGTTTTTTCATAGTTTTTGTGGCAAATGCTCCAGG
TATGCGTAGTTGTGCGGAGGGTGGAACCTTGTCTCTGTAAGATGAGAGCT
AGAGGAAAGTACCTCTGTTTCGTTTTACCAGGGGTTCAGGTAAGAAAAGG
TTCGTAGATAGCCAATGTCCCATCAATTTTTTGTGGGAATAATCTACAAT
AGAAGTAGCCATTGTCCCGCAAGTGTTTCAGTCGCCGTCGCTTGCGCTTC
ACCCGTTTTCCCGTATCGTTTATTTCTTGCGACGCGGCCATGCGTGGGTT
GCGGATATTCATCGCCTTCAAACACAGCAGCTCCCCGCTGAGGCAACATG
TACTGGTACGTTGCGTGCCTACATGTTGGAGGGATGGATATCAGGCAACG
AAATTCGGTCTGATTCCCAAATCAATGGCAGTAAATACCACACCTGATAT
ATCGATATCATTGTCAATATTGTTGATATGAGATGCGGGTATTTTGCCAT
CCTCTAGGTCCTTATATTGTCTGTGAACTGCCTTACATTATACCAATATG
TACACGTTCTTGTGCACGTGTACTTTAGTCGCACTTGCGGATGCGGACCC
ATGAGATCTTGCATTTTTCAATTTTTGATTCAAATAAAAGCAATGTAAAA
TGTGCAAGTTGGGGAAATATGCTCTCCCATATTTGACTGGATCGTTGTTG
TGTGCCCACCTTCGCAAAGACCTATAATACGATAGTGGTATGCGTCACTG
ATATCTTACTGTTTCAGGTGCCAGCTGTACATGCGGGTTTGGACGCCGAA
TGCCCACCCGCACATGATACGGTATACCTTTGGGTATTCACGGTGGCGCT
TGCTTTACTACCGCAGTAGTAGCAGCAGCAGCAGCAGCAACAACAACAAC
AACAACAACAATAACCTGTCGGTGGGATACCATTGCTTAGCGTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig10058:744..5039-

>mRNA_H-paniculata_contig10058.50.1 ID=mRNA_H-paniculata_contig10058.50.1|Name=mRNA_H-paniculata_contig10058.50.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig10058:744..5039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGTGCATCAGCCCAACACACTGCTATGCGATGATCTGATAAGGTAGTG
CATCAGCCCAACACACTGCTATGCGATGATCTGATAAGGTGCCAGCTGTA
CATGCGGGTTTGGACGCCGAATGCCCACCCGCACATGATACGGTATACCT
TTGGGTATTCACGGTGGCGCTTGCTTTACTACCGCAGTAGTAGCAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAATAACCTGTCGGTGGGATA
CCATTGCTTAGCGTCCGTGCCAGCTGTACATGCGGGTTTGGACGCCGAAT
GCCCACCCGCACATGATACGGTATACCTTTGGGTATTCACGGTGGCGCTT
GCTTTACTACCGCAGTAGTAGCAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAATAACCTGTCGGTGGGATACCATTGCTTAGCGTCC
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